Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold153G37000 Striga asiatica HOM05D005612 ORTHO05D007014 7.5e-141 503.8 252 100.0
Migut.B01623 Erythranthe guttata HOM05D005612 ORTHO05D007014 6.2e-95 351.3 222 78.8
MSTRG.17178 Avicennia marina HOM05D005612 ORTHO05D007014 1.1e-94 350.5 221 78.3
SalBow5G3218 Salvia bowleyana HOM05D005612 ORTHO05D007014 5.8e-93 344.7 222 77.0
Oeu055499.1 Olea europaea HOM05D005612 ORTHO05D007014 1.2e-85 320.5 226 73.9
CSS0047351 Camellia sinensis var. sinensis HOM05D005612 ORTHO05D007014 5.1e-81 305.1 226 67.7
Actinidia12252 Actinidia chinensis HOM05D005612 ORTHO05D007014 6.7e-81 304.7 226 66.8
GSVIVG01027677001 Vitis vinifera HOM05D005612 ORTHO05D007014 1.5e-80 303.5 226 69.0
QL08p052678 Quercus lobata HOM05D005612 ORTHO05D007014 1.9e-80 303.1 228 67.5
DCAR_008555 Daucus carota HOM05D005612 ORTHO05D007014 7.4e-80 301.2 226 66.8
vmacro13411 Vaccinium macrocarpon HOM05D005612 ORTHO05D007014 9.7e-80 300.8 226 66.8
Thecc.01G378200 Theobroma cacao HOM05D005612 ORTHO05D007014 1.6e-79 300.1 226 69.0
FAN26G0204 Fragaria x ananassa HOM05D005612 ORTHO05D007014 2.2e-79 299.7 226 67.3
unitig_749.g14376 Utricularia gibba HOM05D005612 ORTHO05D007014 6.3e-79 298.1 222 67.1
FAN28G2973 Fragaria x ananassa HOM05D005612 ORTHO05D007014 1.4e-78 297.0 223 67.3
COL.COLO4_12531 Corchorus olitorius HOM05D005612 ORTHO05D007014 2.4e-78 296.2 226 68.6
Prupe.6G155400 Prunus persica HOM05D005612 ORTHO05D007014 3.1e-78 295.8 226 69.0
TAR375G1134 Trochodendron aralioides HOM05D005612 ORTHO05D007014 3.1e-78 295.8 226 66.4
Cpa.g.sc18.108 Carica papaya HOM05D005612 ORTHO05D007014 4.1e-78 295.4 226 67.3
Dinv43696 Davidia involucrata HOM05D005612 ORTHO05D007014 5.3e-78 295.0 226 67.3
FAN23G2738 Fragaria x ananassa HOM05D005612 ORTHO05D007014 5.3e-78 295.0 223 66.8
FAN28G0581 Fragaria x ananassa HOM05D005612 ORTHO05D007014 6.9e-78 294.7 223 66.8
RcHm_v2.0_Chr3g0497141 Rosa chinensis HOM05D005612 ORTHO05D007014 1.2e-77 293.9 223 67.3
Duzib138G1608 Durio zibethinus HOM05D005612 ORTHO05D007014 2.6e-77 292.7 225 68.0
FvH4_1g28100 Fragaria vesca HOM05D005612 ORTHO05D007014 3.4e-77 292.4 223 66.8
Gohir.D08G156300 Gossypium hirsutum HOM05D005612 ORTHO05D007014 5.9e-77 291.6 226 66.4
Gorai.004G162600 Gossypium raimondii HOM05D005612 ORTHO05D007014 5.9e-77 291.6 226 66.4
Cc02_g24020 Coffea canephora HOM05D005612 ORTHO05D007014 1.7e-76 290.0 232 63.4
Nn4g26368 Nelumbo nucifera HOM05D005612 ORTHO05D007014 3.8e-76 288.9 226 65.0
Gohir.A08G135500 Gossypium hirsutum HOM05D005612 ORTHO05D007014 6.5e-76 288.1 226 65.5
CANSAT01G1400 Cannabis sativa HOM05D005612 ORTHO05D007014 8.5e-76 287.7 223 66.8
Hma1.2p1_2025F.1_g311480 Hydrangea macrophylla HOM05D005612 ORTHO05D007014 1.9e-75 286.6 226 65.0
