Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold158G37441 Striga asiatica HOM05D003473 ORTHO05D003872 1.7e-96 355.9 171 100.0
SGA_v2.0_scaffold158G37446 Striga asiatica HOM05D003473 ORTHO05D003872 3.7e-51 205.3 134 76.9
SGA_v2.0_scaffold2G01010 Striga asiatica HOM05D003473 ORTHO05D003872 2.3e-32 142.9 134 56.0
SGA_v2.0_scaffold18G08388 Striga asiatica HOM05D003473 ORTHO05D003872 5.6e-31 138.3 134 55.2
MSTRG.314 Avicennia marina HOM05D003473 ORTHO05D003872 1.4e-26 123.6 132 45.5
MSTRG.8227 Avicennia marina HOM05D003473 ORTHO05D003872 2.4e-26 122.9 134 46.3
SalBow6G1341 Salvia bowleyana HOM05D003473 ORTHO05D003872 1.0e-24 117.5 134 45.5
BcaB04g19636 Brassica carinata HOM05D003473 ORTHO05D003872 1.8e-24 116.7 134 44.8
ECA238G4809 Erigeron canadensis HOM05D003473 ORTHO05D003872 1.8e-24 116.7 134 45.5
C09p05430 Brassica napus HOM05D003473 ORTHO05D003872 2.3e-24 116.3 134 44.8
BraA09t36141Z Brassica rapa HOM05D003473 ORTHO05D003872 2.3e-24 116.3 134 44.8
Oeu014528.1 Olea europaea HOM05D003473 ORTHO05D003872 2.3e-24 116.3 134 43.3
Oeu014529.1 Olea europaea HOM05D003473 ORTHO05D003872 2.3e-24 116.3 134 43.3
Thecc.05G270100 Theobroma cacao HOM05D003473 ORTHO05D003872 2.3e-24 116.3 134 45.5
BcaC04g23717 Brassica carinata HOM05D003473 ORTHO05D003872 3.0e-24 115.9 134 44.0
BcaC06g30691 Brassica carinata HOM05D003473 ORTHO05D003872 3.0e-24 115.9 134 43.3
BolC9t53472H Brassica oleracea HOM05D003473 ORTHO05D003872 3.0e-24 115.9 134 44.0
Nitab4.5_0001913g0170 Nicotiana tabacum HOM05D003473 ORTHO05D003872 3.9e-24 115.5 134 44.8
Dinv15516 Davidia involucrata HOM05D003473 ORTHO05D003872 5.1e-24 115.2 134 44.0
A09p05020 Brassica napus HOM05D003473 ORTHO05D003872 6.7e-24 114.8 134 44.0
Eucgr.B02153 Eucalyptus grandis HOM05D003473 ORTHO05D003872 8.7e-24 114.4 134 44.0
Atru.chr2.998 Acer truncatum HOM05D003473 ORTHO05D003872 1.1e-23 114.0 134 43.3
Dinv25278 Davidia involucrata HOM05D003473 ORTHO05D003872 1.1e-23 114.0 134 44.0
Carub.0006s2614 Capsella rubella HOM05D003473 ORTHO05D003872 1.5e-23 113.6 134 43.3
ClCG11G010530 Citrullus lanatus HOM05D003473 ORTHO05D003872 1.5e-23 113.6 134 42.5
A06p38150 Brassica napus HOM05D003473 ORTHO05D003872 1.9e-23 113.2 134 42.5
BraA06t26728Z Brassica rapa HOM05D003473 ORTHO05D003872 1.9e-23 113.2 134 42.5
Nn1g02856 Nelumbo nucifera HOM05D003473 ORTHO05D003872 1.9e-23 113.2 155 37.4
Nitab4.5_0011129g0030 Nicotiana tabacum HOM05D003473 ORTHO05D003872 1.9e-23 113.2 134 43.3
Peaxi162Scf00718g00014 Petunia axillaris HOM05D003473 ORTHO05D003872 1.9e-23 113.2 134 44.0
CARHR185420 Cardamine hirsuta HOM05D003473 ORTHO05D003872 2.5e-23 112.8 134 42.5
CsaV3_2G009860 Cucumis sativus L. HOM05D003473 ORTHO05D003872 2.5e-23 112.8 134 41.8
Lj2C44G25 Lonicera japonica HOM05D003473 ORTHO05D003872 2.5e-23 112.8 134 41.0
RcHm_v2.0_Chr3g0449501 Rosa chinensis HOM05D003473 ORTHO05D003872 2.5e-23 112.8 134 43.3
Sed0013546 Sechium edule HOM05D003473 ORTHO05D003872 2.5e-23 112.8 134 41.8
