Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold153G36924 Striga asiatica HOM05D010740 ORTHO05D000022 1.1e-181 639.8 321 100.0
SGA_v2.0_scaffold147G36377 Striga asiatica HOM05D000003 ORTHO05D000022 6.4e-28 129.0 171 39.8
Psat7g156400 Pisum sativum HOM05D000003 ORTHO05D017882 3.6e-15 86.7 152 33.6
AT5G42905 Arabidopsis thaliana HOM05D000003 ORTHO05D000022 5.8e-13 79.3 182 30.8
Thecc.10G084500 Theobroma cacao HOM05D000003 ORTHO05D011148 2.2e-12 77.4 139 31.7
COL.COLO4_07368 Corchorus olitorius HOM05D000003 ORTHO05D000022 2.9e-12 77.0 151 30.5
CARHR098760 Cardamine hirsuta HOM05D000003 ORTHO05D000022 3.8e-12 76.6 174 28.7
CARHR124520 Cardamine hirsuta HOM05D000003 ORTHO05D000022 4.9e-12 76.3 145 31.7
Cpa.g.sc12.71 Carica papaya HOM05D010740 ORTHO05D010953 4.2e-11 73.2 152 30.3
PGR031G0166 Punica granatum HOM05D000155 ORTHO05D000022 4.2e-11 73.2 193 28.0
Lj3g0015119 Lotus japonicus HOM05D000003 ORTHO05D000022 5.4e-11 72.8 183 25.7
Cpa.g.sc1.70 Carica papaya HOM05D010740 ORTHO05D010953 2.7e-10 70.5 152 27.0
QL04p014896 Quercus lobata HOM05D000003 ORTHO05D000022 7.9e-10 68.9 170 27.1
Lj6g0017573 Lotus japonicus HOM05D000003 ORTHO05D000004 2.3e-09 67.4 70 47.1
Thecc.06G025800 Theobroma cacao HOM05D000003 ORTHO05D000022 2.3e-09 67.4 183 25.7
Thecc.06G023800 Theobroma cacao HOM05D000003 ORTHO05D000006 3.0e-09 67.0 183 25.7
SGA_v2.0_scaffold6G03284 Striga asiatica HOM05D000050 ORTHO05D009008 8.7e-09 65.5 40 82.5
Manes.04G057464 Manihot esculenta HOM05D000003 ORTHO05D000022 1.1e-08 65.1 143 29.4
Manes.07G103102 Manihot esculenta HOM05D000003 ORTHO05D000004 1.5e-08 64.7 180 27.8
AUR62030044 Chenopodium quinoa HOM05D017440 ORTHO05D000022 1.9e-08 64.3 152 27.6
COL.COLO4_03949 Corchorus olitorius HOM05D000155 ORTHO05D000022 1.9e-08 64.3 205 29.8
RcHm_v2.0_Chr4g0406871 Rosa chinensis HOM05D000003 ORTHO05D000004 2.5e-08 63.9 190 23.7
CARHR145030 Cardamine hirsuta HOM05D000003 ORTHO05D000022 3.3e-08 63.5 191 24.1
Lj4g0003656 Lotus japonicus HOM05D000003 ORTHO05D000007 4.3e-08 63.2 121 29.8
COL.COLO4_14116 Corchorus olitorius HOM05D000003 ORTHO05D000004 7.4e-08 62.4 133 27.1
Psat7g047000 Pisum sativum HOM05D000003 ORTHO05D000022 7.4e-08 62.4 164 25.0
QL01p007248 Quercus lobata HOM05D000003 ORTHO05D000022 1.6e-07 61.2 179 22.3
Atru.chr2.1419 Acer truncatum HOM05D000003 ORTHO05D000022 2.8e-07 60.5 178 27.5
Thecc.01G193900 Theobroma cacao HOM05D015157 ORTHO05D011148 4.8e-07 59.7 47 46.8
Atru.chr10.394 Acer truncatum HOM05D000003 ORTHO05D000022 6.2e-07 59.3 165 27.9
FAN17G0469 Fragaria x ananassa HOM05D000003 ORTHO05D020649 6.2e-07 59.3 161 25.5
Manes.06G020101 Manihot esculenta HOM05D000003 ORTHO05D000004 6.2e-07 59.3 257 23.7
COL.COLO4_03980 Corchorus olitorius HOM05D000155 ORTHO05D000022 8.1e-07 58.9 193 29.5
COL.COLO4_08472 Corchorus olitorius HOM05D000003 ORTHO05D000022 8.1e-07 58.9 139 28.1
Psat4g029800 Pisum sativum HOM05D000003 ORTHO05D000004 8.1e-07 58.9 53 47.2
QL08p061842 Quercus lobata HOM05D000003 ORTHO05D000004 1.4e-06 58.2 183 25.1
PGR119G2417 Punica granatum HOM05D000003 ORTHO05D000004 1.8e-06 57.8 197 24.4
Duzib235G0850 Durio zibethinus HOM05D000003 ORTHO05D000167 2.4e-06 57.4 142 30.3
SGA_v2.0_scaffold232G43526 Striga asiatica HOM05D015157 ORTHO05D011148 3.1e-06 57.0 75 36.0
Cpa.g.sc81.77 Carica papaya HOM05D015157 ORTHO05D011148 6.9e-06 55.8 67 31.3
AUR62033970 Chenopodium quinoa HOM05D000003 ORTHO05D000004 6.9e-06 55.8 70 42.9
Atru.chr1.1336 Acer truncatum HOM05D000003 ORTHO05D000022 9.0e-06 55.5 187 26.7
Atru.chr4.1178 Acer truncatum HOM05D000003 ORTHO05D000022 9.0e-06 55.5 132 26.5
THA.LOC104799794 Tarenaya hassleriana HOM05D000003 ORTHO05D000004 9.0e-06 55.5 83 41.0


User provided reference genes

Program Settings