Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold154G37183 Striga asiatica HOM05D006174 ORTHO05D007987 1.7e-70 269.2 134 100.0
SGA_v2.0_scaffold75G24945 Striga asiatica HOM05D006174 ORTHO05D007987 6.6e-35 151.0 114 74.6
Migut.N03269 Erythranthe guttata HOM05D006174 ORTHO05D007987 3.2e-21 105.5 95 58.9
SalBow2G2495 Salvia bowleyana HOM05D006174 ORTHO05D007987 5.4e-21 104.8 95 57.9
BcaC09g50568 Brassica carinata HOM05D006174 ORTHO05D007987 1.8e-16 89.7 92 50.0
BolC1t02330H Brassica oleracea HOM05D006174 ORTHO05D007987 1.8e-16 89.7 92 50.0
CARHR070890 Cardamine hirsuta HOM05D006174 ORTHO05D007987 3.1e-16 89.0 92 50.0
C01p23850 Brassica napus HOM05D006174 ORTHO05D007987 8.9e-16 87.4 92 48.9
AL2G37610 Arabidopsis lyrata HOM05D006174 ORTHO05D007987 2.6e-15 85.9 92 50.0
Sp5g32560 Schrenkiella parvula HOM05D006174 ORTHO05D007987 4.4e-15 85.1 91 49.5
A01p18890 Brassica napus HOM05D006174 ORTHO05D007987 5.8e-15 84.7 92 47.8
A01p18900 Brassica napus HOM05D006174 ORTHO05D007987 5.8e-15 84.7 92 47.8
BraA01t01830Z Brassica rapa HOM05D006174 ORTHO05D007987 5.8e-15 84.7 92 47.8
BraA01t01831Z Brassica rapa HOM05D006174 ORTHO05D007987 5.8e-15 84.7 92 47.8
Oeu001538.1 Olea europaea HOM05D006174 ORTHO05D007987 7.6e-15 84.3 91 54.9
AT1G77405 Arabidopsis thaliana HOM05D006174 ORTHO05D007987 1.3e-14 83.6 92 47.8
Carub.0002s2430 Capsella rubella HOM05D006174 ORTHO05D007987 1.3e-14 83.6 97 46.4
Thhalv10019853m.g Eutrema salsugineum HOM05D006174 ORTHO05D007987 2.2e-14 82.8 92 46.7
BcaB05g25044 Brassica carinata HOM05D006174 ORTHO05D007987 3.7e-14 82.0 99 47.5
THA.LOC104800212 Tarenaya hassleriana HOM05D006174 ORTHO05D007987 3.7e-14 82.0 92 48.9
Lsat_1_v5_gn_4_117540 Lactuca sativa HOM05D006174 ORTHO05D007987 1.9e-13 79.7 97 48.5
QL09p033206 Quercus lobata HOM05D006174 ORTHO05D007987 4.1e-13 78.6 102 42.2
Nitab4.5_0005499g0020 Nicotiana tabacum HOM05D006174 ORTHO05D007987 5.4e-13 78.2 99 47.5
CAN.G1352.3 Capsicum annuum HOM05D006174 ORTHO05D007987 7.1e-13 77.8 99 43.4
Haze_17519 Corylus avellana HOM05D006174 ORTHO05D007987 7.1e-13 77.8 96 45.8
Potri.002G080300 Populus trichocarpa HOM05D006174 ORTHO05D007987 7.1e-13 77.8 105 47.6
Solyc08g029150.3 Solanum lycopersicum HOM05D006174 ORTHO05D007987 7.1e-13 77.8 81 55.6
PGR044G0496 Punica granatum HOM05D006174 ORTHO05D007987 9.2e-13 77.4 88 48.9
Cfa018561 Carpinus fangiana HOM05D006174 ORTHO05D007987 1.2e-12 77.0 100 46.0
Cpa.g.sc64.130 Carica papaya HOM05D006174 ORTHO05D007987 1.6e-12 76.6 81 51.9
