Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold151G36757 Striga asiatica HOM05D006041 ORTHO05D007473 1.8e-117 426.0 224 100.0
SGA_v2.0_scaffold139G35400 Striga asiatica HOM05D006041 ORTHO05D007473 1.9e-87 326.2 241 73.0
Migut.E00465 Erythranthe guttata HOM05D006041 ORTHO05D007473 1.3e-75 287.0 233 69.5
SGA_v2.0_scaffold151G36726 Striga asiatica HOM05D006041 ORTHO05D007473 3.0e-72 275.8 199 76.9
MSTRG.2140 Avicennia marina HOM05D006041 ORTHO05D007473 3.9e-72 275.4 229 66.8
Oeu016281.1 Olea europaea HOM05D006041 ORTHO05D007473 7.3e-71 271.2 229 65.1
CSS0021041 Camellia sinensis var. sinensis HOM05D006041 ORTHO05D007473 1.2e-70 270.4 227 66.1
CSS0021655 Camellia sinensis var. sinensis HOM05D006041 ORTHO05D007473 1.2e-70 270.4 227 66.1
SalBow2G0340 Salvia bowleyana HOM05D006041 ORTHO05D007473 6.2e-70 268.1 231 63.6
Cc11_g08020 Coffea canephora HOM05D006041 ORTHO05D007473 2.2e-67 259.6 229 65.5
Nitab4.5_0009602g0010 Nicotiana tabacum HOM05D006041 ORTHO05D007473 6.4e-67 258.1 229 61.6
Nitab4.5_0000238g0060 Nicotiana tabacum HOM05D006041 ORTHO05D007473 1.1e-66 257.3 229 61.6
Dinv26256 Davidia involucrata HOM05D006041 ORTHO05D007473 9.2e-66 254.2 227 63.0
Peaxi162Scf00655g00023 Petunia axillaris HOM05D006041 ORTHO05D007473 1.6e-65 253.4 229 61.6
Solyc01g005430.3 Solanum lycopersicum HOM05D006041 ORTHO05D007473 2.1e-65 253.1 229 59.4
CAN.G1130.10 Capsicum annuum HOM05D006041 ORTHO05D007473 2.7e-65 252.7 229 59.8
vmacro00556 Vaccinium macrocarpon HOM05D006041 ORTHO05D007473 2.7e-65 252.7 227 62.6
Sopen01g001440 Solanum pennellii HOM05D006041 ORTHO05D007473 3.5e-65 252.3 229 59.0
PGSC0003DMG400032118 Solanum tuberosum HOM05D006041 ORTHO05D007473 7.8e-65 251.1 229 59.0
Rhsim09G0037900 Rhododendron simsii HOM05D006041 ORTHO05D007473 1.0e-64 250.8 237 60.8
MD13G1029800 Malus domestica HOM05D006041 ORTHO05D007473 2.5e-63 246.1 230 59.1
Prupe.1G331600 Prunus persica HOM05D006041 ORTHO05D007473 4.3e-63 245.4 233 57.9
Manes.15G133200 Manihot esculenta HOM05D006041 ORTHO05D007473 1.6e-62 243.4 228 61.0
TAR371G0590 Trochodendron aralioides HOM05D006041 ORTHO05D007473 1.6e-62 243.4 226 59.7
DCAR_007323 Daucus carota HOM05D006041 ORTHO05D007473 2.1e-62 243.0 228 60.5
Nn4g24305 Nelumbo nucifera HOM05D006041 ORTHO05D007473 2.8e-62 242.7 227 59.0
Haze_10912 Corylus avellana HOM05D006041 ORTHO05D007473 4.7e-62 241.9 233 59.7
MD16G1020600 Malus domestica HOM05D006041 ORTHO05D007473 6.2e-62 241.5 229 58.5
unitig_27.g25310 Utricularia gibba HOM05D006041 ORTHO05D007473 6.2e-62 241.5 226 61.5
Thecc.02G290600 Theobroma cacao HOM05D006041 ORTHO05D007473 1.1e-61 240.7 228 59.2
TAR629G0174 Trochodendron aralioides HOM05D006041 ORTHO05D007473 4.0e-61 238.8 221 58.8
Cfa015002 Carpinus fangiana HOM05D006041 ORTHO05D007473 6.8e-61 238.0 233 59.2
Ciclev10015068m.g Citrus clementina HOM05D006041 ORTHO05D007473 6.8e-61 238.0 226 59.3
