Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold153G36948 Striga asiatica HOM05D004832 ORTHO05D005821 4.2e-113 411.4 210 100.0
SGA_v2.0_scaffold52G19196 Striga asiatica HOM05D004832 ORTHO05D005821 2.0e-83 312.8 169 94.1
MSTRG.17149 Avicennia marina HOM05D004832 ORTHO05D005821 6.4e-77 291.2 169 86.4
Migut.B01571 Erythranthe guttata HOM05D004832 ORTHO05D005821 1.0e-74 283.9 163 87.1
Oeu061515.1 Olea europaea HOM05D004832 ORTHO05D005821 6.6e-74 281.2 169 82.2
Cc02_g24530 Coffea canephora HOM05D004832 ORTHO05D005821 1.2e-70 270.4 169 78.7
CsaV3_3G007460 Cucumis sativus L. HOM05D001289 ORTHO05D002298 5.4e-68 261.5 173 74.0
CSS0038442 Camellia sinensis var. sinensis HOM05D004832 ORTHO05D005821 1.2e-67 260.4 166 78.3
GSVIVG01018202001 Vitis vinifera HOM05D004832 ORTHO05D005821 1.2e-67 260.4 162 79.6
Lj9A562G31 Lonicera japonica HOM05D004832 ORTHO05D005821 4.6e-67 258.5 167 76.0
Atru.chr5.207 Acer truncatum HOM05D004832 ORTHO05D005821 6.0e-67 258.1 169 76.9
ECA234G0521 Erigeron canadensis HOM05D004832 ORTHO05D005821 6.0e-67 258.1 164 77.4
CAN.G899.18 Capsicum annuum HOM05D004832 ORTHO05D005821 1.3e-66 256.9 171 73.7
HanXRQChr16g0519281 Helianthus annuus HOM05D004832 ORTHO05D005821 3.9e-66 255.4 164 76.2
Peaxi162Scf00377g00611 Petunia axillaris HOM05D004832 ORTHO05D005821 1.9e-65 253.1 169 75.7
Ciclev10022588m.g Citrus clementina HOM05D004832 ORTHO05D005821 2.5e-65 252.7 166 77.7
Manes.01G270800 Manihot esculenta HOM05D004832 ORTHO05D005821 2.5e-65 252.7 166 75.9
ClCG05G000300 Citrullus lanatus HOM05D004832 ORTHO05D005821 3.3e-65 252.3 166 74.7
MELO3C005967.2 Cucumis melo HOM05D004832 ORTHO05D005821 4.3e-65 251.9 166 75.3
Nitab4.5_0001823g0010 Nicotiana tabacum HOM05D004832 ORTHO05D005821 1.2e-64 250.4 169 73.4
Sc08g0005120 Simmondsia chinensis HOM05D004832 ORTHO05D005821 1.6e-64 250.0 166 74.7
Thecc.01G386800 Theobroma cacao HOM05D004832 ORTHO05D005821 1.6e-64 250.0 164 76.8
Nitab4.5_0000706g0140 Nicotiana tabacum HOM05D004832 ORTHO05D005821 4.7e-64 248.4 163 74.8
Dinv43651 Davidia involucrata HOM05D004832 ORTHO05D005821 6.2e-64 248.1 166 74.7
arahy.Tifrunner.gnm1.ann1.A6AVFI Arachis hypogaea HOM05D004832 ORTHO05D005821 8.1e-64 247.7 172 74.4
DCAR_029781 Daucus carota HOM05D004832 ORTHO05D005821 8.1e-64 247.7 166 73.5
CiPaw.13G030400 Carya illinoinensis HOM05D004832 ORTHO05D005821 1.4e-63 246.9 166 75.3
COL.COLO4_11958 Corchorus olitorius HOM05D004832 ORTHO05D005821 1.4e-63 246.9 164 76.8
Sopen01g036450 Solanum pennellii HOM05D004832 ORTHO05D005821 1.4e-63 246.9 165 73.3
COL.COLO4_12459 Corchorus olitorius HOM05D004832 ORTHO05D005821 1.8e-63 246.5 164 76.2