Atru.chr2.2479 Acer truncatum HOM05D005612 ORTHO05D007014 5.5e-75 285.0 226 64.2
PSO339G2081 Papaver somniferum HOM05D005612 ORTHO05D007014 5.5e-75 285.0 220 65.9
TWI14G1300 Tripterygium wilfordii HOM05D005612 ORTHO05D007014 5.5e-75 285.0 229 64.2
Sopen08g002560 Solanum pennellii HOM05D005612 ORTHO05D007014 1.6e-74 283.5 224 64.3
CAN.G530.1 Capsicum annuum HOM05D005612 ORTHO05D007014 2.1e-74 283.1 226 62.4
Manes.05G046700 Manihot esculenta HOM05D005612 ORTHO05D007014 2.1e-74 283.1 226 66.8
PSO384G4101 Papaver somniferum HOM05D005612 ORTHO05D007014 2.1e-74 283.1 220 65.9
Potri.014G068500 Populus trichocarpa HOM05D005612 ORTHO05D007014 2.1e-74 283.1 222 66.7
Solyc08g006610.3 Solanum lycopersicum HOM05D005612 ORTHO05D007014 2.7e-74 282.7 224 63.8
Ciclev10010228m.g Citrus clementina HOM05D005612 ORTHO05D007014 6.1e-74 281.6 246 61.8
Hma1.2p1_0511F.1_g169190 Hydrangea macrophylla HOM05D005612 ORTHO05D007014 7.9e-74 281.2 226 64.2
Sabra14G0048200 Salix brachista HOM05D005612 ORTHO05D007014 7.9e-74 281.2 222 66.7
Eucgr.E01443 Eucalyptus grandis HOM05D005612 ORTHO05D007014 1.0e-73 280.8 225 64.9
Nitab4.5_0005450g0010 Nicotiana tabacum HOM05D005612 ORTHO05D007014 1.0e-73 280.8 229 62.9
PGSC0003DMG400026305 Solanum tuberosum HOM05D005612 ORTHO05D007014 1.4e-73 280.4 224 63.4
Sed0014004 Sechium edule HOM05D005612 ORTHO05D007014 1.8e-73 280.0 227 63.4
Aqoxy1G04104 Aquilegia oxysepala HOM05D005612 ORTHO05D007014 2.3e-73 279.6 226 62.4
Manes.01G266600 Manihot esculenta HOM05D005612 ORTHO05D007014 2.3e-73 279.6 226 65.0
CsaV3_3G009760 Cucumis sativus L. HOM05D005612 ORTHO05D007014 3.0e-73 279.3 227 63.4
Lalb_Chr03g0039601 Lupinus albus HOM05D005612 ORTHO05D007014 3.0e-73 279.3 224 63.8
Lsat_1_v5_gn_7_9741 Lactuca sativa HOM05D005612 ORTHO05D007014 3.9e-73 278.9 224 64.7
Medtr4g053430 Medicago truncatula HOM05D005612 ORTHO05D007014 3.9e-73 278.9 224 64.7
Nitab4.5_0000264g0010 Nicotiana tabacum HOM05D005612 ORTHO05D007014 3.9e-73 278.9 226 62.8
PGR042G0232 Punica granatum HOM05D005612 ORTHO05D007014 5.1e-73 278.5 222 67.6
Peaxi162Scf00045g01936 Petunia axillaris HOM05D005612 ORTHO05D007014 6.7e-73 278.1 226 64.2
Aqoxy3G02061 Aquilegia oxysepala HOM05D005612 ORTHO05D007014 8.8e-73 277.7 226 62.4
EL10Ac4g10240 Beta vulgaris HOM05D005612 ORTHO05D007014 8.8e-73 277.7 228 64.9
Cfa015219 Carpinus fangiana HOM05D005612 ORTHO05D007014 1.1e-72 277.3 226 64.6
Haze_16797 Corylus avellana HOM05D005612 ORTHO05D007014 1.1e-72 277.3 226 64.2
Lalb_Chr01g0021461 Lupinus albus HOM05D005612 ORTHO05D007014 3.3e-72 275.8 224 63.8
MELO3C006197.2 Cucumis melo HOM05D005612 ORTHO05D007014 7.4e-72 274.6 227 62.6
