Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold153G37063 Striga asiatica HOM05D002977 ORTHO05D003225 1.1e-206 723.0 364 100.0
SalBow3G1388 Salvia bowleyana HOM05D002977 ORTHO05D003225 5.0e-53 212.6 383 41.5
MSTRG.20788 Avicennia marina HOM05D002977 ORTHO05D003225 4.2e-44 183.0 393 38.9
CSS0040991 Camellia sinensis var. sinensis HOM05D002977 ORTHO05D003225 1.8e-42 177.6 382 36.4
Peaxi162Scf00021g00041 Petunia axillaris HOM05D002977 ORTHO05D003225 4.2e-36 156.4 439 33.3
Cc02_g37200 Coffea canephora HOM05D002977 ORTHO05D003225 9.5e-36 155.2 388 33.8
Solyc01g091830.3 Solanum lycopersicum HOM05D002977 ORTHO05D003225 9.8e-33 145.2 399 31.8
PGSC0003DMG400017053 Solanum tuberosum HOM05D002977 ORTHO05D003225 1.7e-32 144.4 398 31.9
Sopen01g037600 Solanum pennellii HOM05D002977 ORTHO05D003225 8.3e-32 142.1 399 31.3
Nitab4.5_0000134g0230 Nicotiana tabacum HOM05D002977 ORTHO05D003225 1.1e-31 141.7 397 34.0
Peaxi162Scf00233g00015 Petunia axillaris HOM05D002977 ORTHO05D003225 1.4e-31 141.4 418 32.1
Migut.B01683 Erythranthe guttata HOM05D002977 ORTHO05D003225 5.4e-31 139.4 424 33.0
CAN.G170.54 Capsicum annuum HOM05D002977 ORTHO05D003225 3.5e-30 136.7 436 31.2
Nitab4.5_0004550g0040 Nicotiana tabacum HOM05D002977 ORTHO05D003225 2.5e-28 130.6 432 30.8
Hma1.2p1_0132F.1_g060810 Hydrangea macrophylla HOM05D002977 ORTHO05D003225 3.6e-27 126.7 410 32.4
Actinidia33447 Actinidia chinensis HOM05D002977 ORTHO05D003225 1.0e-26 125.2 394 30.7
Oeu024421.1 Olea europaea HOM05D002977 ORTHO05D003225 2.3e-26 124.0 380 32.1
Oeu024422.1 Olea europaea HOM05D002977 ORTHO05D003225 5.2e-26 122.9 380 32.1
COL.COLO4_06963 Corchorus olitorius HOM05D002977 ORTHO05D003225 1.5e-25 121.3 455 28.8
Nitab4.5_0003356g0060 Nicotiana tabacum HOM05D002977 ORTHO05D003225 4.4e-25 119.8 396 32.8
vmacro20976 Vaccinium macrocarpon HOM05D002977 ORTHO05D003225 9.8e-25 118.6 409 27.9
Oeu059227.1 Olea europaea HOM05D002977 ORTHO05D003225 3.7e-24 116.7 384 31.5
Oeu059228.1 Olea europaea HOM05D002977 ORTHO05D003225 3.7e-24 116.7 384 31.5
Potri.014G077400 Populus trichocarpa HOM05D002977 ORTHO05D003225 6.4e-24 115.9 476 29.0
Thecc.01G369200 Theobroma cacao HOM05D002977 ORTHO05D003225 3.2e-23 113.6 249 32.9
Duzib138G0317 Durio zibethinus HOM05D002977 ORTHO05D003225 9.2e-23 112.1 212 35.4
Dinv43754 Davidia involucrata HOM05D002977 ORTHO05D003225 2.7e-22 110.5 396 29.5
CiPaw.02G024700 Carya illinoinensis HOM05D002977 ORTHO05D003225 4.6e-22 109.8 216 36.1
Haze_15232 Corylus avellana HOM05D002977 ORTHO05D003225 1.7e-21 107.8 430 27.9
FAN10G1938 Fragaria x ananassa HOM05D002977 ORTHO05D003225 3.9e-21 106.7 426 27.9