Lj6A740T67 Lonicera japonica HOM05D006041 ORTHO05D007473 6.8e-61 238.0 223 59.6
Duzib251G0740 Durio zibethinus HOM05D006041 ORTHO05D007473 2.6e-60 236.1 227 60.8
HanXRQChr08g0212441 Helianthus annuus HOM05D006041 ORTHO05D007473 2.6e-60 236.1 227 57.3
Sabra08G0102300 Salix brachista HOM05D006041 ORTHO05D007473 2.6e-60 236.1 229 59.4
MBI19_g21093_MAGBIO Magnolia biondii HOM05D006041 ORTHO05D007473 3.4e-60 235.7 227 55.5
COL.COLO4_16567 Corchorus olitorius HOM05D006041 ORTHO05D007473 5.8e-60 235.0 228 57.9
Duzib268G1057 Durio zibethinus HOM05D006041 ORTHO05D007473 5.8e-60 235.0 227 59.9
Thhalv10004151m.g Eutrema salsugineum HOM05D006041 ORTHO05D007473 9.9e-60 234.2 221 57.0
RcHm_v2.0_Chr4g0443331 Rosa chinensis HOM05D006041 ORTHO05D007473 9.9e-60 234.2 237 57.0
TWI74G1002 Tripterygium wilfordii HOM05D006041 ORTHO05D007473 2.2e-59 233.0 233 59.7
Gohir.A01G147900 Gossypium hirsutum HOM05D006041 ORTHO05D007473 8.4e-59 231.1 222 59.5
PGR142G4228 Punica granatum HOM05D006041 ORTHO05D007473 1.4e-58 230.3 226 56.6
Eucgr.G02114 Eucalyptus grandis HOM05D006041 ORTHO05D007473 4.1e-58 228.8 227 54.6
Sp2g13100 Schrenkiella parvula HOM05D006041 ORTHO05D007473 4.1e-58 228.8 224 57.6
Haze_10913 Corylus avellana HOM05D006041 ORTHO05D007473 9.2e-58 227.6 259 53.7
FvH4_4g33820 Fragaria vesca HOM05D006041 ORTHO05D007473 2.1e-57 226.5 233 56.7
CsaV3_5G028000 Cucumis sativus L. HOM05D006041 ORTHO05D007473 2.7e-57 226.1 227 56.8
Gorai.002G173400 Gossypium raimondii HOM05D006041 ORTHO05D007473 2.7e-57 226.1 222 58.6
Lsat_1_v5_gn_8_45641 Lactuca sativa HOM05D006041 ORTHO05D007473 2.7e-57 226.1 230 55.7
GSVIVG01011678001 Vitis vinifera HOM05D006041 ORTHO05D007473 2.7e-57 226.1 191 65.4
CARHR144220 Cardamine hirsuta HOM05D006041 ORTHO05D007473 3.5e-57 225.7 222 56.8
Atru.chr11.510 Acer truncatum HOM05D006041 ORTHO05D007473 4.6e-57 225.3 226 56.2
BcaC06g31287 Brassica carinata HOM05D006041 ORTHO05D007473 4.6e-57 225.3 221 57.0
Gorai.005G158800 Gossypium raimondii HOM05D006041 ORTHO05D007473 4.6e-57 225.3 227 57.7
Lalb_Chr05g0222281 Lupinus albus HOM05D006041 ORTHO05D007473 4.6e-57 225.3 227 55.5
Phvul.002G319700 Phaseolus vulgaris HOM05D006041 ORTHO05D007473 4.6e-57 225.3 230 56.1
Cpa.g.c27573.2 Carica papaya HOM05D006041 ORTHO05D007473 1.0e-56 224.2 225 60.0
Gohir.D01G141100 Gossypium hirsutum HOM05D006041 ORTHO05D007473 1.3e-56 223.8 222 58.1
TPR.G32714 Trifolium pratense HOM05D006041 ORTHO05D007473 2.3e-56 223.0 231 53.2
MELO3C005281.2 Cucumis melo HOM05D006041 ORTHO05D007473 3.9e-56 222.2 227 55.9
Carub.0005s0060 Capsella rubella HOM05D006041 ORTHO05D007473 5.1e-56 221.9 226 55.8
BcaC06g34139 Brassica carinata HOM05D006041 ORTHO05D007473 6.6e-56 221.5 221 55.2
BolC7t43765H Brassica oleracea HOM05D006041 ORTHO05D007473 6.6e-56 221.5 221 55.2