Sopen08g010060 Solanum pennellii HOM05D006174 ORTHO05D007987 1.6e-12 76.6 79 55.7
Aa31LG4G7430 Aethionema arabicum HOM05D006174 ORTHO05D007987 2.7e-12 75.9 90 43.3
Lj7C346T1 Lonicera japonica HOM05D006174 ORTHO05D007987 2.7e-12 75.9 107 43.0
BcaC03g15734 Brassica carinata HOM05D006174 ORTHO05D007987 7.8e-12 74.3 86 47.7
Duzib093G0805 Durio zibethinus HOM05D006174 ORTHO05D007987 7.8e-12 74.3 92 43.5
Actinidia21299 Actinidia chinensis HOM05D006174 ORTHO05D007987 1.0e-11 73.9 95 44.2
CSS0047085 Camellia sinensis var. sinensis HOM05D006174 ORTHO05D007987 1.7e-11 73.2 95 43.2
CiPaw.15G033800 Carya illinoinensis HOM05D006174 ORTHO05D007987 2.3e-11 72.8 101 44.6
Peaxi162Scf00310g00046 Petunia axillaris HOM05D006174 ORTHO05D007987 2.3e-11 72.8 99 44.4
COL.COLO4_03953 Corchorus olitorius HOM05D006174 ORTHO05D007987 3.9e-11 72.0 88 43.2
Gohir.A06G046700 Gossypium hirsutum HOM05D006174 ORTHO05D007987 3.9e-11 72.0 99 40.4
Nitab4.5_0000111g0120 Nicotiana tabacum HOM05D006174 ORTHO05D007987 3.9e-11 72.0 100 45.0
Dinv14652 Davidia involucrata HOM05D006174 ORTHO05D007987 8.6e-11 70.9 88 44.3
MELO3C025482.2 Cucumis melo HOM05D006174 ORTHO05D007987 1.1e-10 70.5 96 42.7
Eucgr.F04334 Eucalyptus grandis HOM05D006174 ORTHO05D007987 1.1e-10 70.5 93 43.0
FvH4_2g27550 Fragaria vesca HOM05D006174 ORTHO05D007987 1.1e-10 70.5 105 41.0
FAN15G2863 Fragaria x ananassa HOM05D006174 ORTHO05D007987 1.1e-10 70.5 105 41.0
FAN24G3105 Fragaria x ananassa HOM05D006174 ORTHO05D007987 1.1e-10 70.5 105 41.0
FAN27G1425 Fragaria x ananassa HOM05D006174 ORTHO05D007987 1.1e-10 70.5 105 40.0
FAN20G1065 Fragaria x ananassa HOM05D006174 ORTHO05D007987 1.5e-10 70.1 105 41.0
Gohir.D06G047100 Gossypium hirsutum HOM05D006174 ORTHO05D007987 1.5e-10 70.1 99 39.4
Gorai.010G052600 Gossypium raimondii HOM05D006174 ORTHO05D007987 1.5e-10 70.1 99 39.4
CsaV3_5G026160 Cucumis sativus L. HOM05D006174 ORTHO05D007987 1.9e-10 69.7 96 42.7
RcHm_v2.0_Chr4g0420811 Rosa chinensis HOM05D006174 ORTHO05D007987 1.9e-10 69.7 85 47.1
GSVIVG01008474001 Vitis vinifera HOM05D006174 ORTHO05D007987 1.9e-10 69.7 82 50.0
ECA232G2008 Erigeron canadensis HOM05D006174 ORTHO05D007987 2.5e-10 69.3 92 43.5
Sed0011313 Sechium edule HOM05D006174 ORTHO05D007987 3.3e-10 68.9 95 42.1
PGSC0003DMG400006019 Solanum tuberosum HOM05D006174 ORTHO05D007987 3.3e-10 68.9 86 48.8
ClCG11G015920 Citrullus lanatus HOM05D006174 ORTHO05D007987 5.6e-10 68.2 96 42.7
TAR336G0003 Trochodendron aralioides HOM05D006174 ORTHO05D007987 5.6e-10 68.2 100 43.0