AT5G28960 Arabidopsis thaliana HOM05D003473 ORTHO05D003872 3.3e-23 112.5 134 42.5
Sp2g19990 Schrenkiella parvula HOM05D003473 ORTHO05D003872 4.3e-23 112.1 134 41.8
COL.COLO4_15495 Corchorus olitorius HOM05D003473 ORTHO05D003872 5.6e-23 111.7 134 42.5
PGSC0003DMG400028063 Solanum tuberosum HOM05D003473 ORTHO05D003872 5.6e-23 111.7 134 43.3
THA.LOC104820771 Tarenaya hassleriana HOM05D003473 ORTHO05D003872 5.6e-23 111.7 132 43.9
AT5G28910 Arabidopsis thaliana HOM05D003473 ORTHO05D003872 7.4e-23 111.3 134 41.0
PSO017G4386 Papaver somniferum HOM05D003473 ORTHO05D003872 7.4e-23 111.3 134 41.0
BcaNung02116 Brassica carinata HOM05D003473 ORTHO05D003872 9.6e-23 110.9 134 41.0
C07p40060 Brassica napus HOM05D003473 ORTHO05D003872 9.6e-23 110.9 134 41.0
BolC7t44541H Brassica oleracea HOM05D003473 ORTHO05D003872 9.6e-23 110.9 134 41.0
CSS0019381 Camellia sinensis var. sinensis HOM05D003473 ORTHO05D003872 9.6e-23 110.9 134 41.0
MELO3C008699.2 Cucumis melo HOM05D003473 ORTHO05D003872 1.3e-22 110.5 134 41.0
Aqoxy2G03708 Aquilegia oxysepala HOM05D003473 ORTHO05D003872 1.6e-22 110.2 134 41.0
Solyc06g036640.4 Solanum lycopersicum HOM05D003473 ORTHO05D003872 1.6e-22 110.2 134 41.8
Sopen06g012690 Solanum pennellii HOM05D003473 ORTHO05D003872 1.6e-22 110.2 134 41.8
Aa31LG11G8510 Aethionema arabicum HOM05D003473 ORTHO05D003872 2.1e-22 109.8 134 42.5
CAN.G24.3 Capsicum annuum HOM05D003473 ORTHO05D003872 2.8e-22 109.4 133 42.1
Thhalv10003947m.g Eutrema salsugineum HOM05D003473 ORTHO05D003872 2.8e-22 109.4 134 40.3
Carub.0006s2613 Capsella rubella HOM05D003473 ORTHO05D003872 3.7e-22 109.0 134 39.6
Carub.0007s3766 Capsella rubella HOM05D003473 ORTHO05D003872 3.7e-22 109.0 134 39.6
TAR362G0719 Trochodendron aralioides HOM05D003473 ORTHO05D003872 3.7e-22 109.0 134 40.3
unitig_749.g14017 Utricularia gibba HOM05D003473 ORTHO05D003872 3.7e-22 109.0 76 63.2
Duzib177G0657 Durio zibethinus HOM05D003473 ORTHO05D003872 4.8e-22 108.6 134 41.8
Lsat_1_v5_gn_2_108280 Lactuca sativa HOM05D003473 ORTHO05D003872 4.8e-22 108.6 134 44.0
MBI07_g22622_MAGBIO Magnolia biondii HOM05D003473 ORTHO05D003872 4.8e-22 108.6 134 41.0
PSO063G4417 Papaver somniferum HOM05D003473 ORTHO05D003872 4.8e-22 108.6 134 41.0
Aa31LG5G14900 Aethionema arabicum HOM05D003473 ORTHO05D003872 6.2e-22 108.2 134 41.8
AL6G40940 Arabidopsis lyrata HOM05D003473 ORTHO05D003872 6.2e-22 108.2 134 39.6
Cpa.g.sc306.6 Carica papaya HOM05D003473 ORTHO05D003872 6.2e-22 108.2 134 41.0
TWI36G0550 Tripterygium wilfordii HOM05D003473 ORTHO05D003872 6.2e-22 108.2 134 41.8
CiPaw.07G073400 Carya illinoinensis HOM05D003473 ORTHO05D003872 8.1e-22 107.8 134 41.0
FAN09G4673 Fragaria x ananassa HOM05D003473 ORTHO05D003872 8.1e-22 107.8 134 41.8
TWI56G1190 Tripterygium wilfordii HOM05D003473 ORTHO05D003872 8.1e-22 107.8 134 41.8
Duzib128G0977 Durio zibethinus HOM05D003473 ORTHO05D003872 1.1e-21 107.5 134 42.5
Migut.F01540 Erythranthe guttata HOM05D003473 ORTHO05D003872 1.1e-21 107.5 134 43.3