arahy.Tifrunner.gnm1.ann1.YIL91U Arachis hypogaea HOM05D004832 ORTHO05D005821 2.4e-63 246.1 169 75.7
arahy.Tifrunner.gnm1.ann1.W023QS Arachis hypogaea HOM05D004832 ORTHO05D005821 3.1e-63 245.7 166 76.5
Gohir.A11G077700 Gossypium hirsutum HOM05D004832 ORTHO05D005821 4.0e-63 245.4 164 75.0
Solyc01g090720.3 Solanum lycopersicum HOM05D004832 ORTHO05D005821 4.0e-63 245.4 163 73.0
Aqoxy7G02831 Aquilegia oxysepala HOM05D004832 ORTHO05D005821 5.2e-63 245.0 166 74.7
Gohir.D11G082100 Gossypium hirsutum HOM05D004832 ORTHO05D005821 5.2e-63 245.0 164 75.0
Gorai.007G087800 Gossypium raimondii HOM05D004832 ORTHO05D005821 5.2e-63 245.0 164 75.0
arahy.Tifrunner.gnm1.ann1.32ME5N Arachis hypogaea HOM05D004832 ORTHO05D005821 6.8e-63 244.6 166 75.3
arahy.Tifrunner.gnm1.ann1.88IY7S Arachis hypogaea HOM05D004832 ORTHO05D005821 6.8e-63 244.6 166 75.3
Glyma.16G097600 Glycine max HOM05D004832 ORTHO05D005821 6.8e-63 244.6 166 74.7
Eucgr.D02506 Eucalyptus grandis HOM05D004832 ORTHO05D005821 8.9e-63 244.2 172 70.9
Lj3g0007809 Lotus japonicus HOM05D004832 ORTHO05D005821 8.9e-63 244.2 166 74.7
Phvul.010G055900 Phaseolus vulgaris HOM05D004832 ORTHO05D005821 8.9e-63 244.2 166 74.7
Hma1.2p1_0341F.1_g130370 Hydrangea macrophylla HOM05D004832 ORTHO05D005821 1.2e-62 243.8 168 72.6
MBI04_g11708_MAGBIO Magnolia biondii HOM05D004832 ORTHO05D005821 3.4e-62 242.3 165 74.5
HanXRQChr05g0138431 Helianthus annuus HOM05D004832 ORTHO05D005821 7.6e-62 241.1 164 72.6
Sed0016485 Sechium edule HOM05D004832 ORTHO05D005821 7.6e-62 241.1 166 72.3
vmacro00550 Vaccinium macrocarpon HOM05D004832 ORTHO05D005821 7.6e-62 241.1 192 67.2
Sabra02G0110600 Salix brachista HOM05D004832 ORTHO05D005821 1.7e-61 240.0 168 70.2
Lsat_1_v5_gn_4_43780 Lactuca sativa HOM05D004832 ORTHO05D005821 2.2e-61 239.6 160 73.8
PSO063G5716 Papaver somniferum HOM05D004832 ORTHO05D005821 3.8e-61 238.8 166 71.1
Medtr4g093680 Medicago truncatula HOM05D004832 ORTHO05D005821 6.4e-61 238.0 166 74.1
Nn6g33924 Nelumbo nucifera HOM05D004832 ORTHO05D005821 6.4e-61 238.0 153 78.4
PSO017G2958 Papaver somniferum HOM05D004832 ORTHO05D005821 1.9e-60 236.5 166 70.5
Psat2g165520 Pisum sativum HOM05D004832 ORTHO05D005821 2.4e-60 236.1 163 73.6
Rhsim07G0033000 Rhododendron simsii HOM05D004832 ORTHO05D005821 2.4e-60 236.1 203 63.1
Prupe.2G134800 Prunus persica HOM05D004832 ORTHO05D005821 3.2e-60 235.7 162 72.2
FvH4_7g10630 Fragaria vesca HOM05D004832 ORTHO05D005821 4.2e-60 235.3 166 71.1
FAN06G0284 Fragaria x ananassa HOM05D004832 ORTHO05D005821 4.2e-60 235.3 166 71.1
FAN06G1644 Fragaria x ananassa HOM05D004832 ORTHO05D005821 4.2e-60 235.3 166 71.1
Potri.002G142000 Populus trichocarpa HOM05D004832 ORTHO05D005821 4.2e-60 235.3 168 69.0