FAN10G0205 Fragaria x ananassa HOM05D002977 ORTHO05D003225 6.6e-21 105.9 425 27.8
Potri.002G152700 Populus trichocarpa HOM05D002977 ORTHO05D003225 8.6e-21 105.5 453 27.8
Cfa004177 Carpinus fangiana HOM05D002977 ORTHO05D003225 1.1e-20 105.1 201 36.8
Lsat_1_v5_gn_7_8261 Lactuca sativa HOM05D002977 ORTHO05D003225 1.1e-20 105.1 424 27.6
QL08p050716 Quercus lobata HOM05D002977 ORTHO05D003225 2.5e-20 104.0 415 28.2
DCAR_008585 Daucus carota HOM05D002977 ORTHO05D003225 4.3e-20 103.2 378 29.6
Duzib133G0091 Durio zibethinus HOM05D002977 ORTHO05D003225 4.3e-20 103.2 218 33.5
FvH4_7g12980 Fragaria vesca HOM05D002977 ORTHO05D003225 9.5e-20 102.1 423 27.7
Actinidia02049 Actinidia chinensis HOM05D002977 ORTHO05D003225 1.6e-19 101.3 242 30.2
GSVIVG01027598001 Vitis vinifera HOM05D002977 ORTHO05D003225 3.6e-19 100.1 380 27.1
Sabra02G0121100 Salix brachista HOM05D002977 ORTHO05D003225 1.4e-18 98.2 456 26.5
Sabra14G0054900 Salix brachista HOM05D002977 ORTHO05D003225 1.4e-18 98.2 468 26.3
FAN06G3334 Fragaria x ananassa HOM05D002977 ORTHO05D003225 3.1e-18 97.1 202 32.7
RcHm_v2.0_Chr1g0352121 Rosa chinensis HOM05D002977 ORTHO05D003225 1.2e-17 95.1 427 28.6
PGR042G2435 Punica granatum HOM05D002977 ORTHO05D003225 1.5e-17 94.7 443 27.5
Gohir.D08G197000 Gossypium hirsutum HOM05D002977 ORTHO05D003225 2.6e-17 94.0 214 31.3
Gorai.004G207700 Gossypium raimondii HOM05D002977 ORTHO05D003225 2.6e-17 94.0 214 31.3
Cfa012096 Carpinus fangiana HOM05D002524 ORTHO05D002718 4.4e-17 93.2 204 34.3
FAN06G4128 Fragaria x ananassa HOM05D002977 ORTHO05D003225 4.4e-17 93.2 431 26.9
HanXRQChr06g0168991 Helianthus annuus HOM05D002977 ORTHO05D003225 5.8e-17 92.8 197 31.5
ECA236G0338 Erigeron canadensis HOM05D002977 ORTHO05D003225 1.3e-16 91.7 389 27.2
Cpa.g.c33531 Carica papaya HOM05D002977 ORTHO05D003225 2.2e-16 90.9 430 27.0
Gohir.A08G178500 Gossypium hirsutum HOM05D002977 ORTHO05D003225 3.7e-16 90.1 214 30.4
MD01G1047600 Malus domestica HOM05D002977 ORTHO05D003225 3.7e-16 90.1 223 31.4
MD07G1125600 Malus domestica HOM05D002977 ORTHO05D003225 3.7e-16 90.1 205 32.2
COL.COLO4_05272 Corchorus olitorius HOM05D002977 ORTHO05D003225 6.4e-16 89.4 216 28.7
Prupe.2G153900 Prunus persica HOM05D002977 ORTHO05D003225 1.4e-15 88.2 440 25.2
QL12p017099 Quercus lobata HOM05D002977 ORTHO05D003225 1.4e-15 88.2 248 27.4
Ciclev10020246m.g Citrus clementina HOM05D002977 ORTHO05D003225 2.4e-15 87.4 442 28.3
Cc08_g13950 Coffea canephora HOM05D002977 ORTHO05D003225 2.4e-15 87.4 224 32.1
Potri.001G110900 Populus trichocarpa HOM05D002977 ORTHO05D003225 2.4e-15 87.4 237 29.5
FAN01G0110 Fragaria x ananassa HOM05D002977 ORTHO05D003225 3.2e-15 87.0 441 24.9