Lj3g0004128 Lotus japonicus HOM05D005612 ORTHO05D007014 1.7e-71 273.5 226 64.6
Ca_19396_v3 Cicer arietinum L. HOM05D005612 ORTHO05D007014 2.2e-71 273.1 223 62.3
Psat0s2995g0040 Pisum sativum HOM05D005612 ORTHO05D007014 2.2e-71 273.1 223 64.1
MD00G1094900 Malus domestica HOM05D005612 ORTHO05D007014 2.8e-71 272.7 227 63.9
Lsat_1_v5_gn_8_86120 Lactuca sativa HOM05D005612 ORTHO05D007014 4.8e-71 271.9 225 63.6
AUR62000130 Chenopodium quinoa HOM05D005612 ORTHO05D007014 6.3e-71 271.6 235 63.0
arahy.Tifrunner.gnm1.ann1.39QM8U Arachis hypogaea HOM05D005612 ORTHO05D007014 1.1e-70 270.8 224 63.8
Glyma.12G134000 Glycine max HOM05D005612 ORTHO05D007014 1.1e-70 270.8 229 63.3
CiPaw.01G263000 Carya illinoinensis HOM05D005612 ORTHO05D007014 1.8e-70 270.0 226 63.7
arahy.Tifrunner.gnm1.ann1.Q1YE57 Arachis hypogaea HOM05D005612 ORTHO05D007014 2.4e-70 269.6 224 63.8
TPR.G17234 Trifolium pratense HOM05D005612 ORTHO05D007014 4.1e-70 268.9 223 61.9
THA.LOC104827614 Tarenaya hassleriana HOM05D005612 ORTHO05D007014 9.1e-70 267.7 226 61.9
Glyma.06G270700 Glycine max HOM05D005612 ORTHO05D007014 1.2e-69 267.3 230 63.9
vmacro21020 Vaccinium macrocarpon HOM05D005612 ORTHO05D007014 1.2e-69 267.3 186 71.0
ECA236G2759 Erigeron canadensis HOM05D005612 ORTHO05D007014 2.6e-69 266.2 223 61.9
Sc16g0011470 Simmondsia chinensis HOM05D005612 ORTHO05D007014 5.9e-69 265.0 227 61.7
Carub.0004s2795 Capsella rubella HOM05D005612 ORTHO05D007014 7.7e-69 264.6 224 62.9
Phvul.011G138100 Phaseolus vulgaris HOM05D005612 ORTHO05D007014 7.7e-69 264.6 218 63.3
Hund07502 Selenicereus undatus HOM05D005612 ORTHO05D007014 8.5e-68 261.2 252 58.7
ClCG05G002330 Citrullus lanatus HOM05D005612 ORTHO05D007014 5.5e-67 258.5 242 57.4
AT2G45320 Arabidopsis thaliana HOM05D005612 ORTHO05D007014 2.1e-66 256.5 226 61.5
AL4G44420 Arabidopsis lyrata HOM05D005612 ORTHO05D007014 2.7e-66 256.1 224 61.2
Sp4g27340 Schrenkiella parvula HOM05D005612 ORTHO05D007014 4.7e-66 255.4 256 57.0
BraA03t11718Z Brassica rapa HOM05D005612 ORTHO05D007014 3.0e-65 252.7 227 60.8
Thhalv10001485m.g Eutrema salsugineum HOM05D005612 ORTHO05D007014 3.9e-65 252.3 224 62.1
C03p30020 Brassica napus HOM05D005612 ORTHO05D007014 5.1e-65 251.9 225 60.9
BcaB01g03271 Brassica carinata HOM05D005612 ORTHO05D007014 8.8e-65 251.1 226 60.2
CDE07G1659 Ceratophyllum demersum HOM05D005612 ORTHO05D007014 8.8e-65 251.1 256 53.1
A03p25180 Brassica napus HOM05D005612 ORTHO05D007014 2.0e-64 250.0 227 60.4
HanXRQChr04g0122751 Helianthus annuus HOM05D005612 ORTHO05D007014 2.0e-64 250.0 240 57.5
Dinv32369 Davidia involucrata HOM05D005612 ORTHO05D007014 3.7e-63 245.7 195 66.2
Ah.04g161950 Amaranthus hybridus HOM05D004275 ORTHO05D005720 5.3e-62 241.9 253 54.9
