Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold153G36966 Striga asiatica HOM05D004705 ORTHO05D005595 0.0e+00 1469.5 754 100.0
MSTRG.20727 Avicennia marina HOM05D004705 ORTHO05D005595 3.0e-270 935.3 828 64.5
SalBow5G4930 Salvia bowleyana HOM05D004705 ORTHO05D005595 2.8e-247 859.0 736 64.5
Oeu051920.1 Olea europaea HOM05D004705 ORTHO05D005595 8.3e-244 847.4 834 59.7
Dinv38075 Davidia involucrata HOM05D004705 ORTHO05D005595 4.0e-238 828.6 802 59.0
Cc04_g03760 Coffea canephora HOM05D004705 ORTHO05D005595 5.8e-237 824.7 821 58.5
MSTRG.17159 Avicennia marina HOM05D004705 ORTHO05D005595 2.9e-236 822.4 823 58.4
vmacro16932 Vaccinium macrocarpon HOM05D004705 ORTHO05D005595 4.1e-235 818.5 806 58.7
CSS0001459 Camellia sinensis var. sinensis HOM05D004705 ORTHO05D005595 2.5e-232 809.3 777 60.1
CSS0020826 Camellia sinensis var. sinensis HOM05D004705 ORTHO05D005595 9.5e-232 807.4 777 59.8
PGSC0003DMG400005697 Solanum tuberosum HOM05D004705 ORTHO05D005595 9.5e-232 807.4 831 56.1
Solyc03g119940.3 Solanum lycopersicum HOM05D004705 ORTHO05D005595 3.4e-229 798.9 828 55.9
Sopen03g038820 Solanum pennellii HOM05D004705 ORTHO05D005595 7.5e-229 797.7 830 55.9
Oeu000022.1 Olea europaea HOM05D004705 ORTHO05D005595 8.3e-228 794.3 813 56.7
Peaxi162Scf00015g00532 Petunia axillaris HOM05D004705 ORTHO05D005595 2.3e-225 786.2 839 53.9
CAN.G438.96 Capsicum annuum HOM05D004705 ORTHO05D005595 5.2e-222 775.0 818 55.9
RhsimUnG0009400 Rhododendron simsii HOM05D004705 ORTHO05D005595 1.2e-221 773.9 856 54.3
Thecc.06G077700 Theobroma cacao HOM05D004705 ORTHO05D005595 2.6e-221 772.7 776 57.0
Ciclev10024977m.g Citrus clementina HOM05D004705 ORTHO05D005595 4.4e-221 771.9 772 56.9
Prupe.3G077300 Prunus persica HOM05D004705 ORTHO05D005595 7.5e-221 771.2 771 57.7
Nitab4.5_0004817g0040 Nicotiana tabacum HOM05D004705 ORTHO05D005595 8.3e-220 767.7 819 55.4
FvH4_6g30700 Fragaria vesca HOM05D004705 ORTHO05D005595 1.1e-219 767.3 783 56.1
Rhsim12G0195000 Rhododendron simsii HOM05D004705 ORTHO05D005595 1.4e-219 766.9 856 54.0
MD17G1201400 Malus domestica HOM05D004705 ORTHO05D005595 4.6e-218 761.9 788 56.3
FAN09G0848 Fragaria x ananassa HOM05D004705 ORTHO05D005595 1.7e-217 760.0 786 55.3
FAN02G3197 Fragaria x ananassa HOM05D004705 ORTHO05D005595 5.1e-217 758.4 783 55.6
Duzib235G0494 Durio zibethinus HOM05D004705 ORTHO05D005595 3.3e-216 755.7 765 56.2
Atru.chr1.3167 Acer truncatum HOM05D004705 ORTHO05D005595 5.6e-216 755.0 763 56.4
RcHm_v2.0_Chr2g0137071 Rosa chinensis HOM05D004705 ORTHO05D005595 7.3e-216 754.6 779 55.6
Haze_16487 Corylus avellana HOM05D004705 ORTHO05D005595 9.5e-216 754.2 772 56.9