DCAR_006904 Daucus carota HOM05D002977 ORTHO05D003225 7.1e-15 85.9 371 27.8
TWI81G0253 Tripterygium wilfordii HOM05D002977 ORTHO05D003225 7.1e-15 85.9 207 30.9
Haze_08955 Corylus avellana HOM05D002977 ORTHO05D003225 1.2e-14 85.1 215 34.0
Migut.A00919 Erythranthe guttata HOM05D002977 ORTHO05D003225 1.2e-14 85.1 224 32.1
Solyc08g080280.3 Solanum lycopersicum HOM05D002977 ORTHO05D003225 1.6e-14 84.7 293 30.0
CANSAT56G0238 Cannabis sativa HOM05D002977 ORTHO05D003225 2.1e-14 84.3 196 32.7
Sopen08g028630 Solanum pennellii HOM05D002977 ORTHO05D003225 2.7e-14 84.0 293 28.3
Dinv37695 Davidia involucrata HOM05D002977 ORTHO05D003225 3.5e-14 83.6 220 30.0
Gohir.D08G150500 Gossypium hirsutum HOM05D002977 ORTHO05D003225 3.5e-14 83.6 374 25.9
Gohir.A08G129200 Gossypium hirsutum HOM05D002977 ORTHO05D003225 6.0e-14 82.8 377 27.6
Gorai.004G156200 Gossypium raimondii HOM05D002977 ORTHO05D003225 6.0e-14 82.8 377 27.3
Potri.003G121100 Populus trichocarpa HOM05D002977 ORTHO05D003225 6.0e-14 82.8 239 28.5
SGA_v2.0_scaffold196G40889 Striga asiatica HOM05D002977 ORTHO05D003225 6.0e-14 82.8 225 31.6
Glyma.03G017800 Glycine max HOM05D002977 ORTHO05D003225 7.8e-14 82.4 228 31.1
Atru.chr9.1537 Acer truncatum HOM05D002977 ORTHO05D003225 1.0e-13 82.0 216 31.0
Thecc.03G270800 Theobroma cacao HOM05D002977 ORTHO05D003225 1.3e-13 81.6 232 31.5
Sabra03G0085100 Salix brachista HOM05D002977 ORTHO05D003225 5.1e-13 79.7 258 27.9
SGA_v2.0_scaffold286G47104 Striga asiatica HOM05D002977 ORTHO05D003225 5.1e-13 79.7 223 33.2
Nitab4.5_0011100g0010 Nicotiana tabacum HOM05D002977 ORTHO05D003225 6.6e-13 79.3 248 28.2
VMungo0331G1467 Vigna mungo HOM05D002977 ORTHO05D003225 6.6e-13 79.3 412 26.7
Sabra01G0084500 Salix brachista HOM05D002977 ORTHO05D003225 1.1e-12 78.6 235 28.9
Eucgr.E00281 Eucalyptus grandis HOM05D002977 ORTHO05D003225 1.5e-12 78.2 428 25.7
PGSC0003DMG400022757 Solanum tuberosum HOM05D002977 ORTHO05D003225 1.5e-12 78.2 242 28.5
TWI60G0323 Tripterygium wilfordii HOM05D002977 ORTHO05D003225 1.5e-12 78.2 226 27.0
ECA233G2885 Erigeron canadensis HOM05D002977 ORTHO05D003225 2.5e-12 77.4 202 29.7
FAN18G2499 Fragaria x ananassa HOM05D002524 ORTHO05D002718 2.5e-12 77.4 222 32.4
MSTRG.25572 Avicennia marina HOM05D002977 ORTHO05D003225 3.3e-12 77.0 312 26.6
Prupe.5G089800 Prunus persica HOM05D002977 ORTHO05D003225 3.3e-12 77.0 220 28.2
Ciclev10023310m.g Citrus clementina HOM05D002977 ORTHO05D003225 4.3e-12 76.6 214 30.4
Manes.02G027900 Manihot esculenta HOM05D002977 ORTHO05D003225 4.3e-12 76.6 266 26.3
RcHm_v2.0_Chr7g0199421 Rosa chinensis HOM05D002977 ORTHO05D003225 4.3e-12 76.6 206 30.1
