Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold152G36841 Striga asiatica HOM05D001677 ORTHO05D001682 1.2e-83 313.2 162 100.0
SGA_v2.0_scaffold23G10109 Striga asiatica HOM05D001677 ORTHO05D001682 1.8e-23 113.2 55 98.2
SGA_v2.0_scaffold49G18321 Striga asiatica HOM05D001677 ORTHO05D001682 4.7e-19 98.6 55 83.6
Oeu042468.2 Olea europaea HOM05D001677 ORTHO05D001682 4.8e-16 88.6 55 76.4
CAN.G758.15 Capsicum annuum HOM05D001677 ORTHO05D001682 2.7e-11 72.8 55 63.6
Potri.015G102700 Populus trichocarpa HOM05D001677 ORTHO05D001682 3.6e-11 72.4 54 63.0
Nn3g16347 Nelumbo nucifera HOM05D001677 ORTHO05D001682 8.0e-11 71.2 54 63.0
Potri.015G102200 Populus trichocarpa HOM05D001677 ORTHO05D001682 8.0e-11 71.2 54 61.1
Potri.015G103100 Populus trichocarpa HOM05D001677 ORTHO05D001682 8.0e-11 71.2 54 61.1
Sabra15G0122400 Salix brachista HOM05D001677 ORTHO05D001682 1.0e-10 70.9 54 63.0
Lj5C792G1 Lonicera japonica HOM05D001677 ORTHO05D001682 1.4e-10 70.5 54 61.1
PGR044G1715 Punica granatum HOM05D001677 ORTHO05D001682 1.4e-10 70.5 55 60.0
Nn1g06301 Nelumbo nucifera HOM05D001677 ORTHO05D001682 1.8e-10 70.1 56 57.1
Solyc03g097670.4 Solanum lycopersicum HOM05D001677 ORTHO05D001682 1.8e-10 70.1 54 61.1
Sopen03g028420 Solanum pennellii HOM05D001677 ORTHO05D001682 1.8e-10 70.1 54 61.1
Lj5C789T2 Lonicera japonica HOM05D001677 ORTHO05D001682 3.0e-10 69.3 54 59.3
Lj5C825G4 Lonicera japonica HOM05D001677 ORTHO05D001682 3.0e-10 69.3 54 59.3
RcHm_v2.0_Chr7g0189191 Rosa chinensis HOM05D001677 ORTHO05D001682 3.0e-10 69.3 56 55.4
FvH4_5g09020 Fragaria vesca HOM05D001677 ORTHO05D001682 4.0e-10 68.9 55 56.4
FAN04G3180 Fragaria x ananassa HOM05D001677 ORTHO05D001682 4.0e-10 68.9 55 56.4
FAN08G0140 Fragaria x ananassa HOM05D001677 ORTHO05D001682 4.0e-10 68.9 55 56.4
FAN13G0435 Fragaria x ananassa HOM05D001677 ORTHO05D001682 4.0e-10 68.9 55 56.4
FAN18G3131 Fragaria x ananassa HOM05D001677 ORTHO05D001682 4.0e-10 68.9 55 56.4
AL5G28270 Arabidopsis lyrata HOM05D001677 ORTHO05D001682 6.8e-10 68.2 55 56.4
Cfa018735 Carpinus fangiana HOM05D001677 ORTHO05D001682 6.8e-10 68.2 55 58.2
Sabra12G0076200 Salix brachista HOM05D001677 ORTHO05D001682 6.8e-10 68.2 54 61.1
Actinidia08892 Actinidia chinensis HOM05D001677 ORTHO05D001682 8.8e-10 67.8 55 60.0
BcaC06g34372 Brassica carinata HOM05D001677 ORTHO05D001682 8.8e-10 67.8 55 56.4
A06p45880 Brassica napus HOM05D001677 ORTHO05D001682 8.8e-10 67.8 55 56.4
C07p29760 Brassica napus HOM05D001677 ORTHO05D001682 8.8e-10 67.8 55 56.4
BraA06t27455Z Brassica rapa HOM05D001677 ORTHO05D001682 8.8e-10 67.8 55 56.4
Prupe.5G145600 Prunus persica HOM05D001677 ORTHO05D001682 8.8e-10 67.8 55 58.2
RcHm_v2.0_Chr7g0189261 Rosa chinensis HOM05D001677 ORTHO05D001682 8.8e-10 67.8 56 55.4