BcaC01g05140 Brassica carinata HOM05D005612 ORTHO05D007014 1.0e-60 237.7 228 58.3
BolC3t15349H Brassica oleracea HOM05D005612 ORTHO05D007014 1.0e-60 237.7 228 58.3
AUR62019310 Chenopodium quinoa HOM05D005612 ORTHO05D007014 3.8e-60 235.7 166 70.5
ATR0686G054 Amborella trichopoda HOM05D005612 ORTHO05D007014 2.1e-58 229.9 208 57.7
ATR1100G025 Amborella trichopoda HOM05D005612 ORTHO05D007014 1.0e-57 227.6 228 53.5
Zm00001eb195050 Zea mays HOM05D005612 ORTHO05D007014 1.0e-57 227.6 225 55.6
Lj7C530T5 Lonicera japonica HOM05D005612 ORTHO05D007014 2.8e-55 219.5 230 53.9
VMungo1127G0102 Vigna mungo HOM05D005612 ORTHO05D007014 2.6e-53 213.0 154 66.2
MBI14_g08144_MAGBIO Magnolia biondii HOM05D005612 ORTHO05D007014 5.5e-51 205.3 171 60.2
Medtr8g102045 Medicago truncatula HOM05D005612 ORTHO05D007014 1.1e-43 181.0 124 71.8
unitig_76.g29085 Utricularia gibba HOM05D005612 ORTHO05D007014 5.5e-43 178.7 195 50.3
CiPaw.09G176500 Carya illinoinensis HOM05D005612 ORTHO05D007014 2.1e-42 176.8 163 59.5
SMO119G0175 Selaginella moellendorffii HOM05D005612 ORTHO05D007014 1.0e-41 174.5 179 49.2
Zm00001eb012290 Zea mays HOM05D005612 ORTHO05D007014 2.4e-38 163.3 134 60.4
Zm00001eb385140 Zea mays HOM05D005612 ORTHO05D007014 9.1e-38 161.4 133 60.9
Zm00001eb084960 Zea mays HOM05D005612 ORTHO05D007014 1.0e-36 157.9 133 60.2
AagrBONN_evm.TU.Sc2ySwM_117.669 Anthoceros agrestis HOM05D005612 ORTHO05D007014 1.4e-33 147.5 160 48.8
CARHR140520 Cardamine hirsuta HOM05D005612 ORTHO05D007014 9.8e-32 141.4 104 67.3
Zm00001eb249030 Zea mays HOM05D005612 ORTHO05D007014 1.4e-30 137.5 108 63.0
Aa31LG1G26830 Aethionema arabicum HOM05D005612 ORTHO05D007014 2.4e-30 136.7 128 54.7
CARHR140530 Cardamine hirsuta HOM05D005612 ORTHO05D007014 3.3e-27 126.3 119 58.8
Zm00001eb321930 Zea mays HOM05D005612 ORTHO05D007014 9.2e-22 108.2 97 57.7
Haze_18350 Corylus avellana HOM05D005612 ORTHO05D007014 2.0e-21 107.1 72 70.8
Duzib138G0844 Durio zibethinus HOM05D005612 ORTHO05D007014 1.7e-20 104.0 66 75.8
Pp3c17_6010 Physcomitrium patens HOM05D005612 ORTHO05D007014 7.3e-19 98.6 118 44.1
SEGI_33395 Sequoiadendron giganteum HOM05D005612 ORTHO05D007014 4.4e-16 89.4 98 49.0
Gohir.A08G135200 Gossypium hirsutum HOM05D005612 ORTHO05D007014 1.1e-11 74.7 84 53.6
Gohir.A08G135550 Gossypium hirsutum HOM05D005612 ORTHO05D007014 1.1e-11 74.7 84 53.6
Rhsim01G0149000 Rhododendron simsii HOM05D005612 ORTHO05D007014 7.3e-11 72.0 54 63.0
Oeu011925.1 Olea europaea HOM05D005612 ORTHO05D007014 1.2e-10 71.2 155 31.6
Os06g0571300 Oryza sativa ssp. japonica HOM05D005612 ORTHO05D007014 7.6e-08 62.0 72 54.2
MBI14_g08143_MAGBIO Magnolia biondii HOM05D005612 ORTHO05D007014 2.4e-06 57.0 73 46.6


User provided reference genes

Program Settings