RcHm_v2.0_Chr1g0348571 Rosa chinensis HOM05D004832 ORTHO05D005821 4.2e-60 235.3 166 71.1
Potri.002G142100 Populus trichocarpa HOM05D004832 ORTHO05D005821 7.1e-60 234.6 168 68.5
FAN01G1609 Fragaria x ananassa HOM05D004832 ORTHO05D005821 9.3e-60 234.2 166 71.1
arahy.Tifrunner.gnm1.ann1.84RPTF Arachis hypogaea HOM05D005553 ORTHO05D006866 1.2e-59 233.8 160 76.2
MD07G1111400 Malus domestica HOM05D004832 ORTHO05D005821 1.6e-59 233.4 166 70.5
Lalb_Chr07g0195651 Lupinus albus HOM05D004832 ORTHO05D005821 2.1e-59 233.0 166 72.3
Cfa011129 Carpinus fangiana HOM05D004832 ORTHO05D005821 3.5e-59 232.3 164 70.1
MD10G1232800 Malus domestica HOM05D004832 ORTHO05D005821 3.5e-59 232.3 166 69.9
Ca_18388_v3 Cicer arietinum L. HOM05D004832 ORTHO05D005821 4.6e-59 231.9 166 72.3
CANSAT64G0775 Cannabis sativa HOM05D004832 ORTHO05D005821 1.0e-58 230.7 166 69.3
Hund06868 Selenicereus undatus HOM05D004832 ORTHO05D005821 3.3e-57 225.7 164 68.3
ATR0317G035 Amborella trichopoda HOM05D004832 ORTHO05D005821 1.6e-56 223.4 159 69.8
Lj5g0022701 Lotus japonicus HOM05D004832 ORTHO05D005821 2.1e-56 223.0 167 67.7
TPR.G2894 Trifolium pratense HOM05D004832 ORTHO05D005821 4.8e-56 221.9 162 71.0
Glyma.07G109700 Glycine max HOM05D004832 ORTHO05D005821 8.1e-56 221.1 149 75.8
Haze_02734 Corylus avellana HOM05D004832 ORTHO05D005821 3.1e-55 219.2 186 61.8
HPP92_023799 Vanilla planifolia HOM05D004832 ORTHO05D005821 2.6e-54 216.1 166 64.5
FAN03G2909 Fragaria x ananassa HOM05D004832 ORTHO05D005821 5.8e-54 214.9 190 60.0
Zm00001eb272690 Zea mays HOM05D004832 ORTHO05D005821 1.7e-53 213.4 166 60.8
Duzib138G0601 Durio zibethinus HOM05D004832 ORTHO05D005821 1.9e-52 209.9 137 76.6
VMungo0331G1454 Vigna mungo HOM05D004832 ORTHO05D005821 6.0e-51 204.9 139 74.8
AUR62024291 Chenopodium quinoa HOM05D004832 ORTHO05D005821 7.8e-51 204.5 190 56.8
SEGI_17839 Sequoiadendron giganteum HOM05D004832 ORTHO05D005821 2.3e-50 203.0 161 64.0
Carub.0003s1502 Capsella rubella HOM05D004832 ORTHO05D005821 1.5e-49 200.3 162 62.3
Carub.0008s1260 Capsella rubella HOM05D004832 ORTHO05D005821 2.5e-49 199.5 183 56.3
AL5G21320 Arabidopsis lyrata HOM05D004832 ORTHO05D005821 4.3e-49 198.7 159 62.9
Ah.03g133100 Amaranthus hybridus HOM05D004832 ORTHO05D005821 2.1e-48 196.4 137 68.6
PGR119G1038 Punica granatum HOM05D004832 ORTHO05D005821 3.6e-48 195.7 164 62.2
Aa31LG8G2560 Aethionema arabicum HOM05D004832 ORTHO05D005821 1.1e-47 194.1 172 57.0
MBI03_g13774_MAGBIO Magnolia biondii HOM05D004832 ORTHO05D005821 1.4e-47 193.7 175 60.6
AL3G27790 Arabidopsis lyrata HOM05D004832 ORTHO05D005821 1.8e-47 193.4 158 61.4
CDE06G2810 Ceratophyllum demersum HOM05D004832 ORTHO05D005821 9.0e-47 191.0 136 67.6