Carub.0005s1494 Capsella rubella HOM05D001677 ORTHO05D001682 1.2e-09 67.4 55 54.5
Peaxi162Scf00516g00002 Petunia axillaris HOM05D001677 ORTHO05D001682 1.2e-09 67.4 54 59.3
Peaxi162Scf00516g00021 Petunia axillaris HOM05D001677 ORTHO05D001682 1.2e-09 67.4 54 59.3
TWI23G0548 Tripterygium wilfordii HOM05D001677 ORTHO05D001682 1.2e-09 67.4 55 58.2
Haze_07697 Corylus avellana HOM05D001677 ORTHO05D001682 1.5e-09 67.0 55 54.5
Thhalv10010053m.g Eutrema salsugineum HOM05D001677 ORTHO05D001682 1.5e-09 67.0 55 54.5
Haze_07699 Corylus avellana HOM05D001677 ORTHO05D001682 2.0e-09 66.6 55 54.5
Potri.015G103000 Populus trichocarpa HOM05D001677 ORTHO05D001682 2.0e-09 66.6 54 55.6
A06p18920 Brassica napus HOM05D001677 ORTHO05D001682 2.6e-09 66.2 55 54.5
BraA06t24974Z Brassica rapa HOM05D001677 ORTHO05D001682 2.6e-09 66.2 55 54.5
Cfa018739 Carpinus fangiana HOM05D001677 ORTHO05D001682 3.4e-09 65.9 55 54.5
DCAR_026240 Daucus carota HOM05D001677 ORTHO05D001682 3.4e-09 65.9 54 61.1
vmacro07666 Vaccinium macrocarpon HOM05D001677 ORTHO05D001682 3.4e-09 65.9 55 61.8
Cfa018734 Carpinus fangiana HOM05D001677 ORTHO05D001682 4.4e-09 65.5 55 54.5
Haze_07129 Corylus avellana HOM05D001677 ORTHO05D001682 4.4e-09 65.5 55 56.4
DCAR_026243 Daucus carota HOM05D001677 ORTHO05D001682 4.4e-09 65.5 54 61.1
DCAR_026252 Daucus carota HOM05D001677 ORTHO05D001682 4.4e-09 65.5 54 59.3
GSVIVG01008603001 Vitis vinifera HOM05D001677 ORTHO05D001682 4.4e-09 65.5 54 51.9
DCAR_026249 Daucus carota HOM05D001677 ORTHO05D001682 5.7e-09 65.1 54 59.3
Dinv11210 Davidia involucrata HOM05D001677 ORTHO05D001682 5.7e-09 65.1 54 55.6
ECA246G3205 Erigeron canadensis HOM05D001677 ORTHO05D001682 5.7e-09 65.1 54 59.3
Potri.012G103700 Populus trichocarpa HOM05D001677 ORTHO05D001682 5.7e-09 65.1 54 57.4
QL10p001595 Quercus lobata HOM05D001677 ORTHO05D001682 5.7e-09 65.1 55 56.4
Rhsim12G0178100 Rhododendron simsii HOM05D001677 ORTHO05D001682 5.7e-09 65.1 55 54.5
THA.LOC104821528 Tarenaya hassleriana HOM05D001677 ORTHO05D001682 5.7e-09 65.1 55 52.7
Aqoxy388s003 Aquilegia oxysepala HOM05D001677 ORTHO05D001682 7.5e-09 64.7 54 53.7
Aqoxy5G03233_Aqoxy5G03234 Aquilegia oxysepala HOM05D001677 ORTHO05D001682 7.5e-09 64.7 54 53.7
CSS0035392 Camellia sinensis var. sinensis HOM05D001677 ORTHO05D001682 7.5e-09 64.7 55 52.7
Cfa018737 Carpinus fangiana HOM05D001677 ORTHO05D001682 7.5e-09 64.7 55 54.5
Cfa018738 Carpinus fangiana HOM05D001677 ORTHO05D001682 7.5e-09 64.7 54 51.9
CiPaw.12G002200 Carya illinoinensis HOM05D001677 ORTHO05D001682 7.5e-09 64.7 57 52.6
Haze_07128 Corylus avellana HOM05D001677 ORTHO05D001682 7.5e-09 64.7 86 44.2
vmacro07667 Vaccinium macrocarpon HOM05D001677 ORTHO05D001682 7.5e-09 64.7 55 60.0