A03p32000 Brassica napus HOM05D002977 ORTHO05D003225 1.2e-11 75.1 202 31.2
Peaxi162Scf00714g00621 Petunia axillaris HOM05D002977 ORTHO05D003225 1.6e-11 74.7 307 27.7
CiPaw.11G141500 Carya illinoinensis HOM05D002977 ORTHO05D003225 2.1e-11 74.3 240 28.3
DCAR_006762 Daucus carota HOM05D002977 ORTHO05D003225 2.1e-11 74.3 118 30.5
Duzib205G0359 Durio zibethinus HOM05D002977 ORTHO05D003225 2.1e-11 74.3 226 28.8
Migut.E01299 Erythranthe guttata HOM05D002977 ORTHO05D003225 2.1e-11 74.3 223 28.7
Manes.01G262800 Manihot esculenta HOM05D002977 ORTHO05D003225 2.1e-11 74.3 393 24.4
CAN.G981.38 Capsicum annuum HOM05D002977 ORTHO05D003225 2.8e-11 73.9 285 25.6
FvH4_5g01430 Fragaria vesca HOM05D002977 ORTHO05D003225 2.8e-11 73.9 209 32.1
Atru.chr5.400 Acer truncatum HOM05D002977 ORTHO05D003225 3.6e-11 73.6 436 27.1
HanXRQChr07g0188421 Helianthus annuus HOM05D002977 ORTHO05D003225 3.6e-11 73.6 280 25.0
Nitab4.5_0001714g0160 Nicotiana tabacum HOM05D002977 ORTHO05D003225 4.7e-11 73.2 250 26.8
BraA03t12372Z Brassica rapa HOM05D002977 ORTHO05D003225 8.1e-11 72.4 201 31.3
CANSAT21G2154 Cannabis sativa HOM05D002977 ORTHO05D003225 8.1e-11 72.4 246 28.9
FAN04G2551 Fragaria x ananassa HOM05D002524 ORTHO05D002718 8.1e-11 72.4 210 31.4
AUR62010660 Chenopodium quinoa HOM05D002977 ORTHO05D003225 1.1e-10 72.0 186 29.0
Duzib084G1184 Durio zibethinus HOM05D002977 ORTHO05D003225 1.1e-10 72.0 239 27.6
AUR62017299 Chenopodium quinoa HOM05D002977 ORTHO05D003225 1.4e-10 71.6 191 28.3
Nn6g34271 Nelumbo nucifera HOM05D002977 ORTHO05D003225 1.8e-10 71.2 494 25.1
Nn1g01342 Nelumbo nucifera HOM05D002977 ORTHO05D003225 2.3e-10 70.9 273 24.9
BcaC01g06858 Brassica carinata HOM05D002977 ORTHO05D003225 4.0e-10 70.1 202 29.7
Medtr8g032770 Medicago truncatula HOM05D002977 ORTHO05D003225 5.2e-10 69.7 227 26.9
C03p39020 Brassica napus HOM05D002977 ORTHO05D003225 8.9e-10 68.9 203 29.6
BolC3t16174H Brassica oleracea HOM05D002977 ORTHO05D003225 8.9e-10 68.9 203 29.6
Glyma.07G079500 Glycine max HOM05D002977 ORTHO05D003225 8.9e-10 68.9 425 25.2
Manes.01G067700 Manihot esculenta HOM05D002977 ORTHO05D003225 8.9e-10 68.9 221 28.5
Ah.12g057650 Amaranthus hybridus HOM05D002977 ORTHO05D003225 2.0e-09 67.8 122 33.6
arahy.Tifrunner.gnm1.ann1.ELA92E Arachis hypogaea HOM05D002977 ORTHO05D003225 2.0e-09 67.8 223 25.1
arahy.Tifrunner.gnm1.ann1.BQI3IB Arachis hypogaea HOM05D002977 ORTHO05D003225 4.4e-09 66.6 226 25.7
Sp6g00770 Schrenkiella parvula HOM05D002977 ORTHO05D003225 5.8e-09 66.2 221 29.4
PGR042G2476 Punica granatum HOM05D002977 ORTHO05D003225 9.9e-09 65.5 287 27.2
Ca_23758_v3 Cicer arietinum L. HOM05D002977 ORTHO05D003225 1.7e-08 64.7 214 28.5