C01p49120 Brassica napus HOM05D004832 ORTHO05D005821 7.6e-46 188.0 153 58.8
BolC1t04876H Brassica oleracea HOM05D004832 ORTHO05D005821 7.6e-46 188.0 153 58.8
THA.LOC104813152 Tarenaya hassleriana HOM05D004832 ORTHO05D005821 7.6e-46 188.0 139 68.3
A01p38670 Brassica napus HOM05D004832 ORTHO05D005821 9.9e-46 187.6 153 58.2
BraA01t03917Z Brassica rapa HOM05D004832 ORTHO05D005821 9.9e-46 187.6 153 58.2
Thhalv10021656m.g Eutrema salsugineum HOM05D004832 ORTHO05D005821 3.8e-45 185.7 164 54.9
Thhalv10023724m.g Eutrema salsugineum HOM05D004832 ORTHO05D005821 3.8e-45 185.7 164 54.9
BcaB07g33539 Brassica carinata HOM05D004832 ORTHO05D005821 4.9e-45 185.3 156 56.4
Os07g0485600 Oryza sativa ssp. japonica HOM05D004832 ORTHO05D005821 6.4e-45 184.9 126 69.0
QL04p035586 Quercus lobata HOM05D004832 ORTHO05D005821 2.4e-44 183.0 116 77.6
AT3G15351 Arabidopsis thaliana HOM05D004832 ORTHO05D005821 4.2e-44 182.2 136 66.2
DCAR_022632 Daucus carota HOM05D004832 ORTHO05D005821 4.2e-44 182.2 118 74.6
TAR629G1420 Trochodendron aralioides HOM05D004832 ORTHO05D005821 4.2e-44 182.2 122 73.8
BcaC09g48497 Brassica carinata HOM05D004832 ORTHO05D005821 5.4e-44 181.8 149 59.1
CSS0042819 Camellia sinensis var. sinensis HOM05D004832 ORTHO05D005821 7.1e-44 181.4 117 76.1
Thhalv10009904m.g Eutrema salsugineum HOM05D004832 ORTHO05D005821 7.1e-44 181.4 169 52.1
Thhalv10009807m.g Eutrema salsugineum HOM05D004832 ORTHO05D005821 1.2e-43 180.6 164 54.3
Glyma.02G101600 Glycine max HOM05D004832 ORTHO05D005821 1.6e-43 180.3 127 73.2
BcaC01g05853 Brassica carinata HOM05D004832 ORTHO05D005821 2.1e-43 179.9 153 55.6
AUR62035275 Chenopodium quinoa HOM05D004832 ORTHO05D005821 3.5e-43 179.1 128 68.0
Sp7g07030 Schrenkiella parvula HOM05D004832 ORTHO05D005821 1.1e-41 174.1 159 52.8
C03p21760 Brassica napus HOM05D004832 ORTHO05D005821 2.5e-41 172.9 140 57.9
arahy.Tifrunner.gnm1.ann1.W1G7Z9 Arachis hypogaea HOM05D004832 ORTHO05D005821 2.8e-40 169.5 116 74.1
Psat5g158760 Pisum sativum HOM05D004832 ORTHO05D005821 4.8e-40 168.7 137 64.2
QL04p020302 Quercus lobata HOM05D004832 ORTHO05D005821 6.2e-40 168.3 116 71.6
QL04p046167 Quercus lobata HOM05D004832 ORTHO05D005821 1.1e-39 167.5 116 74.1
Mapoly0002s0300 Marchantia polymorpha HOM05D004832 ORTHO05D005821 3.9e-34 149.1 163 47.2
Thhalv10009921m.g Eutrema salsugineum HOM05D004832 ORTHO05D005821 8.7e-34 147.9 156 51.3
Pp3c10_24560 Physcomitrium patens HOM05D004832 ORTHO05D005821 9.6e-33 144.4 160 48.8
SEGI_40532 Sequoiadendron giganteum HOM05D004832 ORTHO05D005821 9.6e-33 144.4 116 62.1
HanXRQChr13g0390291 Helianthus annuus HOM05D004832 ORTHO05D005821 5.8e-30 135.2 129 55.0