THA.LOC104805081 Tarenaya hassleriana HOM05D006041 ORTHO05D007473 8.6e-56 221.1 232 55.2
AL5G10750 Arabidopsis lyrata HOM05D006041 ORTHO05D007473 1.1e-55 220.7 221 56.6
C07p32270 Brassica napus HOM05D006041 ORTHO05D007473 1.5e-55 220.3 221 54.8
AT2G01650 Arabidopsis thaliana HOM05D006041 ORTHO05D007473 1.9e-55 219.9 221 56.6
A06p44210 Brassica napus HOM05D006041 ORTHO05D007473 2.5e-55 219.5 221 55.2
FAN17G0347 Fragaria x ananassa HOM05D006041 ORTHO05D007473 2.5e-55 219.5 239 55.2
Manes.17G082400 Manihot esculenta HOM05D006041 ORTHO05D007473 2.5e-55 219.5 221 58.4
Aa31LG2G8250 Aethionema arabicum HOM05D006041 ORTHO05D007473 3.3e-55 219.2 229 55.9
Medtr8g104930 Medicago truncatula HOM05D006041 ORTHO05D007473 5.6e-55 218.4 230 53.9
FAN12G3784 Fragaria x ananassa HOM05D006041 ORTHO05D007473 9.6e-55 217.6 241 54.4
Lj4g0006027 Lotus japonicus HOM05D006041 ORTHO05D007473 9.6e-55 217.6 226 54.0
CANSAT01G0691 Cannabis sativa HOM05D006041 ORTHO05D007473 2.1e-54 216.5 236 53.8
EL10Ac6g15713 Beta vulgaris HOM05D006041 ORTHO05D007473 2.8e-54 216.1 230 54.8
Ah.03g145700 Amaranthus hybridus HOM05D006041 ORTHO05D007473 3.6e-54 215.7 227 56.4
Glyma.08G042900 Glycine max HOM05D006041 ORTHO05D007473 3.6e-54 215.7 229 54.1
arahy.Tifrunner.gnm1.ann1.BAL5EB Arachis hypogaea HOM05D006041 ORTHO05D007473 4.7e-54 215.3 228 55.7
Sc03g0001760 Simmondsia chinensis HOM05D006041 ORTHO05D007473 1.1e-53 214.2 229 54.6
BraA06t27296Z Brassica rapa HOM05D006041 ORTHO05D007473 1.8e-53 213.4 221 54.8
Psat7g009240 Pisum sativum HOM05D006041 ORTHO05D007473 1.8e-53 213.4 228 53.1
arahy.Tifrunner.gnm1.ann1.IVEQ23 Arachis hypogaea HOM05D006041 ORTHO05D007473 2.4e-53 213.0 225 54.7
Glyma.05G235400 Glycine max HOM05D006041 ORTHO05D007473 4.0e-53 212.2 233 51.9
ECA233G3443 Erigeron canadensis HOM05D006041 ORTHO05D007473 2.0e-52 209.9 210 55.7
FAN22G1094 Fragaria x ananassa HOM05D006041 ORTHO05D007473 4.4e-52 208.8 252 52.0
VMungo0251G2799 Vigna mungo HOM05D006041 ORTHO05D007473 4.4e-52 208.8 232 52.2
ATR0753G012 Amborella trichopoda HOM05D006041 ORTHO05D007473 7.6e-52 208.0 223 53.8
AUR62003915 Chenopodium quinoa HOM05D006041 ORTHO05D007473 7.6e-52 208.0 230 53.5
Ca_17289_v3 Cicer arietinum L. HOM05D006041 ORTHO05D007473 6.4e-51 204.9 230 52.6
Sed0015632 Sechium edule HOM05D006041 ORTHO05D007473 1.1e-50 204.1 232 52.2
PSO017G0247 Papaver somniferum HOM05D006041 ORTHO05D007473 1.9e-50 203.4 231 47.2
CDE07G0862 Ceratophyllum demersum HOM05D006041 ORTHO05D007473 2.4e-50 203.0 227 52.4
PSO478G4621 Papaver somniferum HOM05D006041 ORTHO05D007473 4.2e-50 202.2 231 46.8
Aqoxy3G00037 Aquilegia oxysepala HOM05D006041 ORTHO05D007473 1.6e-49 200.3 256 47.7
HPP92_009644 Vanilla planifolia HOM05D006041 ORTHO05D007473 2.3e-48 196.4 243 47.3
ClCG01G006460 Citrullus lanatus HOM05D006041 ORTHO05D007473 2.8e-46 189.5 227 51.1