Aa31LG9G10650 Aethionema arabicum HOM05D002977 ORTHO05D003225 2.9e-08 63.9 248 22.6
arahy.Tifrunner.gnm1.ann1.YQQF81 Arachis hypogaea HOM05D002977 ORTHO05D003225 2.9e-08 63.9 207 25.6
Aqoxy7G00463 Aquilegia oxysepala HOM05D002977 ORTHO05D003225 3.7e-08 63.5 234 26.9
Lj3g0026127 Lotus japonicus HOM05D002977 ORTHO05D003225 4.9e-08 63.2 230 26.1
Hma1.2p1_0371F.1_g138190 Hydrangea macrophylla HOM05D002977 ORTHO05D003225 6.4e-08 62.8 102 32.4
Eucgr.E00527 Eucalyptus grandis HOM05D002977 ORTHO05D003225 8.4e-08 62.4 100 35.0
TAR629G3293 Trochodendron aralioides HOM05D002977 ORTHO05D003225 1.4e-07 61.6 246 26.8
Ah.02g116430 Amaranthus hybridus HOM05D002977 ORTHO05D003225 1.9e-07 61.2 123 32.5
THA.LOC104801463 Tarenaya hassleriana HOM05D002977 ORTHO05D003225 1.9e-07 61.2 275 26.5
Psat4g151680 Pisum sativum HOM05D002977 ORTHO05D003225 3.2e-07 60.5 211 27.5
arahy.Tifrunner.gnm1.ann1.XNH79U Arachis hypogaea HOM05D002977 ORTHO05D003225 5.4e-07 59.7 207 25.1
Hund28360 Selenicereus undatus HOM05D002977 ORTHO05D003225 7.1e-07 59.3 199 26.6
Hund28364 Selenicereus undatus HOM05D002977 ORTHO05D003225 7.1e-07 59.3 199 26.6
Lsat_1_v5_gn_6_13021 Lactuca sativa HOM05D002977 ORTHO05D003225 9.2e-07 58.9 223 25.1
Sc01g0008790 Simmondsia chinensis HOM05D002977 ORTHO05D003225 9.2e-07 58.9 68 38.2
AL6G52680 Arabidopsis lyrata HOM05D002977 ORTHO05D003225 1.2e-06 58.5 221 28.1
CARHR248960 Cardamine hirsuta HOM05D002977 ORTHO05D003225 1.2e-06 58.5 222 27.0
Carub.0006s3643 Capsella rubella HOM05D002977 ORTHO05D003225 1.6e-06 58.2 219 26.0
AL6G46490 Arabidopsis lyrata HOM05D002977 ORTHO05D003225 2.1e-06 57.8 238 24.4
Lalb_Chr05g0225091 Lupinus albus HOM05D002977 ORTHO05D003225 2.1e-06 57.8 122 32.0
MBI04_g42596_MAGBIO Magnolia biondii HOM05D002977 ORTHO05D003225 2.1e-06 57.8 204 28.9
CDE11G0380 Ceratophyllum demersum HOM05D055600 ORTHO05D003225 2.7e-06 57.4 204 26.5
Phvul.003G212900 Phaseolus vulgaris HOM05D002977 ORTHO05D003225 3.5e-06 57.0 134 29.1
Ca_20242_v3 Cicer arietinum L. HOM05D002977 ORTHO05D003225 4.6e-06 56.6 239 23.4
Ca_29496_v3 Cicer arietinum L. HOM05D002977 ORTHO05D003225 4.6e-06 56.6 239 23.4
Nitab4.5_0010430g0070 Nicotiana tabacum HOM05D002977 ORTHO05D003225 6.0e-06 56.2 135 40.7
Psat4g067560 Pisum sativum HOM05D002977 ORTHO05D003225 6.0e-06 56.2 208 21.6
TPR.G37675 Trifolium pratense HOM05D002977 ORTHO05D003225 6.0e-06 56.2 363 24.2
Lj4g0001816 Lotus japonicus HOM05D002977 ORTHO05D003225 7.8e-06 55.8 212 26.4
THA.LOC104806370 Tarenaya hassleriana HOM05D002977 ORTHO05D003225 7.8e-06 55.8 242 25.6


User provided reference genes

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