Rhsim01G0212900 Rhododendron simsii HOM05D006174 ORTHO05D007987 7.3e-10 67.8 109 39.4
Thecc.08G130300 Theobroma cacao HOM05D006174 ORTHO05D007987 7.3e-10 67.8 88 42.0
Aqoxy3G03207 Aquilegia oxysepala HOM05D006174 ORTHO05D007987 1.2e-09 67.0 91 45.1
HanXRQChr11g0326181 Helianthus annuus HOM05D006174 ORTHO05D007987 1.2e-09 67.0 97 42.3
Sabra05G0137100 Salix brachista HOM05D006174 ORTHO05D007987 2.1e-09 66.2 84 46.4
vmacro17639 Vaccinium macrocarpon HOM05D006174 ORTHO05D007987 2.1e-09 66.2 98 41.8
CANSAT56G3042 Cannabis sativa HOM05D006174 ORTHO05D007987 3.6e-09 65.5 91 42.9
Lalb_Chr17g0343621 Lupinus albus HOM05D006174 ORTHO05D007987 3.6e-09 65.5 93 43.0
Phvul.001G090600 Phaseolus vulgaris HOM05D006174 ORTHO05D007987 4.7e-09 65.1 111 38.7
Nn2g10369 Nelumbo nucifera HOM05D006174 ORTHO05D007987 6.2e-09 64.7 95 43.2
PSO832G2909 Papaver somniferum HOM05D006174 ORTHO05D007987 6.2e-09 64.7 104 40.4
TWI34G0515 Tripterygium wilfordii HOM05D006174 ORTHO05D007987 1.1e-08 63.9 91 41.8
MD00G1030400 Malus domestica HOM05D006174 ORTHO05D007987 1.4e-08 63.5 93 39.8
Manes.18G080300 Manihot esculenta HOM05D006174 ORTHO05D007987 2.4e-08 62.8 97 46.4
AUR62031996 Chenopodium quinoa HOM05D006174 ORTHO05D007987 6.8e-08 61.2 102 38.2
Nn8g40873 Nelumbo nucifera HOM05D006174 ORTHO05D007987 8.9e-08 60.8 120 36.7
Ciclev10003743m.g Citrus clementina HOM05D006174 ORTHO05D007987 1.2e-07 60.5 93 40.9
Glyma.19G099200 Glycine max HOM05D006174 ORTHO05D007987 1.2e-07 60.5 85 43.5
MBI03_g29283_MAGBIO Magnolia biondii HOM05D006174 ORTHO05D007987 1.2e-07 60.5 118 36.4
AUR62041512 Chenopodium quinoa HOM05D006174 ORTHO05D007987 2.0e-07 59.7 103 37.9
Lj1g0022003 Lotus japonicus HOM05D006174 ORTHO05D007987 2.6e-07 59.3 91 40.7
Atru.chr13.1536 Acer truncatum HOM05D006174 ORTHO05D007987 3.4e-07 58.9 94 38.3
EL10Ac5g12247 Beta vulgaris HOM05D006174 ORTHO05D007987 4.4e-07 58.5 85 43.5
Prupe.1G492400 Prunus persica HOM05D006174 ORTHO05D007987 4.4e-07 58.5 88 39.8
VMungo1080G1789 Vigna mungo HOM05D006174 ORTHO05D007987 4.4e-07 58.5 102 37.3
ATR0751G052 Amborella trichopoda HOM05D006174 ORTHO05D007987 5.8e-07 58.2 86 37.2
arahy.Tifrunner.gnm1.ann1.9UW3CC Arachis hypogaea HOM05D006174 ORTHO05D007987 2.9e-06 55.8 90 41.1
C03p74160 Brassica napus HOM05D006174 ORTHO05D007987 4.9e-06 55.1 51 51.0
Nn7g36521 Nelumbo nucifera HOM05D006174 ORTHO05D007987 4.9e-06 55.1 85 41.2
DCAR_014377 Daucus carota HOM05D006174 ORTHO05D007987 8.4e-06 54.3 80 38.8


User provided reference genes

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