Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold153G37057 Striga asiatica HOM05D004815 ORTHO05D005742 5.0e-199 697.6 352 100.0
Migut.B01673 Erythranthe guttata HOM05D004815 ORTHO05D005742 7.8e-144 514.2 355 74.4
SalBow7G0216 Salvia bowleyana HOM05D004815 ORTHO05D005742 9.5e-142 507.3 410 65.4
MSTRG.20784 Avicennia marina HOM05D004815 ORTHO05D005742 1.8e-140 503.1 367 71.1
Cc02_g37080 Coffea canephora HOM05D004815 ORTHO05D005742 6.4e-138 494.6 368 68.5
CiPaw.01G257600 Carya illinoinensis HOM05D004815 ORTHO05D005742 6.2e-133 478.0 370 64.1
MD02G1195800 Malus domestica HOM05D004815 ORTHO05D005742 2.3e-132 476.1 370 64.9
Haze_16704 Corylus avellana HOM05D004815 ORTHO05D005742 6.8e-132 474.6 368 63.6
Atru.chr5.381_Atru.chr5.382 Acer truncatum HOM05D004815 ORTHO05D005742 1.2e-131 473.8 363 65.6
Cc09_g02920 Coffea canephora HOM05D004815 ORTHO05D005742 5.8e-131 471.5 367 65.7
Lj7C524T7 Lonicera japonica HOM05D004815 ORTHO05D005742 1.7e-130 469.9 357 67.5
Potri.002G152300 Populus trichocarpa HOM05D004815 ORTHO05D005742 3.7e-130 468.8 364 64.3
Potri.014G078300 Populus trichocarpa HOM05D004815 ORTHO05D005742 4.9e-130 468.4 362 65.2
TAR629G0568 Trochodendron aralioides HOM05D004815 ORTHO05D005742 6.4e-130 468.0 371 65.8
Cfa001810 Carpinus fangiana HOM05D004815 ORTHO05D005742 1.2e-128 463.8 370 61.9
Ciclev10020702m.g Citrus clementina HOM05D004815 ORTHO05D005742 6.0e-128 461.5 370 63.8
Nitab4.5_0013229g0020 Nicotiana tabacum HOM05D004815 ORTHO05D005742 1.0e-127 460.7 372 61.0
Duzib133G0793 Durio zibethinus HOM05D004815 ORTHO05D005742 1.3e-127 460.3 373 63.0
Actinidia31455 Actinidia chinensis HOM05D004815 ORTHO05D005742 1.7e-127 459.9 375 62.4
Lj3g0020425 Lotus japonicus HOM05D004815 ORTHO05D005742 5.1e-127 458.4 368 62.5
Oeu059223.1 Olea europaea HOM05D003859 ORTHO05D004927 5.1e-127 458.4 369 64.8
Medtr8g033040 Medicago truncatula HOM05D004815 ORTHO05D005742 8.6e-127 457.6 361 62.9
Ca_23774_v3 Cicer arietinum L. HOM05D004815 ORTHO05D005742 1.1e-126 457.2 356 63.5
Sabra14G0053800 Salix brachista HOM05D004815 ORTHO05D005742 1.1e-126 457.2 370 63.8
TPR.G17395 Trifolium pratense HOM05D004815 ORTHO05D005742 1.5e-126 456.8 363 63.9
RcHm_v2.0_Chr1g0351921 Rosa chinensis HOM05D004815 ORTHO05D005742 1.9e-126 456.4 370 61.6
PGSC0003DMG400000005 Solanum tuberosum HOM05D004815 ORTHO05D005742 2.5e-126 456.1 368 61.4
Solyc01g091900.3 Solanum lycopersicum HOM05D004815 ORTHO05D005742 3.3e-126 455.7 369 61.5
GSVIVG01027589001 Vitis vinifera HOM05D004815 ORTHO05D005742 4.3e-126 455.3 372 62.4
FAN01G1324 Fragaria x ananassa HOM05D004815 ORTHO05D005742 1.2e-125 453.8 371 62.3
Lalb_Chr17g0340041 Lupinus albus HOM05D004815 ORTHO05D005742 2.8e-125 452.6 368 61.4