HanXRQChr02g0032571 Helianthus annuus HOM05D004705 ORTHO05D005595 8.1e-215 751.1 784 54.5
FAN14G4493 Fragaria x ananassa HOM05D004705 ORTHO05D005595 1.8e-214 750.0 752 56.8
FAN05G0816 Fragaria x ananassa HOM05D004705 ORTHO05D005595 3.1e-214 749.2 781 54.8
Cfa002032 Carpinus fangiana HOM05D004705 ORTHO05D005595 5.2e-214 748.4 766 57.4
QL05p026953 Quercus lobata HOM05D004705 ORTHO05D005595 1.5e-213 746.9 772 56.1
ECA247G3649 Erigeron canadensis HOM05D004705 ORTHO05D005595 1.3e-212 743.8 820 52.7
Manes.04G119400 Manihot esculenta HOM05D004705 ORTHO05D005595 4.9e-212 741.9 772 56.3
Potri.003G058600 Populus trichocarpa HOM05D004705 ORTHO05D005595 3.2e-211 739.2 765 56.6
Duzib160G0698 Durio zibethinus HOM05D004705 ORTHO05D005595 5.4e-211 738.4 745 56.5
Gohir.A02G124100 Gossypium hirsutum HOM05D004705 ORTHO05D005595 7.1e-211 738.0 764 55.0
PGR031G3493 Punica granatum HOM05D004705 ORTHO05D005595 7.1e-211 738.0 766 55.9
ClCG07G012910 Citrullus lanatus HOM05D004705 ORTHO05D005595 9.2e-211 737.6 763 55.4
Lj5A66T57 Lonicera japonica HOM05D004705 ORTHO05D005595 1.2e-210 737.3 816 54.0
TAR626G1984 Trochodendron aralioides HOM05D004705 ORTHO05D005595 4.6e-210 735.3 782 55.4
MELO3C012944.2 Cucumis melo HOM05D004705 ORTHO05D005595 2.5e-208 729.6 771 54.9
CANSAT56G4120 Cannabis sativa HOM05D004705 ORTHO05D005595 6.2e-207 724.9 777 55.7
Sed0012410 Sechium edule HOM05D004705 ORTHO05D005595 1.1e-206 724.2 764 55.0
CsaV3_3G026670 Cucumis sativus L. HOM05D004705 ORTHO05D005595 2.4e-206 723.0 763 54.9
Gohir.D03G064900 Gossypium hirsutum HOM05D004705 ORTHO05D005595 2.4e-206 723.0 803 52.9
Glyma.15G011700 Glycine max HOM05D004705 ORTHO05D005595 6.9e-206 721.5 785 53.5
Gorai.002G057500 Gossypium raimondii HOM05D004705 ORTHO05D005595 1.5e-205 720.3 803 52.8
Dinv30551 Davidia involucrata HOM05D004705 ORTHO05D005595 2.0e-205 719.9 772 55.3
Lsat_1_v5_gn_1_33801 Lactuca sativa HOM05D004705 ORTHO05D005595 9.3e-203 711.1 795 53.0
DCAR_025463 Daucus carota HOM05D004705 ORTHO05D005595 1.3e-201 707.2 835 51.3
CiPaw.01G242500 Carya illinoinensis HOM05D004705 ORTHO05D005595 1.7e-201 706.8 762 54.2
Potri.001G175500 Populus trichocarpa HOM05D004705 ORTHO05D005595 3.0e-201 706.1 744 55.6
Migut.B01589 Erythranthe guttata HOM05D004705 ORTHO05D005595 4.3e-200 702.2 772 53.6
AUR62016408 Chenopodium quinoa HOM05D004705 ORTHO05D005595 2.1e-199 699.9 797 51.4
Phvul.005G173800 Phaseolus vulgaris HOM05D004705 ORTHO05D005595 3.6e-199 699.1 776 52.7
GSVIVG01017208001 Vitis vinifera HOM05D004705 ORTHO05D005595 4.0e-198 695.7 769 53.7
Lj3g0018532 Lotus japonicus HOM05D004705 ORTHO05D005595 1.5e-197 693.7 762 54.2
