Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold152G36807 Striga asiatica HOM05D005715 ORTHO05D007160 4.4e-158 561.2 279 100.0
SGA_v2.0_scaffold28G11837 Striga asiatica HOM05D005715 ORTHO05D007160 4.9e-93 345.1 302 63.6
MSTRG.22219 Avicennia marina HOM05D005715 ORTHO05D007160 1.3e-77 293.9 334 52.7
MSTRG.24379 Avicennia marina HOM05D005715 ORTHO05D007160 2.0e-70 270.0 337 51.0
Oeu053093.1 Olea europaea HOM05D005715 ORTHO05D007160 8.0e-59 231.5 332 45.5
Oeu053625.1 Olea europaea HOM05D005715 ORTHO05D007160 1.1e-55 221.1 329 44.7
CAN.G724.34 Capsicum annuum HOM05D005715 ORTHO05D007160 7.2e-52 208.4 329 42.2
Solyc04g077740.1 Solanum lycopersicum HOM05D005715 ORTHO05D007160 8.0e-51 204.9 332 41.6
PGSC0003DMG400010622 Solanum tuberosum HOM05D005715 ORTHO05D007160 1.4e-50 204.1 334 41.3
Sopen04g031360 Solanum pennellii HOM05D005715 ORTHO05D007160 1.8e-50 203.8 332 41.3
Nitab4.5_0000497g0110 Nicotiana tabacum HOM05D005715 ORTHO05D007160 2.3e-50 203.4 329 40.4
Peaxi162Scf00081g00232 Petunia axillaris HOM05D005715 ORTHO05D007160 6.8e-50 201.8 323 40.9
Manes.18G047200 Manihot esculenta HOM05D005715 ORTHO05D007160 9.8e-49 198.0 333 41.4
Rhsim06G0062800 Rhododendron simsii HOM05D005715 ORTHO05D007160 2.8e-48 196.4 322 43.2
Nitab4.5_0003725g0050 Nicotiana tabacum HOM05D005715 ORTHO05D007160 1.1e-47 194.5 331 39.6
Ciclev10001560m.g Citrus clementina HOM05D005715 ORTHO05D007160 1.8e-47 193.7 343 40.8
Thecc.08G087700 Theobroma cacao HOM05D005715 ORTHO05D007160 2.4e-47 193.4 338 41.4
Sc02g0007950 Simmondsia chinensis HOM05D005715 ORTHO05D007160 5.4e-47 192.2 312 44.6
Cpa.g.sc142.38 Carica papaya HOM05D005715 ORTHO05D007160 9.1e-47 191.4 333 39.9
Duzib093G0740 Durio zibethinus HOM05D005715 ORTHO05D007160 1.6e-46 190.7 337 42.1
PGR031G1686 Punica granatum HOM05D005715 ORTHO05D007160 2.0e-46 190.3 361 38.5
QL05p065482 Quercus lobata HOM05D005715 ORTHO05D007160 4.5e-46 189.1 338 40.5
QL12p038205 Quercus lobata HOM05D005715 ORTHO05D007160 4.5e-46 189.1 338 40.5
Sabra02G0092400 Salix brachista HOM05D005715 ORTHO05D007160 1.0e-45 188.0 338 38.8
Gohir.D05G214000 Gossypium hirsutum HOM05D005715 ORTHO05D007160 2.3e-45 186.8 311 43.7
FAN20G0332 Fragaria x ananassa HOM05D005715 ORTHO05D007160 2.9e-45 186.4 337 41.8
FAN15G0086 Fragaria x ananassa HOM05D005715 ORTHO05D007160 3.8e-45 186.0 344 41.3
FvH4_2g32940 Fragaria vesca HOM05D005715 ORTHO05D007160 5.0e-45 185.7 343 41.1
CANSAT25G3138 Cannabis sativa HOM05D005715 ORTHO05D007160 8.6e-45 184.9 344 37.2
COL.COLO4_28493 Corchorus olitorius HOM05D005715 ORTHO05D007160 8.6e-45 184.9 352 38.6
Dinv44948 Davidia involucrata HOM05D005715 ORTHO05D007160 8.6e-45 184.9 338 39.3
MD08G1080800 Malus domestica HOM05D005715 ORTHO05D007160 8.6e-45 184.9 341 40.8
Dinv39217 Davidia involucrata HOM05D005715 ORTHO05D007160 1.1e-44 184.5 309 42.1
FAN24G0894 Fragaria x ananassa HOM05D005715 ORTHO05D007160 1.1e-44 184.5 342 40.9