TWI23G0970 Tripterygium wilfordii HOM05D004815 ORTHO05D005742 2.8e-125 452.6 359 62.7
FAN10G2694 Fragaria x ananassa HOM05D004815 ORTHO05D005742 8.1e-125 451.1 370 62.2
Gorai.001G172600 Gossypium raimondii HOM05D004815 ORTHO05D005742 1.1e-124 450.7 371 60.9
Cpa.g.sc18.178 Carica papaya HOM05D004815 ORTHO05D005742 2.3e-124 449.5 369 62.6
Gohir.A07G144600 Gossypium hirsutum HOM05D004815 ORTHO05D005742 4.0e-124 448.7 371 60.9
TAR636G2513 Trochodendron aralioides HOM05D004815 ORTHO05D005742 5.2e-124 448.4 369 62.3
CAN.G170.62 Capsicum annuum HOM05D004815 ORTHO05D005742 1.2e-123 447.2 368 61.4
Gohir.D07G150500 Gossypium hirsutum HOM05D004815 ORTHO05D005742 2.0e-123 446.4 371 60.9
Manes.05G040900 Manihot esculenta HOM05D004815 ORTHO05D005742 2.0e-123 446.4 369 61.0
DCAR_006900 Daucus carota HOM05D004815 ORTHO05D005742 3.4e-123 445.7 338 67.8
TPR.G17590 Trifolium pratense HOM05D004815 ORTHO05D005742 3.4e-123 445.7 361 63.2
CANSAT56G0719 Cannabis sativa HOM05D004815 ORTHO05D005742 1.3e-122 443.7 377 61.3
Manes.01G263200 Manihot esculenta HOM05D004815 ORTHO05D005742 1.3e-122 443.7 373 61.7
Thecc.01G370200 Theobroma cacao HOM05D004815 ORTHO05D005742 1.3e-122 443.7 368 61.4
PGR031G2979 Punica granatum HOM05D004815 ORTHO05D005742 2.2e-122 443.0 365 60.8
AUR62033376 Chenopodium quinoa HOM05D004815 ORTHO05D005742 1.9e-121 439.9 368 61.7
TWI59G0538 Tripterygium wilfordii HOM05D004815 ORTHO05D005742 1.9e-121 439.9 371 60.1
CsaV3_6G005940 Cucumis sativus L. HOM05D004815 ORTHO05D005742 3.2e-121 439.1 370 58.4
arahy.Tifrunner.gnm1.ann1.GZV6IQ Arachis hypogaea HOM05D004815 ORTHO05D005742 4.1e-121 438.7 363 62.0
MELO3C022521.2 Cucumis melo HOM05D004815 ORTHO05D005742 7.1e-121 438.0 370 57.8
arahy.Tifrunner.gnm1.ann1.32Q5MD Arachis hypogaea HOM05D004815 ORTHO05D005742 1.6e-120 436.8 363 62.0
Glyma.03G018700 Glycine max HOM05D004815 ORTHO05D005742 3.5e-120 435.6 368 60.6
unitig_749.g14360 Utricularia gibba HOM05D003518 ORTHO05D005164 3.0e-119 432.6 343 66.5
FAN06G3277 Fragaria x ananassa HOM05D004815 ORTHO05D005742 3.9e-119 432.2 368 60.3
FAN06G3416 Fragaria x ananassa HOM05D004815 ORTHO05D005742 3.9e-119 432.2 368 60.3
Lalb_Chr10g0097591 Lupinus albus HOM05D004815 ORTHO05D005742 6.6e-119 431.4 370 59.5
EL10Ac1g00976 Beta vulgaris HOM05D004815 ORTHO05D005742 3.3e-118 429.1 369 59.3
Aqoxy7G00483 Aquilegia oxysepala HOM05D004815 ORTHO05D005742 3.6e-117 425.6 368 60.1
Peaxi162Scf00021g00232 Petunia axillaris HOM05D004815 ORTHO05D005742 2.4e-116 422.9 345 63.2
Sp4g27730 Schrenkiella parvula HOM05D004815 ORTHO05D005742 4.0e-116 422.2 374 58.3
HanXRQChr06g0169351 Helianthus annuus HOM05D004815 ORTHO05D005742 1.5e-115 420.2 357 60.5