Zm00001eb099250 Zea mays HOM05D006041 ORTHO05D007473 5.4e-42 175.3 229 45.4
Os09g0401600 Oryza sativa ssp. japonica HOM05D006041 ORTHO05D007473 3.9e-40 169.1 230 45.2
Aa31LG3G2990 Aethionema arabicum HOM05D006041 ORTHO05D007473 7.4e-39 164.9 225 46.7
Zm00001eb312180 Zea mays HOM05D006041 ORTHO05D007473 7.4e-39 164.9 231 44.6
Dinv18641 Davidia involucrata HOM05D006041 ORTHO05D007473 1.7e-35 153.7 145 61.4
CBR_g3474 Chara braunii HOM05D006041 ORTHO05D007473 7.1e-34 148.3 183 45.9
AUR62038228 Chenopodium quinoa HOM05D006041 ORTHO05D007473 1.6e-33 147.1 223 42.6
CiPaw.05G190300 Carya illinoinensis HOM05D006041 ORTHO05D007473 2.1e-33 146.7 151 55.0
Potri.008G133700 Populus trichocarpa HOM05D006041 ORTHO05D007473 1.8e-32 143.7 153 56.2
Gohir.A03G117900 Gossypium hirsutum HOM05D006041 ORTHO05D007473 1.6e-30 137.1 151 54.3
Gohir.D02G141500 Gossypium hirsutum HOM05D006041 ORTHO05D007473 6.2e-30 135.2 154 54.5
QL03p034952 Quercus lobata HOM05D006041 ORTHO05D007473 4.0e-29 132.5 172 50.0
Aa31sc215G20 Aethionema arabicum HOM05D006041 ORTHO05D007473 8.4e-27 124.8 147 50.3
Sed0013468 Sechium edule HOM05D006041 ORTHO05D007473 1.9e-26 123.6 150 49.3
CDE06G1197 Ceratophyllum demersum HOM05D006041 ORTHO05D007473 2.1e-25 120.2 137 51.1
SEGI_21307 Sequoiadendron giganteum HOM05D006041 ORTHO05D007473 4.3e-23 112.5 135 48.9
Mapoly0081s0058 Marchantia polymorpha HOM05D006041 ORTHO05D007473 1.0e-16 91.3 143 42.0
SMO276G0024 Selaginella moellendorffii HOM05D006041 ORTHO05D007473 5.9e-12 75.5 94 42.6
MCO04G546 Micromonas commoda HOM05D006041 ORTHO05D007473 3.2e-10 69.7 209 28.2
Actinidia34031 Actinidia chinensis HOM05D006041 ORTHO05D007473 3.0e-08 63.2 70 50.0
CAN.G3.6 Capsicum annuum HOM05D006041 ORTHO05D007473 5.1e-08 62.4 135 34.8
CANSAT64G0886 Cannabis sativa HOM05D004631 ORTHO05D005223 4.4e-07 59.3 125 34.4
Ah.11g049900 Amaranthus hybridus HOM05D000470 ORTHO05D000348 1.3e-06 57.8 117 35.9
Eucgr.I01692 Eucalyptus grandis HOM05D004631 ORTHO05D005223 1.3e-06 57.8 142 34.5
MD17G1018100 Malus domestica HOM05D004631 ORTHO05D005223 2.2e-06 57.0 171 30.4
Ciclev10016175m.g Citrus clementina HOM05D004631 ORTHO05D005223 3.7e-06 56.2 114 36.8
Sed0000329 Sechium edule HOM05D004631 ORTHO05D005223 3.7e-06 56.2 170 30.6
Duzib147G1024 Durio zibethinus HOM05D004631 ORTHO05D005223 4.8e-06 55.8 120 33.3
Hma1.2p1_0089F.1_g045430 Hydrangea macrophylla HOM05D006041 ORTHO05D007473 4.8e-06 55.8 55 50.9
RcHm_v2.0_Chr2g0174181 Rosa chinensis HOM05D004631 ORTHO05D005223 4.8e-06 55.8 113 32.7
arahy.Tifrunner.gnm1.ann1.I8TFGP Arachis hypogaea HOM05D006041 ORTHO05D007473 6.3e-06 55.5 228 28.9
MD09G1017300 Malus domestica HOM05D004631 ORTHO05D005223 6.3e-06 55.5 142 31.7
MSTRG.3110 Avicennia marina HOM05D004631 ORTHO05D005223 8.2e-06 55.1 114 34.2


User provided reference genes

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