RcHm_v2.0_Chr6g0309781 Rosa chinensis HOM05D005715 ORTHO05D007160 1.5e-44 184.1 339 39.8
Cfa013768 Carpinus fangiana HOM05D005715 ORTHO05D007160 1.9e-44 183.7 304 41.8
Eucgr.F02242 Eucalyptus grandis HOM05D005715 ORTHO05D007160 2.5e-44 183.3 344 39.0
Glyma.14G089033 Glycine max HOM05D005715 ORTHO05D007160 2.5e-44 183.3 337 38.6
Gohir.A05G210700 Gossypium hirsutum HOM05D005715 ORTHO05D007160 2.5e-44 183.3 337 40.9
FAN27G0384 Fragaria x ananassa HOM05D005715 ORTHO05D007160 3.2e-44 183.0 345 41.2
CiPaw.08G050600 Carya illinoinensis HOM05D005715 ORTHO05D007160 4.2e-44 182.6 342 41.8
Prupe.1G421700 Prunus persica HOM05D005715 ORTHO05D007160 4.2e-44 182.6 350 38.6
Gorai.009G220700 Gossypium raimondii HOM05D005715 ORTHO05D007160 5.5e-44 182.2 336 41.4
Haze_22425 Corylus avellana HOM05D005715 ORTHO05D007160 9.5e-44 181.4 314 41.7
Potri.014G015300 Populus trichocarpa HOM05D005715 ORTHO05D007160 1.6e-43 180.6 332 37.0
TWI12G0318 Tripterygium wilfordii HOM05D005715 ORTHO05D007160 1.6e-43 180.6 333 36.9
CSS0034937 Camellia sinensis var. sinensis HOM05D005715 ORTHO05D007160 2.1e-43 180.3 347 39.2
CSS0039747 Camellia sinensis var. sinensis HOM05D005715 ORTHO05D007160 2.1e-43 180.3 347 39.2
Medtr1g017920 Medicago truncatula HOM05D005715 ORTHO05D007160 2.8e-43 179.9 340 38.8
Potri.002G117700 Populus trichocarpa HOM05D005715 ORTHO05D007160 4.7e-43 179.1 336 37.2
Lalb_Chr22g0355691 Lupinus albus HOM05D005715 ORTHO05D007160 8.0e-43 178.3 336 40.2
Phvul.001G028500 Phaseolus vulgaris HOM05D005715 ORTHO05D007160 1.4e-42 177.6 337 38.0
Lj4C71T16 Lonicera japonica HOM05D005715 ORTHO05D007160 1.8e-42 177.2 324 38.9
Ah.05g167050 Amaranthus hybridus HOM05D005715 ORTHO05D007160 5.2e-42 175.6 328 39.3
TWI56G0918 Tripterygium wilfordii HOM05D005715 ORTHO05D007160 5.2e-42 175.6 339 38.6
SalBow2G0154 Salvia bowleyana HOM05D005715 ORTHO05D007160 6.8e-42 175.3 192 53.1
Glyma.17G234300 Glycine max HOM05D005715 ORTHO05D007160 8.8e-42 174.9 335 39.1
ClCG05G020660 Citrullus lanatus HOM05D005715 ORTHO05D007160 1.5e-41 174.1 328 37.5
Gorai.010G026200 Gossypium raimondii HOM05D005715 ORTHO05D007160 1.7e-40 170.6 303 38.6
Lj5g0027881 Lotus japonicus HOM05D005715 ORTHO05D007160 3.7e-40 169.5 336 37.5
MELO3C016824.2 Cucumis melo HOM05D005715 ORTHO05D007160 4.9e-40 169.1 331 37.5
unitig_744.g24126 Utricularia gibba HOM05D005715 ORTHO05D007160 1.8e-39 167.2 295 41.0
Psat6g017920 Pisum sativum HOM05D005715 ORTHO05D007160 2.4e-39 166.8 343 36.4
Actinidia10205 Actinidia chinensis HOM05D005715 ORTHO05D007160 7.8e-38 161.8 319 38.9
Lalb_Chr14g0368141 Lupinus albus HOM05D005715 ORTHO05D007160 2.9e-37 159.8 332 37.3
SHI08419 Sapria himalayana HOM05D005715 ORTHO05D000023 2.9e-37 159.8 281 41.6
THA.LOC104825782 Tarenaya hassleriana HOM05D005715 ORTHO05D007160 6.6e-37 158.7 339 35.4
EL10Ac1g02368 Beta vulgaris HOM05D005715 ORTHO05D007160 1.9e-36 157.1 348 36.2