BcaB04g20935 Brassica carinata HOM05D002732 ORTHO05D006371 1.3e-29 134.0 138 53.6
QL04p046254 Quercus lobata HOM05D003594 ORTHO05D004268 1.3e-29 134.0 88 77.3
AagrBONN_evm.TU.Sc2ySwM_368.2344 Anthoceros agrestis HOM05D004832 ORTHO05D005821 1.7e-29 133.7 163 42.3
AUR62005450 Chenopodium quinoa HOM05D004832 ORTHO05D005821 1.7e-29 133.7 125 58.4
Psat6g056000 Pisum sativum HOM05D004832 ORTHO05D005821 3.2e-28 129.4 119 60.5
HPP92_023759 Vanilla planifolia HOM05D004832 ORTHO05D005821 7.1e-28 128.3 138 50.7
Atru.chr5.209 Acer truncatum HOM05D004832 ORTHO05D005821 1.3e-26 124.0 75 78.7
SMO141G0160 Selaginella moellendorffii HOM05D004832 ORTHO05D005821 5.1e-26 122.1 143 46.9
Sp1g41650 Schrenkiella parvula HOM05D004832 ORTHO05D005821 3.7e-24 115.9 118 49.2
Glyma.03G117400 Glycine max HOM05D004832 ORTHO05D005821 3.1e-23 112.8 70 77.1
Potri.014G057550 Populus trichocarpa HOM05D004832 ORTHO05D005821 4.1e-23 112.5 163 44.8
EL10Ac6g13797 Beta vulgaris HOM05D004832 ORTHO05D005821 5.9e-22 108.6 84 65.5
Thhalv10002901m.g Eutrema salsugineum HOM05D004832 ORTHO05D005821 1.4e-20 104.0 161 40.4
HPP92_023760 Vanilla planifolia HOM05D004832 ORTHO05D005821 3.2e-20 102.8 95 51.6
BcaC08g43270 Brassica carinata HOM05D004832 ORTHO05D005821 2.7e-19 99.8 74 62.2
C06p06180 Brassica napus HOM05D004832 ORTHO05D005821 2.7e-19 99.8 74 62.2
BolC6t35729H Brassica oleracea HOM05D004832 ORTHO05D005821 2.7e-19 99.8 74 62.2
Oeu063212.2 Olea europaea HOM05D004832 ORTHO05D005821 1.8e-18 97.1 163 41.1
Thhalv10009561m.g Eutrema salsugineum HOM05D004832 ORTHO05D005821 3.9e-18 95.9 94 53.2
CARHR215320 Cardamine hirsuta HOM05D004832 ORTHO05D005821 1.4e-15 87.4 71 59.2
QL12p027350 Quercus lobata HOM05D004832 ORTHO05D005821 1.5e-14 84.0 52 73.1
Sabra14G0041800 Salix brachista HOM05D004832 ORTHO05D005821 5.0e-13 79.0 69 62.3
Atru.chr5.208 Acer truncatum HOM05D004832 ORTHO05D005821 6.5e-13 78.6 54 74.1
Atru.chr5.565 Acer truncatum HOM05D004832 ORTHO05D005821 8.5e-13 78.2 49 77.6
Atru.chr5.584 Acer truncatum HOM05D004832 ORTHO05D005821 8.5e-13 78.2 49 77.6
arahy.Tifrunner.gnm1.ann1.T8JHIW Arachis hypogaea HOM05D004832 ORTHO05D005821 1.9e-12 77.0 63 63.5
CARHR090340 Cardamine hirsuta HOM05D004832 ORTHO05D005821 2.5e-12 76.6 75 56.0
Os06g0535333 Oryza sativa ssp. japonica HOM05D004832 ORTHO05D005821 6.1e-11 72.0 59 61.0
vmacro13464 Vaccinium macrocarpon HOM05D004832 ORTHO05D005821 1.5e-09 67.4 48 68.8
Nn1g00967 Nelumbo nucifera HOM05D004832 ORTHO05D005821 5.3e-07 58.9 58 48.3
vmacro05238 Vaccinium macrocarpon HOM05D004832 ORTHO05D005821 9.1e-07 58.2 43 69.8


User provided reference genes

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