Rhsim07G0022400 Rhododendron simsii HOM05D004815 ORTHO05D005742 1.5e-115 420.2 362 59.4
BcaB01g03258 Brassica carinata HOM05D004815 ORTHO05D005742 2.0e-115 419.9 367 58.3
ECA236G5005 Erigeron canadensis HOM05D004815 ORTHO05D005742 4.4e-115 418.7 362 61.3
VMungo0331G0142 Vigna mungo HOM05D004815 ORTHO05D005742 4.4e-115 418.7 367 60.5
Aa31LG1G27160 Aethionema arabicum HOM05D004815 ORTHO05D005742 5.8e-115 418.3 372 57.8
BraA05t19537Z Brassica rapa HOM05D004815 ORTHO05D005742 1.3e-114 417.2 370 58.4
Psat4g200880 Pisum sativum HOM05D004815 ORTHO05D005742 1.7e-114 416.8 339 62.8
BcaC02g12192 Brassica carinata HOM05D004815 ORTHO05D005742 3.8e-114 415.6 370 58.4
A05p05650 Brassica napus HOM05D004815 ORTHO05D005742 3.8e-114 415.6 368 58.4
BolC4t22283H Brassica oleracea HOM05D004815 ORTHO05D005742 1.4e-113 413.7 370 58.1
Sc02g0002260 Simmondsia chinensis HOM05D004815 ORTHO05D005742 3.2e-113 412.5 356 59.0
AL4G44860 Arabidopsis lyrata HOM05D004815 ORTHO05D005742 5.4e-113 411.8 372 57.8
Glyma.07G080200 Glycine max HOM05D004815 ORTHO05D005742 9.3e-113 411.0 351 60.7
Sed0027777 Sechium edule HOM05D004815 ORTHO05D005742 9.3e-113 411.0 372 55.4
Thhalv10001499m.g Eutrema salsugineum HOM05D004815 ORTHO05D005742 2.1e-112 409.8 371 57.1
PSO478G4379 Papaver somniferum HOM05D004815 ORTHO05D005742 2.3e-111 406.4 364 58.5
PSO782G2788 Papaver somniferum HOM05D004815 ORTHO05D005742 2.3e-111 406.4 368 58.4
C03p30200 Brassica napus HOM05D004815 ORTHO05D005742 3.9e-111 405.6 372 57.8
BcaB02g09018 Brassica carinata HOM05D004815 ORTHO05D005742 8.7e-111 404.4 379 55.7
A03p25310 Brassica napus HOM05D004815 ORTHO05D005742 8.7e-111 404.4 369 56.6
MBI04_g28567_MAGBIO Magnolia biondii HOM05D004815 ORTHO05D005742 1.1e-110 404.1 355 59.4
Lsat_1_v5_gn_7_8041 Lactuca sativa HOM05D004815 ORTHO05D005742 2.5e-110 402.9 343 61.2
Solyc06g074460.4 Solanum lycopersicum HOM05D004815 ORTHO05D005742 2.5e-110 402.9 370 54.9
BcaC01g05112 Brassica carinata HOM05D004815 ORTHO05D005742 4.3e-110 402.1 375 57.1
Carub.0004s2834 Capsella rubella HOM05D004815 ORTHO05D005742 7.3e-110 401.4 376 55.9
Sopen06g030930 Solanum pennellii HOM05D004815 ORTHO05D005742 7.3e-110 401.4 370 54.3
Sabra02G0120600 Salix brachista HOM05D004815 ORTHO05D005742 9.6e-110 401.0 364 58.0
BolC3t15369H Brassica oleracea HOM05D004815 ORTHO05D005742 2.8e-109 399.4 374 56.7
vmacro13348 Vaccinium macrocarpon HOM05D004815 ORTHO05D005742 8.1e-109 397.9 395 54.4
Lalb_Chr19g0127171 Lupinus albus HOM05D004815 ORTHO05D005742 1.5e-107 393.7 375 56.5
AT2G45690 Arabidopsis thaliana HOM05D004815 ORTHO05D005742 5.8e-107 391.7 369 55.3