Lalb_Chr24g0399501 Lupinus albus HOM05D005715 ORTHO05D007160 1.9e-36 157.1 338 35.5
THA.LOC104825172 Tarenaya hassleriana HOM05D005715 ORTHO05D007160 1.9e-36 157.1 329 38.0
Nn1g04537 Nelumbo nucifera HOM05D005715 ORTHO05D007160 4.3e-36 156.0 346 35.5
Lj1g0016682 Lotus japonicus HOM05D005715 ORTHO05D007160 5.6e-36 155.6 310 36.5
TAR628G0320 Trochodendron aralioides HOM05D005715 ORTHO05D007160 7.3e-36 155.2 329 38.3
unitig_21.g20630 Utricularia gibba HOM05D005715 ORTHO05D007160 7.3e-36 155.2 252 41.3
Gohir.D06G021600 Gossypium hirsutum HOM05D005715 ORTHO05D007160 9.5e-36 154.8 303 36.6
Aa31LG7G10200 Aethionema arabicum HOM05D005715 ORTHO05D007160 2.1e-35 153.7 325 35.7
CARHR027070 Cardamine hirsuta HOM05D005715 ORTHO05D007160 2.1e-35 153.7 325 38.5
Carub.0001s2602 Capsella rubella HOM05D005715 ORTHO05D007160 1.0e-34 151.4 341 35.5
BraA09t39357Z Brassica rapa HOM05D003723 ORTHO05D004306 1.8e-34 150.6 330 37.0
arahy.Tifrunner.gnm1.ann1.42CAD1 Arachis hypogaea HOM05D005715 ORTHO05D007160 2.3e-34 150.2 401 33.2
A09p38510 Brassica napus HOM05D003723 ORTHO05D004306 3.0e-34 149.8 329 36.8
AT1G27461 Arabidopsis thaliana HOM05D005715 ORTHO05D007160 4.0e-34 149.4 337 36.5
VMungo0647G0294 Vigna mungo HOM05D005715 ORTHO05D007160 4.0e-34 149.4 405 30.6
BcaC01g01604 Brassica carinata HOM05D005715 ORTHO05D007160 6.8e-34 148.7 331 35.0
AL1G40890 Arabidopsis lyrata HOM05D005715 ORTHO05D007160 1.2e-33 147.9 335 36.1
A08p26250 Brassica napus HOM05D005715 ORTHO05D007160 1.5e-33 147.5 334 34.7
C05p26190 Brassica napus HOM05D003723 ORTHO05D004306 2.0e-33 147.1 326 37.4
BraA08t34576Z Brassica rapa HOM05D005715 ORTHO05D007160 2.0e-33 147.1 333 35.1
BolC5t31333H Brassica oleracea HOM05D003723 ORTHO05D004306 2.6e-33 146.7 326 37.4
Lj4P757T25 Lonicera japonica HOM05D005715 ORTHO05D007160 4.4e-33 146.0 318 37.4
BcaC05g26566 Brassica carinata HOM05D005715 ORTHO05D007160 7.5e-33 145.2 326 37.4
Sed0010783 Sechium edule HOM05D005715 ORTHO05D007160 7.5e-33 145.2 311 37.9
arahy.Tifrunner.gnm1.ann1.B5Z1I8 Arachis hypogaea HOM05D003856 ORTHO05D004547 1.3e-32 144.4 304 36.8
BcaC01g06948 Brassica carinata HOM05D005715 ORTHO05D007160 1.3e-32 144.4 326 35.9
C03p74190 Brassica napus HOM05D005715 ORTHO05D007160 1.3e-32 144.4 331 34.7
HanXRQChr15g0495001 Helianthus annuus HOM05D005715 ORTHO05D007160 1.3e-32 144.4 341 35.5
Nn5g30612 Nelumbo nucifera HOM05D005715 ORTHO05D007160 1.3e-32 144.4 349 33.8
Thhalv10009308m.g Eutrema salsugineum HOM05D005715 ORTHO05D007160 6.4e-32 142.1 339 34.2
Gohir.A06G024500 Gossypium hirsutum HOM05D005715 ORTHO05D007160 1.8e-31 140.6 315 34.6
arahy.Tifrunner.gnm1.ann1.3URM83 Arachis hypogaea HOM05D005715 ORTHO05D009860 1.2e-30 137.9 399 33.3
DCAR_012819 Daucus carota HOM05D005715 ORTHO05D007160 4.6e-30 136.0 300 36.7
Hma1.2p1_0819F.1_g223600 Hydrangea macrophylla HOM05D005715 ORTHO05D007160 1.7e-29 134.0 187 44.9
Hma1.2p1_3250F.1_g334460 Hydrangea macrophylla HOM05D005715 ORTHO05D007160 6.6e-29 132.1 188 44.7