vmacro19152 Vaccinium macrocarpon HOM05D001677 ORTHO05D001682 7.5e-09 64.7 55 56.4
Atru.chr5.2723 Acer truncatum HOM05D001677 ORTHO05D001682 9.8e-09 64.3 55 52.7
Actinidia25541 Actinidia chinensis HOM05D001677 ORTHO05D001682 9.8e-09 64.3 54 51.9
Aa31LG4G17320 Aethionema arabicum HOM05D001677 ORTHO05D001682 9.8e-09 64.3 54 51.9
BcaC06g31467 Brassica carinata HOM05D001677 ORTHO05D001682 9.8e-09 64.3 55 52.7
Ciclev10030485m.g Citrus clementina HOM05D001677 ORTHO05D001682 9.8e-09 64.3 55 56.4
MD06G1134600 Malus domestica HOM05D001677 ORTHO05D001682 9.8e-09 64.3 55 52.7
MD06G1135500 Malus domestica HOM05D001677 ORTHO05D001682 9.8e-09 64.3 55 52.7
CSS0014974 Camellia sinensis var. sinensis HOM05D001677 ORTHO05D001682 1.3e-08 63.9 55 52.7
Cfa018740 Carpinus fangiana HOM05D001677 ORTHO05D001682 1.3e-08 63.9 55 52.7
CiPaw.16G063700 Carya illinoinensis HOM05D001677 ORTHO05D001682 1.3e-08 63.9 55 54.5
Manes.14G047228 Manihot esculenta HOM05D001677 ORTHO05D001682 1.3e-08 63.9 85 38.8
Manes.14G047284 Manihot esculenta HOM05D001677 ORTHO05D001682 1.3e-08 63.9 85 38.8
Nitab4.5_0001464g0090 Nicotiana tabacum HOM05D001677 ORTHO05D001682 1.3e-08 63.9 54 57.4
Prupe.5G145400 Prunus persica HOM05D001677 ORTHO05D001682 1.3e-08 63.9 55 54.5
Ciclev10030486m.g Citrus clementina HOM05D001677 ORTHO05D001682 1.7e-08 63.5 57 57.9
Ciclev10030487m.g Citrus clementina HOM05D001677 ORTHO05D001682 1.7e-08 63.5 55 50.9
Rhsim08G0194500 Rhododendron simsii HOM05D001677 ORTHO05D001682 1.7e-08 63.5 55 52.7
Aqoxy31s001 Aquilegia oxysepala HOM05D001677 ORTHO05D001682 2.2e-08 63.2 54 51.9
C08p23800 Brassica napus HOM05D001677 ORTHO05D001682 2.2e-08 63.2 55 52.7
BolC8t50006H Brassica oleracea HOM05D001677 ORTHO05D001682 2.2e-08 63.2 55 52.7
CSS0023392 Camellia sinensis var. sinensis HOM05D001677 ORTHO05D001682 2.2e-08 63.2 55 50.9
CiPaw.16G063600 Carya illinoinensis HOM05D001677 ORTHO05D001682 2.2e-08 63.2 55 54.5
vmacro16735 Vaccinium macrocarpon HOM05D001677 ORTHO05D001682 2.2e-08 63.2 55 52.7
Ciclev10033797m.g Citrus clementina HOM05D001677 ORTHO05D001682 2.8e-08 62.8 55 49.1
Cc04_g09790 Coffea canephora HOM05D001677 ORTHO05D001682 2.8e-08 62.8 54 59.3
Dinv23192 Davidia involucrata HOM05D001677 ORTHO05D001682 2.8e-08 62.8 54 55.6
Prupe.5G145900 Prunus persica HOM05D001677 ORTHO05D001682 2.8e-08 62.8 55 50.9
QL10p001641 Quercus lobata HOM05D001677 ORTHO05D001682 2.8e-08 62.8 55 54.5
Atru.chr6.1884 Acer truncatum HOM05D001677 ORTHO05D001682 3.7e-08 62.4 55 50.9
AT3G48770 Arabidopsis thaliana HOM05D001677 ORTHO05D001682 3.7e-08 62.4 55 50.9
CSS0011249 Camellia sinensis var. sinensis HOM05D001677 ORTHO05D001682 3.7e-08 62.4 55 50.9