FAN05G2419 Fragaria x ananassa HOM05D003473 ORTHO05D003872 1.1e-21 107.5 134 41.8
Glyma.20G223600 Glycine max HOM05D003473 ORTHO05D003872 1.1e-21 107.5 134 40.3
Hma1.2p1_1007F.1_g247110 Hydrangea macrophylla HOM05D003473 ORTHO05D003872 1.1e-21 107.5 134 41.0
Lj5g0017612 Lotus japonicus HOM05D003473 ORTHO05D003872 1.1e-21 107.5 134 40.3
VMungo0720G0613 Vigna mungo HOM05D003473 ORTHO05D003872 1.1e-21 107.5 134 39.6
Ciclev10019419m.g Citrus clementina HOM05D003473 ORTHO05D003872 2.4e-21 106.3 134 43.3
FvH4_6g01760 Fragaria vesca HOM05D003473 ORTHO05D003872 2.4e-21 106.3 134 41.8
FAN14G5108 Fragaria x ananassa HOM05D003473 ORTHO05D003872 2.4e-21 106.3 134 41.8
PGR142G0316 Punica granatum HOM05D003473 ORTHO05D003872 2.4e-21 106.3 134 40.3
Sc20g0000670 Simmondsia chinensis HOM05D003473 ORTHO05D003872 2.4e-21 106.3 134 41.8
GSVIVG01023451001 Vitis vinifera HOM05D003473 ORTHO05D003872 2.4e-21 106.3 132 43.2
Gohir.D11G256800 Gossypium hirsutum HOM05D003473 ORTHO05D003872 3.1e-21 105.9 134 40.3
Gorai.007G275200 Gossypium raimondii HOM05D003473 ORTHO05D003872 3.1e-21 105.9 134 40.3
HanXRQChr14g0454231 Helianthus annuus HOM05D003473 ORTHO05D003872 3.1e-21 105.9 134 42.5
Medtr1g080320 Medicago truncatula HOM05D003473 ORTHO05D003872 3.1e-21 105.9 134 41.0
FAN02G1417 Fragaria x ananassa HOM05D003473 ORTHO05D003872 4.0e-21 105.5 134 41.0
FAN05G0941 Fragaria x ananassa HOM05D003473 ORTHO05D003872 4.0e-21 105.5 134 41.0
Glyma.03G250300 Glycine max HOM05D003473 ORTHO05D003872 5.3e-21 105.1 134 38.1
Ca_10021_v3 Cicer arietinum L. HOM05D003473 ORTHO05D003872 6.9e-21 104.8 134 40.3
Ca_29585_v3 Cicer arietinum L. HOM05D003473 ORTHO05D003872 6.9e-21 104.8 134 40.3
arahy.Tifrunner.gnm1.ann1.F06EBP Arachis hypogaea HOM05D003473 ORTHO05D003872 9.0e-21 104.4 133 39.8
AUR62004830 Chenopodium quinoa HOM05D003473 ORTHO05D003872 9.0e-21 104.4 134 40.3
MD04G1231000 Malus domestica HOM05D003473 ORTHO05D003872 9.0e-21 104.4 134 39.6
ATR0736G092 Amborella trichopoda HOM05D003473 ORTHO05D003872 1.2e-20 104.0 134 39.6
CANSAT54G3011 Cannabis sativa HOM05D003473 ORTHO05D003872 1.2e-20 104.0 134 39.6
EL10Ac4g08995 Beta vulgaris HOM05D003473 ORTHO05D003872 1.5e-20 103.6 134 39.6
Gohir.A11G246500 Gossypium hirsutum HOM05D003473 ORTHO05D003872 1.5e-20 103.6 134 39.6
Phvul.L001660 Phaseolus vulgaris HOM05D003473 ORTHO05D003872 1.5e-20 103.6 134 39.6
TPR.G6958 Trifolium pratense HOM05D003473 ORTHO05D003872 1.5e-20 103.6 133 39.1
AUR62040917 Chenopodium quinoa HOM05D003473 ORTHO05D003872 2.0e-20 103.2 134 40.3
FAN14G1733 Fragaria x ananassa HOM05D003473 ORTHO05D003872 2.0e-20 103.2 134 41.0
Manes.08G140000 Manihot esculenta HOM05D003473 ORTHO05D003872 2.0e-20 103.2 134 41.0
QL03p029857 Quercus lobata HOM05D003473 ORTHO05D003872 2.0e-20 103.2 134 39.6
TPR.G22327 Trifolium pratense HOM05D003473 ORTHO05D003872 2.0e-20 103.2 134 40.3
arahy.Tifrunner.gnm1.ann1.T51LW4 Arachis hypogaea HOM05D003473 ORTHO05D003872 2.6e-20 102.8 133 39.8