TWI75G0140 Tripterygium wilfordii HOM05D004705 ORTHO05D005595 2.0e-197 693.3 783 52.9
TAR383G1056 Trochodendron aralioides HOM05D004705 ORTHO05D005595 2.4e-195 686.4 779 52.6
EL10Ac9g21966 Beta vulgaris HOM05D004705 ORTHO05D005595 1.2e-194 684.1 797 51.1
Glyma.13G362100 Glycine max HOM05D004705 ORTHO05D005595 1.0e-193 681.0 771 52.1
Nn8g39334 Nelumbo nucifera HOM05D004705 ORTHO05D005595 3.9e-193 679.1 779 52.8
THA.LOC104818041 Tarenaya hassleriana HOM05D004705 ORTHO05D005595 1.1e-192 677.6 768 52.7
unitig_26.g8885 Utricularia gibba HOM05D004705 ORTHO05D005595 1.5e-192 677.2 636 58.8
Hund00574 Selenicereus undatus HOM05D004705 ORTHO05D005595 1.9e-192 676.8 772 52.6
Sp3g13840 Schrenkiella parvula HOM05D004705 ORTHO05D005595 1.3e-191 674.1 762 52.1
Aa31LG8G2800 Aethionema arabicum HOM05D004705 ORTHO05D005595 3.8e-188 662.5 761 52.6
Aqoxy7G01953 Aquilegia oxysepala HOM05D004705 ORTHO05D005595 6.4e-188 661.8 796 50.0
Medtr2g102680 Medicago truncatula HOM05D004705 ORTHO05D005595 1.4e-187 660.6 741 53.2
Ca_01096_v3 Cicer arietinum L. HOM05D004705 ORTHO05D005595 2.5e-187 659.8 723 53.5
VMungo1080G1183 Vigna mungo HOM05D004705 ORTHO05D005595 2.1e-186 656.8 767 51.2
Manes.11G049500 Manihot esculenta HOM05D004705 ORTHO05D005595 2.5e-184 649.8 628 58.1
TPR.G37249 Trifolium pratense HOM05D004705 ORTHO05D005595 1.8e-182 643.7 765 50.2
Lalb_Chr22g0351091 Lupinus albus HOM05D004705 ORTHO05D005595 3.1e-182 642.9 736 52.2
PSO170G5959 Papaver somniferum HOM05D004705 ORTHO05D005595 1.2e-181 641.0 769 50.5
PSO017G1026 Papaver somniferum HOM05D004705 ORTHO05D005595 1.5e-181 640.6 771 49.7
Carub.0003s1530 Capsella rubella HOM05D004705 ORTHO05D005595 3.4e-181 639.4 766 50.0
AUR62011594 Chenopodium quinoa HOM05D004705 ORTHO05D005595 3.4e-181 639.4 609 57.6
A05p33830 Brassica napus HOM05D004705 ORTHO05D005595 5.8e-181 638.6 763 51.0
Lalb_Chr24g0395661 Lupinus albus HOM05D004705 ORTHO05D005595 5.8e-181 638.6 641 56.2
AL3G28180 Arabidopsis lyrata HOM05D004705 ORTHO05D005595 1.3e-180 637.5 765 50.2
CARHR090640 Cardamine hirsuta HOM05D004705 ORTHO05D005595 1.7e-180 637.1 757 50.5
Eucgr.J03029 Eucalyptus grandis HOM05D004705 ORTHO05D005595 1.7e-180 637.1 749 51.8
C01p48810 Brassica napus HOM05D004705 ORTHO05D005595 3.8e-180 636.0 757 50.5
Thhalv10020202m.g Eutrema salsugineum HOM05D004705 ORTHO05D005595 7.1e-179 631.7 758 50.7
AT3G15550 Arabidopsis thaliana HOM05D004705 ORTHO05D005595 1.6e-178 630.6 773 49.4
MBI04_g43364_MAGBIO Magnolia biondii HOM05D004705 ORTHO05D005595 2.1e-178 630.2 854 46.6
BraA01t03898Z Brassica rapa HOM05D004705 ORTHO05D005595 1.3e-177 627.5 760 49.6
C05p51460 Brassica napus HOM05D004705 ORTHO05D005595 8.7e-177 624.8 762 50.3