Hund27330 Selenicereus undatus HOM05D004815 ORTHO05D005742 5.8e-107 391.7 382 54.5
CAN.G919.13 Capsicum annuum HOM05D004815 ORTHO05D005742 1.7e-106 390.2 370 54.3
HanXRQChr04g0121731 Helianthus annuus HOM05D004815 ORTHO05D005742 2.9e-106 389.4 338 60.1
BraA03t11735Z Brassica rapa HOM05D004815 ORTHO05D005742 3.8e-106 389.0 369 55.6
Nitab4.5_0001901g0030 Nicotiana tabacum HOM05D004815 ORTHO05D005742 5.4e-105 385.2 367 54.0
ClCG06G000170 Citrullus lanatus HOM05D004815 ORTHO05D005742 9.3e-105 384.4 370 53.2
Actinidia09581 Actinidia chinensis HOM05D004815 ORTHO05D005742 2.7e-104 382.9 321 60.1
Duzib138G1778 Durio zibethinus HOM05D004815 ORTHO05D005742 2.3e-103 379.8 349 55.9
Nitab4.5_0005459g0020 Nicotiana tabacum HOM05D004815 ORTHO05D005742 3.9e-103 379.0 391 51.9
C04p06610 Brassica napus HOM05D004815 ORTHO05D005742 5.1e-103 378.6 349 56.4
Phvul.010G089200 Phaseolus vulgaris HOM05D004815 ORTHO05D005742 6.6e-103 378.3 344 59.0
QL08p050919 Quercus lobata HOM05D004815 ORTHO05D005742 6.6e-103 378.3 346 58.4
Sopen01g037670 Solanum pennellii HOM05D004815 ORTHO05D005742 9.6e-102 374.4 321 60.4
FvH4_7g12840 Fragaria vesca HOM05D004815 ORTHO05D005742 1.3e-101 374.0 330 58.5
Nn1g01309 Nelumbo nucifera HOM05D004815 ORTHO05D005742 3.6e-101 372.5 324 60.2
Prupe.2G152800 Prunus persica HOM05D004815 ORTHO05D005742 6.2e-101 371.7 301 64.5
AUR62004281 Chenopodium quinoa HOM05D004815 ORTHO05D005742 1.2e-99 367.5 368 54.1
Peaxi162Scf00114g00211 Petunia axillaris HOM05D004815 ORTHO05D005742 1.2e-99 367.5 346 54.3
Ciclev10023945m.g Citrus clementina HOM05D004815 ORTHO05D005742 1.7e-98 363.6 354 55.4
Zm00001eb208530 Zea mays HOM05D004815 ORTHO05D005742 2.3e-95 353.2 379 49.6
HPP92_004960 Vanilla planifolia HOM05D004815 ORTHO05D005742 3.0e-95 352.8 379 48.5
THA.LOC104817269 Tarenaya hassleriana HOM05D004815 ORTHO05D005742 1.3e-93 347.4 332 54.8
Ah.15g094120 Amaranthus hybridus HOM05D001215 ORTHO05D001387 3.7e-93 345.9 359 53.8
MD02G1195700 Malus domestica HOM05D004815 ORTHO05D005742 4.8e-93 345.5 328 55.8
Nitab4.5_0001127g0010 Nicotiana tabacum HOM05D004815 ORTHO05D005742 1.1e-92 344.4 370 53.0
Lalb_Chr01g0021231 Lupinus albus HOM05D004815 ORTHO05D005742 2.4e-92 343.2 377 50.7
Sed0004795 Sechium edule HOM05D004815 ORTHO05D005742 1.1e-89 334.3 305 57.0
SEGI_15318 Sequoiadendron giganteum HOM05D004815 ORTHO05D005742 2.4e-84 316.6 372 46.2
Dinv43746 Davidia involucrata HOM05D004815 ORTHO05D005742 1.5e-78 297.4 278 57.2
Os02g0123200 Oryza sativa ssp. japonica HOM05D004815 ORTHO05D005742 1.5e-78 297.4 337 46.9
Mapoly0047s0037 Marchantia polymorpha HOM05D004815 ORTHO05D005742 6.3e-77 292.0 412 40.5
SHI13492 Sapria himalayana HOM05D004815 ORTHO05D005742 5.0e-74 282.3 464 39.0
