Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold154G37089 Striga asiatica HOM05D000003 ORTHO05D011148 5.3e-65 250.8 117 100.0
PGR031G0166 Punica granatum HOM05D000155 ORTHO05D000022 2.5e-14 82.4 62 56.5
Manes.13G092620 Manihot esculenta HOM05D000003 ORTHO05D000004 4.7e-13 78.2 63 50.8
Manes.12G129601 Manihot esculenta HOM05D000003 ORTHO05D011148 1.2e-11 73.6 58 55.2
THA.LOC104799794 Tarenaya hassleriana HOM05D000003 ORTHO05D000004 4.9e-10 68.2 63 42.9
FvH4_1g24182 Fragaria vesca HOM05D000003 ORTHO05D000004 1.9e-09 66.2 66 42.4
Ciclev10014034m.g Citrus clementina HOM05D005165 ORTHO05D006361 3.2e-09 65.5 78 39.7
LjContig00357g0004525 Lotus japonicus HOM05D000003 ORTHO05D000022 4.1e-09 65.1 65 43.1
Thecc.01G193900 Theobroma cacao HOM05D015157 ORTHO05D011148 7.1e-09 64.3 103 33.0
RcHm_v2.0_Chr2g0144631 Rosa chinensis HOM05D000003 ORTHO05D000022 9.2e-09 63.9 83 32.5
RcHm_v2.0_Chr1g0351011 Rosa chinensis HOM05D000003 ORTHO05D000004 2.1e-08 62.8 59 44.1
SGA_v2.0_scaffold232G43526 Striga asiatica HOM05D015157 ORTHO05D011148 4.6e-08 61.6 65 44.6
RcHm_v2.0_Chr4g0406871 Rosa chinensis HOM05D000003 ORTHO05D000004 6.0e-08 61.2 84 32.1
Lj6g0017573 Lotus japonicus HOM05D000003 ORTHO05D000004 7.8e-08 60.8 65 43.1
Manes.06G020101 Manihot esculenta HOM05D000003 ORTHO05D000004 1.0e-07 60.5 67 38.8
CSS0032702 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000022 1.3e-07 60.1 87 35.6
Lj4g0003656 Lotus japonicus HOM05D000003 ORTHO05D000007 1.3e-07 60.1 63 38.1
FvH4_6g25500 Fragaria vesca HOM05D000003 ORTHO05D000007 3.0e-07 58.9 60 41.7
CSS0041590 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000022 3.9e-07 58.5 86 34.9
CSS0032736 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000022 5.1e-07 58.2 87 34.5
PGR119G2417 Punica granatum HOM05D000003 ORTHO05D000004 5.1e-07 58.2 57 45.6
AUR62034895 Chenopodium quinoa HOM05D000003 ORTHO05D000022 8.6e-07 57.4 62 43.5
RcHm_v2.0_Chr1g0321741 Rosa chinensis HOM05D000003 ORTHO05D012910 1.1e-06 57.0 60 38.3
RcHm_v2.0_Chr1g0382551 Rosa chinensis HOM05D000003 ORTHO05D000004 1.1e-06 57.0 62 38.7
Aqoxy3G01132 Aquilegia oxysepala HOM05D013665 ORTHO05D017373 1.5e-06 56.6 59 40.7
Aqoxy4G01607 Aquilegia oxysepala HOM05D013665 ORTHO05D011148 1.5e-06 56.6 59 40.7
Thecc.06G023800 Theobroma cacao HOM05D000003 ORTHO05D000006 1.5e-06 56.6 60 40.0
EL10Ac5g10920 Beta vulgaris HOM05D000003 ORTHO05D012910 3.3e-06 55.5 63 39.7
AUR62030068 Chenopodium quinoa HOM05D000003 ORTHO05D000004 3.3e-06 55.5 64 34.4
CSS0009370 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000022 4.3e-06 55.1 72 34.7
AUR62040127 Chenopodium quinoa HOM05D000003 ORTHO05D000004 4.3e-06 55.1 61 41.0
Prupe.4G161900 Prunus persica HOM05D000003 ORTHO05D000022 4.3e-06 55.1 64 40.6
CSS0038037 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000022 5.6e-06 54.7 72 33.3
COL.COLO4_22232 Corchorus olitorius HOM05D000003 ORTHO05D000004 5.6e-06 54.7 62 41.9
RcHm_v2.0_Chr7g0182091 Rosa chinensis HOM05D000003 ORTHO05D000004 5.6e-06 54.7 65 40.0
Prupe.6G118100 Prunus persica HOM05D000003 ORTHO05D000022 9.5e-06 53.9 64 39.1
Prupe.6G201000 Prunus persica HOM05D000003 ORTHO05D000022 9.5e-06 53.9 64 39.1
RcHm_v2.0_Chr5g0018821 Rosa chinensis HOM05D000003 ORTHO05D000022 9.5e-06 53.9 64 40.6
TPR.G18100 Trifolium pratense HOM05D000003 ORTHO05D000004 9.5e-06 53.9 111 31.5


User provided reference genes

Program Settings