BcaC05g28954 Brassica carinata HOM05D004705 ORTHO05D005595 4.3e-176 622.5 763 50.1
BolC1t04836H Brassica oleracea HOM05D004705 ORTHO05D005595 2.8e-175 619.8 757 49.4
A01p38480 Brassica napus HOM05D004705 ORTHO05D005595 4.8e-175 619.0 760 49.3
BcaC09g48528 Brassica carinata HOM05D004705 ORTHO05D005595 8.2e-175 618.2 757 49.3
arahy.Tifrunner.gnm1.ann1.1G4SNU Arachis hypogaea HOM05D004705 ORTHO05D005595 1.8e-174 617.1 770 49.2
BraA05t22205Z Brassica rapa HOM05D004705 ORTHO05D005595 1.8e-174 617.1 760 49.6
BcaB04g20914 Brassica carinata HOM05D004705 ORTHO05D005595 6.9e-174 615.1 759 49.8
Sc12g0008970 Simmondsia chinensis HOM05D004705 ORTHO05D005595 6.9e-174 615.1 797 49.1
BcaB06g29595 Brassica carinata HOM05D004705 ORTHO05D005595 9.0e-174 614.8 762 49.9
arahy.Tifrunner.gnm1.ann1.WXP04W Arachis hypogaea HOM05D004705 ORTHO05D005595 2.9e-172 609.8 758 50.3
Psat5g299960 Pisum sativum HOM05D004705 ORTHO05D005595 5.0e-172 609.0 582 58.6
Nitab4.5_0000410g0340 Nicotiana tabacum HOM05D004705 ORTHO05D005595 7.2e-171 605.1 434 71.0
BolC5t33833H Brassica oleracea HOM05D004705 ORTHO05D005595 1.7e-167 594.0 762 48.4
Sabra01G0137000 Salix brachista HOM05D004705 ORTHO05D005595 8.2e-167 591.7 729 49.4
COL.COLO4_12857 Corchorus olitorius HOM05D004705 ORTHO05D005595 1.3e-164 584.3 766 48.8
arahy.Tifrunner.gnm1.ann1.HFN88V Arachis hypogaea HOM05D004705 ORTHO05D005595 3.8e-164 582.8 723 50.6
Lalb_Chr25g0279551 Lupinus albus HOM05D004705 ORTHO05D005595 8.5e-164 581.6 715 50.6
Cpa.g.c32383.1 Carica papaya HOM05D004705 ORTHO05D005595 1.1e-163 581.3 712 51.5
CDE01G0719 Ceratophyllum demersum HOM05D004705 ORTHO05D005595 2.4e-150 537.0 751 45.8
Nn2g11880 Nelumbo nucifera HOM05D004705 ORTHO05D005595 7.0e-150 535.4 619 49.4
unitig_61.g26415 Utricularia gibba HOM05D004705 ORTHO05D005595 2.0e-149 533.9 481 61.5
arahy.Tifrunner.gnm1.ann1.AD4PBH Arachis hypogaea HOM05D004705 ORTHO05D005595 1.7e-148 530.8 723 47.9
Os01g0176500 Oryza sativa ssp. japonica HOM05D004705 ORTHO05D005595 1.2e-146 524.6 866 40.6
Zm00001eb122560 Zea mays HOM05D004705 ORTHO05D005595 9.7e-144 515.0 865 41.0
ATR0083G057 Amborella trichopoda HOM05D004705 ORTHO05D005595 1.8e-142 510.8 840 40.5
THA.LOC104812485 Tarenaya hassleriana HOM05D004705 ORTHO05D005595 4.7e-130 469.5 439 57.2
Ah.01g021140 Amaranthus hybridus HOM05D004705 ORTHO05D005595 1.2e-128 464.9 778 41.1
SEGI_27484 Sequoiadendron giganteum HOM05D004705 ORTHO05D005595 3.1e-113 413.7 743 39.2
SEGI_13982 Sequoiadendron giganteum HOM05D004705 ORTHO05D005595 4.4e-96 356.7 612 39.1
AagrBONN_evm.TU.Sc2ySwM_228.3613 Anthoceros agrestis HOM05D004705 ORTHO05D005595 1.2e-88 332.0 512 41.0