CANSAT80G2052 Cannabis sativa HOM05D001677 ORTHO05D001682 3.7e-08 62.4 55 50.9
HanXRQChr05g0157711 Helianthus annuus HOM05D001677 ORTHO05D001682 3.7e-08 62.4 54 59.3
MD06G1135200 Malus domestica HOM05D001677 ORTHO05D001682 3.7e-08 62.4 55 50.9
Sabra15G0122500 Salix brachista HOM05D001677 ORTHO05D001682 3.7e-08 62.4 86 39.5
CiPaw.11G003000 Carya illinoinensis HOM05D001677 ORTHO05D001682 4.9e-08 62.0 55 52.7
CiPaw.12G002400 Carya illinoinensis HOM05D001677 ORTHO05D001682 4.9e-08 62.0 55 54.5
MELO3C026178.2 Cucumis melo HOM05D001677 ORTHO05D001682 4.9e-08 62.0 54 53.7
EL10Ac5g11343 Beta vulgaris HOM05D001677 ORTHO05D001682 6.3e-08 61.6 55 49.1
Sp2g11380 Schrenkiella parvula HOM05D001677 ORTHO05D001682 6.3e-08 61.6 55 49.1
Aqoxy5G03227 Aquilegia oxysepala HOM05D001677 ORTHO05D001682 8.3e-08 61.2 54 51.9
Aqoxy5G03231 Aquilegia oxysepala HOM05D001677 ORTHO05D001682 8.3e-08 61.2 54 50.0
CSS0007435 Camellia sinensis var. sinensis HOM05D001677 ORTHO05D001682 8.3e-08 61.2 55 49.1
Cpa.g.sc4.136 Carica papaya HOM05D001677 ORTHO05D001682 8.3e-08 61.2 55 54.5
Sed0008346 Sechium edule HOM05D001677 ORTHO05D001682 8.3e-08 61.2 54 51.9
vmacro16736 Vaccinium macrocarpon HOM05D001677 ORTHO05D001682 8.3e-08 61.2 55 50.9
CSS0017785 Camellia sinensis var. sinensis HOM05D001677 ORTHO05D001682 1.1e-07 60.8 55 49.1
CARHR157530 Cardamine hirsuta HOM05D001677 ORTHO05D001682 1.1e-07 60.8 56 53.6
MD06G1135400 Malus domestica HOM05D001677 ORTHO05D001682 1.1e-07 60.8 55 54.5
CsaV3_1G000240 Cucumis sativus L. HOM05D001677 ORTHO05D001682 1.4e-07 60.5 54 51.9
Gorai.007G044000 Gossypium raimondii HOM05D001677 ORTHO05D001682 1.4e-07 60.5 55 49.1
HanXRQChr05g0157671 Helianthus annuus HOM05D001677 ORTHO05D001682 1.4e-07 60.5 54 57.4
Lalb_Chr09g0328741 Lupinus albus HOM05D001677 ORTHO05D001682 1.4e-07 60.5 55 49.1
PSO017G6869 Papaver somniferum HOM05D001677 ORTHO05D001682 1.4e-07 60.5 54 51.9
Sed0021934 Sechium edule HOM05D001677 ORTHO05D001682 1.4e-07 60.5 54 53.7
CSS0042921 Camellia sinensis var. sinensis HOM05D001677 ORTHO05D001682 1.8e-07 60.1 55 47.3
AUR62034811 Chenopodium quinoa HOM05D001677 ORTHO05D001682 1.8e-07 60.1 54 50.0
Atru.chr2.541 Acer truncatum HOM05D001677 ORTHO05D001682 2.4e-07 59.7 55 49.1
PSO339G2156 Papaver somniferum HOM05D001677 ORTHO05D001682 2.4e-07 59.7 54 50.0
Sabra12G0076300 Salix brachista HOM05D001677 ORTHO05D001682 2.4e-07 59.7 54 55.6
CiPaw.16G062900 Carya illinoinensis HOM05D001677 ORTHO05D001682 3.1e-07 59.3 56 53.6
CiPaw.16G063400 Carya illinoinensis HOM05D001677 ORTHO05D001682 3.1e-07 59.3 55 52.7
Gohir.D11G040900 Gossypium hirsutum HOM05D001677 ORTHO05D001682 3.1e-07 59.3 55 49.1
Medtr8g011210 Medicago truncatula HOM05D001677 ORTHO05D001682 4.1e-07 58.9 55 49.1