CARHR140910 Cardamine hirsuta HOM05D004815 ORTHO05D005742 9.4e-73 278.1 288 52.4
Eucgr.D02393 Eucalyptus grandis HOM05D004815 ORTHO05D005742 1.8e-68 263.8 241 58.5
SMO147G0187 Selaginella moellendorffii HOM05D004815 ORTHO05D005742 1.2e-67 261.2 373 38.6
COL.COLO4_12639 Corchorus olitorius HOM05D004815 ORTHO05D005742 1.3e-66 257.7 216 59.3
AagrBONN_evm.TU.Sc2ySwM_228.5506 Anthoceros agrestis HOM05D004815 ORTHO05D005742 2.2e-66 256.9 371 39.6
CSS0047010 Camellia sinensis var. sinensis HOM05D004815 ORTHO05D005742 2.1e-64 250.4 271 52.4
CSS0023679 Camellia sinensis var. sinensis HOM05D004815 ORTHO05D005742 6.7e-63 245.4 285 49.8
Dinv32412 Davidia involucrata HOM05D004815 ORTHO05D005742 2.4e-60 236.9 259 51.4
PGSC0003DMG400007146 Solanum tuberosum HOM05D004815 ORTHO05D005742 2.0e-59 233.8 260 48.8
Eucgr.D02410 Eucalyptus grandis HOM05D004815 ORTHO05D005742 3.8e-58 229.6 239 53.6
CDE11G0368 Ceratophyllum demersum HOM05D004815 ORTHO05D005742 4.2e-57 226.1 197 57.9
ATR0757G223 Amborella trichopoda HOM05D004815 ORTHO05D005742 1.2e-56 224.6 230 52.2
Gohir.A11G084200 Gossypium hirsutum HOM05D004815 ORTHO05D005742 8.0e-56 221.9 240 50.4
Pp3c20_6130 Physcomitrium patens HOM05D004815 ORTHO05D005742 1.1e-52 211.5 329 37.1
AagrBONN_evm.TU.Sc2ySwM_369.172 Anthoceros agrestis HOM05D004815 ORTHO05D005742 8.5e-50 201.8 372 34.7
Eucgr.D02397 Eucalyptus grandis HOM05D004815 ORTHO05D005742 3.2e-49 199.9 215 52.1
CDE11G0585 Ceratophyllum demersum HOM05D004815 ORTHO05D005742 3.5e-43 179.9 137 61.3
FAN10G0991 Fragaria x ananassa HOM05D004815 ORTHO05D005742 1.3e-42 177.9 115 71.3
ATR0757G181 Amborella trichopoda HOM05D004815 ORTHO05D005742 5.0e-42 176.0 147 61.2
PRCOL_00005618 Prasinoderma coloniale HOM05D004815 ORTHO05D005742 2.7e-27 127.1 417 26.4
Glyma.04G148600 Glycine max HOM05D004815 ORTHO05D005742 3.6e-24 116.7 74 75.7
Aa31LG6G10720 Aethionema arabicum HOM05D004815 ORTHO05D005742 1.5e-22 111.3 143 46.9
CBR_g3181 Chara braunii HOM05D004815 ORTHO05D005742 2.9e-21 107.1 204 29.4
Aa31sc1021G10 Aethionema arabicum HOM05D004815 ORTHO05D005742 4.7e-16 89.7 120 41.7
COL.COLO4_24134 Corchorus olitorius HOM05D000638 ORTHO05D000801 2.0e-14 84.3 85 55.3
Lj3g0018651 Lotus japonicus HOM05D004815 ORTHO05D005742 2.9e-13 80.5 42 88.1
MBI11_g13051_MAGBIO Magnolia biondii HOM05D004815 ORTHO05D005742 7.8e-11 72.4 53 66.0
Hund16967 Selenicereus undatus HOM05D004815 ORTHO05D005742 2.8e-08 63.9 77 48.1
RcHm_v2.0_Chr1g0351871 Rosa chinensis HOM05D004815 ORTHO05D005742 1.1e-07 62.0 50 64.0
C07p07230 Brassica napus HOM05D004815 ORTHO05D005742 3.4e-06 57.0 57 49.1


User provided reference genes

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