MBI01_g15493_MAGBIO Magnolia biondii HOM05D004705 ORTHO05D005595 2.9e-87 327.4 733 34.5
Pp3c13_19170 Physcomitrium patens HOM05D004705 ORTHO05D005595 3.8e-87 327.0 488 41.2
Actinidia16007 Actinidia chinensis HOM05D004705 ORTHO05D005595 1.3e-84 318.5 299 57.5
Pp3c8_15560 Physcomitrium patens HOM05D004705 ORTHO05D005595 5.6e-83 313.2 545 38.0
Pp3c23_18290 Physcomitrium patens HOM05D004705 ORTHO05D005595 7.6e-80 302.8 430 40.5
Pp3c23_2990 Physcomitrium patens HOM05D004705 ORTHO05D005595 7.6e-80 302.8 577 34.7
CDE02G1329 Ceratophyllum demersum HOM05D004705 ORTHO05D005595 1.4e-78 298.5 498 39.4
Pp3c20_1400 Physcomitrium patens HOM05D004705 ORTHO05D005595 3.5e-77 293.9 484 37.8
Pp3c20_1403 Physcomitrium patens HOM05D004705 ORTHO05D005595 3.5e-77 293.9 484 37.8
Pp3c8_22450 Physcomitrium patens HOM05D004705 ORTHO05D005595 3.3e-75 287.3 483 37.1
Pp3c24_17130 Physcomitrium patens HOM05D004705 ORTHO05D005595 1.7e-71 275.0 475 38.1
MBI04_g47892_MAGBIO Magnolia biondii HOM05D004705 ORTHO05D005595 1.1e-65 255.8 536 41.2
Lj8C335T16 Lonicera japonica HOM05D004705 ORTHO05D005595 8.4e-63 246.1 384 46.1
SHI09686 Sapria himalayana HOM05D004705 ORTHO05D005595 2.2e-55 221.5 632 32.9
SMO147G0411 Selaginella moellendorffii HOM05D004705 ORTHO05D005595 1.4e-54 218.8 192 54.7
Actinidia08822 Actinidia chinensis HOM05D004705 ORTHO05D005595 1.4e-46 192.2 201 56.7
Actinidia16006 Actinidia chinensis HOM05D004705 ORTHO05D005595 4.0e-36 157.5 397 35.5
Nitab4.5_0000410g0350 Nicotiana tabacum HOM05D004705 ORTHO05D005595 1.4e-28 132.5 380 31.3
BcaC09g48527 Brassica carinata HOM05D004705 ORTHO05D005595 4.8e-26 124.0 92 57.6
Medtr1g107505 Medicago truncatula HOM05D004705 ORTHO05D005595 2.0e-16 92.0 71 62.0
GSVIVG01017207001 Vitis vinifera HOM05D029100 ORTHO05D016439 2.9e-15 88.2 76 53.9
MBI04_g47893_MAGBIO Magnolia biondii HOM05D004705 ORTHO05D005595 3.8e-15 87.8 205 30.2
unitig_26.g8886 Utricularia gibba HOM05D004705 ORTHO05D005595 2.8e-13 81.6 83 53.0
unitig_61.g26414 Utricularia gibba HOM05D000584 ORTHO05D000458 5.7e-11 73.9 144 38.9
FAN21G1601 Fragaria x ananassa HOM05D000031 ORTHO05D000030 1.4e-09 69.3 53 54.7
FAN08G3635 Fragaria x ananassa HOM05D004705 ORTHO05D000113 1.2e-08 66.2 53 52.8
FAN15G3749 Fragaria x ananassa HOM05D005026 ORTHO05D005981 1.2e-08 66.2 53 52.8
Cpa.g.c42332 Carica papaya HOM05D004705 ORTHO05D005595 1.0e-07 63.2 53 50.9
FAN07G2703 Fragaria x ananassa HOM05D004705 ORTHO05D005595 6.6e-07 60.5 53 49.1
Medtr1g041460 Medicago truncatula HOM05D004705 ORTHO05D005595 6.6e-07 60.5 49 59.2


User provided reference genes

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