Sp1g23710 Schrenkiella parvula HOM05D005715 ORTHO05D007160 1.5e-28 131.0 339 34.2
Aqoxy6G02590 Aquilegia oxysepala HOM05D005715 ORTHO05D007160 3.3e-28 129.8 337 31.5
ECA232G0180 Erigeron canadensis HOM05D005715 ORTHO05D007160 3.3e-28 129.8 328 32.9
BolC3t19677H Brassica oleracea HOM05D003723 ORTHO05D004306 2.1e-27 127.1 311 35.0
Sed0026939 Sechium edule HOM05D005715 ORTHO05D007160 2.8e-27 126.7 244 40.2
Zm00001eb325870 Zea mays HOM05D005715 ORTHO05D007160 3.6e-27 126.3 303 35.3
AUR62022469 Chenopodium quinoa HOM05D005715 ORTHO05D007160 6.2e-27 125.6 190 40.0
MBI16_g02456_MAGBIO Magnolia biondii HOM05D005715 ORTHO05D007160 1.4e-26 124.4 322 36.0
AUR62037422 Chenopodium quinoa HOM05D005715 ORTHO05D007160 2.3e-26 123.6 185 43.2
CsaV3_4G035110 Cucumis sativus L. HOM05D005715 ORTHO05D007160 4.0e-26 122.9 158 45.6
TPR.G825 Trifolium pratense HOM05D005715 ORTHO05D007160 8.9e-26 121.7 188 40.4
PSO541G4157 Papaver somniferum HOM05D005715 ORTHO05D007160 1.5e-25 120.9 185 40.0
DCAR_008858 Daucus carota HOM05D005715 ORTHO05D007160 2.6e-25 120.2 296 31.4
Os07g0585700 Oryza sativa ssp. japonica HOM05D005715 ORTHO05D007160 5.8e-25 119.0 315 34.6
Zm00001eb108020 Zea mays HOM05D005715 ORTHO05D007160 5.8e-25 119.0 291 35.1
PSO675G4043 Papaver somniferum HOM05D005715 ORTHO05D007160 1.7e-24 117.5 157 40.1
ATR0739G069 Amborella trichopoda HOM05D005715 ORTHO05D007160 3.5e-22 109.8 343 30.3
BcaC01g01609 Brassica carinata HOM05D005715 ORTHO05D007160 1.3e-21 107.8 120 44.2
BcaC05g26750 Brassica carinata HOM05D005715 ORTHO05D007160 7.3e-20 102.1 255 34.1
Migut.N02788 Erythranthe guttata HOM05D005715 ORTHO05D007160 4.7e-19 99.4 72 70.8
HPP92_024906 Vanilla planifolia HOM05D005715 ORTHO05D007160 4.7e-19 99.4 294 33.0
GSVIVG01009335001 Vitis vinifera HOM05D005715 ORTHO05D007160 9.2e-15 85.1 229 31.9
Zm00001eb020940 Zea mays HOM05D005715 ORTHO05D007160 1.3e-13 81.3 169 34.3
Pp3c7_20380 Physcomitrium patens HOM05D005715 ORTHO05D007160 3.9e-13 79.7 139 36.0
Duzib041G0674 Durio zibethinus HOM05D005715 ORTHO05D007160 5.1e-13 79.3 108 45.4
SEGI_17393 Sequoiadendron giganteum HOM05D005715 ORTHO05D007160 1.9e-12 77.4 153 35.3
SEGI_33265 Sequoiadendron giganteum HOM05D005715 ORTHO05D007160 7.3e-12 75.5 142 34.5
Pp3c11_8450 Physcomitrium patens HOM05D005715 ORTHO05D007160 6.2e-11 72.4 156 32.7
Pp3c7_18640 Physcomitrium patens HOM05D005715 ORTHO05D007160 8.1e-11 72.0 155 32.9
TPR.G12997 Trifolium pratense HOM05D005715 ORTHO05D007160 2.4e-10 70.5 76 51.3
Mapoly0094s0025 Marchantia polymorpha HOM05D005715 ORTHO05D007160 3.1e-10 70.1 78 50.0
Pp3c11_8920 Physcomitrium patens HOM05D005715 ORTHO05D007160 9.9e-09 65.1 155 31.0
ATR0609G089 Amborella trichopoda HOM05D001735 ORTHO05D001640 9.2e-07 58.5 285 27.7
BcaC05g26749 Brassica carinata HOM05D005715 ORTHO05D007160 7.8e-06 55.5 196 31.1


User provided reference genes

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