QL10p001355 Quercus lobata HOM05D001677 ORTHO05D001682 4.1e-07 58.9 55 47.3
AUR62034808 Chenopodium quinoa HOM05D001677 ORTHO05D001682 5.4e-07 58.5 54 48.1
QL05p049365 Quercus lobata HOM05D001677 ORTHO05D001682 5.4e-07 58.5 55 49.1
AUR62029541 Chenopodium quinoa HOM05D001677 ORTHO05D001682 7.0e-07 58.2 54 48.1
Lsat_1_v5_gn_5_10340 Lactuca sativa HOM05D001677 ORTHO05D001682 7.0e-07 58.2 54 50.0
PSO675G5911 Papaver somniferum HOM05D001677 ORTHO05D001682 7.0e-07 58.2 54 46.3
Thecc.03G136300 Theobroma cacao HOM05D001677 ORTHO05D001682 7.0e-07 58.2 55 50.9
CSS0009577 Camellia sinensis var. sinensis HOM05D001677 ORTHO05D001682 9.2e-07 57.8 55 47.3
Duzib084G0945 Durio zibethinus HOM05D001677 ORTHO05D001682 1.2e-06 57.4 55 49.1
Os11g0514100 Oryza sativa ssp. japonica HOM05D001677 ORTHO05D001682 2.0e-06 56.6 54 53.7
TPR.G28991 Trifolium pratense HOM05D001677 ORTHO05D001682 2.0e-06 56.6 55 49.1
Ah.11g047240 Amaranthus hybridus HOM05D001677 ORTHO05D001682 2.7e-06 56.2 54 46.3
COL.COLO4_16669 Corchorus olitorius HOM05D001677 ORTHO05D001682 2.7e-06 56.2 54 48.1
Lj5g0011496 Lotus japonicus HOM05D001677 ORTHO05D001682 2.7e-06 56.2 55 49.1
Lj5g0014641 Lotus japonicus HOM05D001677 ORTHO05D001682 2.7e-06 56.2 55 49.1
Lalb_Chr16g0384991 Lupinus albus HOM05D001677 ORTHO05D001682 2.7e-06 56.2 55 45.5
ATR0582G005 Amborella trichopoda HOM05D001677 ORTHO05D001682 3.5e-06 55.8 55 47.3
Haze_07127 Corylus avellana HOM05D001677 ORTHO05D001682 3.5e-06 55.8 55 52.7
Glyma.03G091100 Glycine max HOM05D001677 ORTHO05D001682 3.5e-06 55.8 55 49.1
TPR.G10117 Trifolium pratense HOM05D001677 ORTHO05D001682 3.5e-06 55.8 55 47.3
MBI11_g34374_MAGBIO Magnolia biondii HOM05D001677 ORTHO05D001682 4.5e-06 55.5 54 50.0
Medtr8g011200 Medicago truncatula HOM05D001677 ORTHO05D001682 4.5e-06 55.5 55 49.1
Os11g0514000 Oryza sativa ssp. japonica HOM05D001677 ORTHO05D001682 4.5e-06 55.5 54 48.1
QL10p001689 Quercus lobata HOM05D001677 ORTHO05D001682 4.5e-06 55.5 55 47.3
Hund10085 Selenicereus undatus HOM05D001677 ORTHO05D001682 4.5e-06 55.5 54 46.3
Lj1g0023217 Lotus japonicus HOM05D001677 ORTHO05D001682 5.9e-06 55.1 55 47.3
Lj5g0013644 Lotus japonicus HOM05D001677 ORTHO05D001682 5.9e-06 55.1 55 47.3
Sed0024009 Sechium edule HOM05D001677 ORTHO05D001682 5.9e-06 55.1 54 46.3
Duzib205G1638 Durio zibethinus HOM05D001677 ORTHO05D001682 7.7e-06 54.7 55 47.3
Gohir.A11G037600 Gossypium hirsutum HOM05D001677 ORTHO05D001682 7.7e-06 54.7 55 45.5
Phvul.010G031800 Phaseolus vulgaris HOM05D001677 ORTHO05D001682 7.7e-06 54.7 55 47.3
Sc22g0003590 Simmondsia chinensis HOM05D001677 ORTHO05D001682 7.7e-06 54.7 54 44.4


User provided reference genes

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