Cc02_g08740 Coffea canephora HOM05D003473 ORTHO05D003872 2.6e-20 102.8 153 38.6
Glyma.10G165600 Glycine max HOM05D003473 ORTHO05D003872 2.6e-20 102.8 134 39.6
Hma1.2p1_1007F.1_g247120 Hydrangea macrophylla HOM05D003473 ORTHO05D003872 3.4e-20 102.4 134 38.1
Lj3g0009325 Lotus japonicus HOM05D003473 ORTHO05D003872 3.4e-20 102.4 134 39.6
Lalb_Chr06g0168251 Lupinus albus HOM05D003473 ORTHO05D003872 3.4e-20 102.4 134 40.3
MD12G1249300 Malus domestica HOM05D003473 ORTHO05D003872 4.5e-20 102.1 134 39.6
Psat3g006840 Pisum sativum HOM05D003473 ORTHO05D003872 4.5e-20 102.1 134 38.8
Psat6g143640 Pisum sativum HOM05D003473 ORTHO05D003872 4.5e-20 102.1 134 40.3
Potri.019G019800 Populus trichocarpa HOM05D003473 ORTHO05D003872 5.8e-20 101.7 134 40.3
Prupe.6G350700 Prunus persica HOM05D003473 ORTHO05D003872 7.6e-20 101.3 134 39.6
HPP92_020845 Vanilla planifolia HOM05D003473 ORTHO05D003872 1.3e-19 100.5 134 38.1
Lalb_Chr02g0149051 Lupinus albus HOM05D003473 ORTHO05D003872 2.2e-19 99.8 134 38.8
Cfa006361 Carpinus fangiana HOM05D003473 ORTHO05D003872 3.8e-19 99.0 133 39.8
Potri.013G047600 Populus trichocarpa HOM05D003473 ORTHO05D003872 3.8e-19 99.0 134 38.8
arahy.Tifrunner.gnm1.ann1.K8P0T6 Arachis hypogaea HOM05D003473 ORTHO05D003872 4.9e-19 98.6 134 38.1
Eucgr.B02152 Eucalyptus grandis HOM05D003473 ORTHO05D003872 4.9e-19 98.6 134 39.6
Medtr7g115570 Medicago truncatula HOM05D003473 ORTHO05D003872 8.4e-19 97.8 133 38.3
Ca_09457_v3 Cicer arietinum L. HOM05D003473 ORTHO05D003872 1.9e-18 96.7 134 37.3
Carub.0048s0001 Capsella rubella HOM05D003473 ORTHO05D003872 9.3e-18 94.4 134 38.8
Haze_04416 Corylus avellana HOM05D003473 ORTHO05D003872 1.2e-17 94.0 132 38.6
Eucgr.B02425 Eucalyptus grandis HOM05D003473 ORTHO05D003872 1.2e-17 94.0 134 38.8
Os02g0809500 Oryza sativa ssp. japonica HOM05D003473 ORTHO05D003872 8.7e-16 87.8 76 51.3
DCAR_030978 Daucus carota HOM05D003473 ORTHO05D003872 3.3e-15 85.9 137 37.2
Carub.0006s2615 Capsella rubella HOM05D003473 ORTHO05D003872 4.3e-15 85.5 58 60.3
SEGI_32914 Sequoiadendron giganteum HOM05D003473 ORTHO05D003872 4.3e-15 85.5 76 51.3
vmacro10372 Vaccinium macrocarpon HOM05D003473 ORTHO05D003872 9.6e-15 84.3 186 31.2
SMO351G0391 Selaginella moellendorffii HOM05D003473 ORTHO05D003872 5.5e-10 68.6 76 36.8
AagrBONN_evm.TU.Sc2ySwM_344.2742 Anthoceros agrestis HOM05D003473 ORTHO05D003872 1.0e-08 64.3 136 32.4
CDE08G1169 Ceratophyllum demersum HOM05D003473 ORTHO05D003872 1.3e-08 63.9 135 30.4
SMO351G0042 Selaginella moellendorffii HOM05D003473 ORTHO05D003872 1.3e-08 63.9 97 33.0
SMO241G0001 Selaginella moellendorffii HOM05D003473 ORTHO05D003872 2.5e-07 59.7 78 41.0
SMO116G0126 Selaginella moellendorffii HOM05D003473 ORTHO05D003872 5.7e-07 58.5 70 34.3
AagrBONN_evm.TU.Sc2ySwM_228.1748 Anthoceros agrestis HOM05D003473 ORTHO05D003872 1.3e-06 57.4 125 30.4
AagrBONN_evm.TU.Sc2ySwM_344.2023 Anthoceros agrestis HOM05D003473 ORTHO05D003872 2.2e-06 56.6 139 26.6


User provided reference genes

Program Settings