Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold14G07122 Striga asiatica HOM05D066374 ORTHO05D037484 3.0e-207 724.9 361 100.0
SGA_v2.0_scaffold45G17278 Striga asiatica HOM05D066374 ORTHO05D405954 1.4e-100 370.5 189 97.9
SGA_v2.0_scaffold45G17279 Striga asiatica HOM05D001660 ORTHO05D037484 2.2e-37 160.6 115 74.8
SGA_v2.0_scaffold66G22449 Striga asiatica HOM05D001660 ORTHO05D006486 1.2e-27 128.3 75 84.0
CSS0019633 Camellia sinensis var. sinensis HOM05D001660 ORTHO05D006486 1.8e-26 124.4 75 81.3
GSVIVG01029217001 Vitis vinifera HOM05D001660 ORTHO05D006486 3.0e-26 123.6 75 81.3
PGR102G1486 Punica granatum HOM05D001660 ORTHO05D006486 4.0e-26 123.2 75 80.0
Cpa.g.sc233.12 Carica papaya HOM05D001660 ORTHO05D006486 5.2e-26 122.9 75 80.0
SalBow6G3880 Salvia bowleyana HOM05D001660 ORTHO05D006486 6.7e-26 122.5 75 78.7
vmacro06014 Vaccinium macrocarpon HOM05D001660 ORTHO05D006486 8.8e-26 122.1 87 70.1
Actinidia17318 Actinidia chinensis HOM05D001660 ORTHO05D006486 1.2e-25 121.7 75 78.7
Phvul.003G145700 Phaseolus vulgaris HOM05D001660 ORTHO05D006486 1.2e-25 121.7 75 78.7
Psat5g065160 Pisum sativum HOM05D001660 ORTHO05D006486 1.5e-25 121.3 75 80.0
Medtr4g128090 Medicago truncatula HOM05D001660 ORTHO05D006486 2.0e-25 120.9 75 80.0
MSTRG.6215 Avicennia marina HOM05D001660 ORTHO05D006486 2.6e-25 120.6 75 77.3
Hma1.2p1_1025F.1_g249290 Hydrangea macrophylla HOM05D001660 ORTHO05D006486 2.6e-25 120.6 75 76.0
Manes.14G153800 Manihot esculenta HOM05D001660 ORTHO05D006486 3.3e-25 120.2 79 75.9
Potri.018G092500 Populus trichocarpa HOM05D001660 ORTHO05D006486 3.3e-25 120.2 75 80.0
CAN.G2214.1 Capsicum annuum HOM05D001660 ORTHO05D006486 4.4e-25 119.8 75 77.3
Thecc.09G177800 Theobroma cacao HOM05D001660 ORTHO05D006486 4.4e-25 119.8 82 73.2
Lsat_1_v5_gn_8_67640 Lactuca sativa HOM05D001660 ORTHO05D006486 5.7e-25 119.4 75 77.3
Peaxi162Scf00231g00616 Petunia axillaris HOM05D001660 ORTHO05D006486 5.7e-25 119.4 75 76.0
THA.LOC104811788 Tarenaya hassleriana HOM05D001660 ORTHO05D006486 5.7e-25 119.4 75 77.3
Ah.09g229880 Amaranthus hybridus HOM05D001660 ORTHO05D006486 7.5e-25 119.0 96 67.7
Nitab4.5_0000730g0110 Nicotiana tabacum HOM05D001660 ORTHO05D006486 7.5e-25 119.0 75 76.0
Nitab4.5_0004134g0020 Nicotiana tabacum HOM05D001660 ORTHO05D006486 7.5e-25 119.0 75 76.0
Sp6g19150 Schrenkiella parvula HOM05D001660 ORTHO05D006486 7.5e-25 119.0 75 78.7
Solyc10g054280.2 Solanum lycopersicum HOM05D001660 ORTHO05D006486 7.5e-25 119.0 75 76.0
Sopen10g024180 Solanum pennellii HOM05D001660 ORTHO05D006486 7.5e-25 119.0 75 76.0
EL10Ac8g18284 Beta vulgaris HOM05D001660 ORTHO05D006486 9.7e-25 118.6 75 80.0
Ca_21225_v3 Cicer arietinum L. HOM05D001660 ORTHO05D006486 9.7e-25 118.6 82 73.2
Eucgr.C02309 Eucalyptus grandis HOM05D001660 ORTHO05D006486 9.7e-25 118.6 75 76.0
Thhalv10014532m.g Eutrema salsugineum HOM05D001660 ORTHO05D006486 9.7e-25 118.6 75 77.3
Sc14g0001270 Simmondsia chinensis HOM05D001660 ORTHO05D006486 9.7e-25 118.6 75 77.3
VMungo1215G3132 Vigna mungo HOM05D001660 ORTHO05D006486 9.7e-25 118.6 75 77.3
Dinv41247 Davidia involucrata HOM05D001660 ORTHO05D006486 1.3e-24 118.2 75 76.0
Dinv42722 Davidia involucrata HOM05D001660 ORTHO05D006486 1.3e-24 118.2 75 74.7
Dinv43379 Davidia involucrata HOM05D001660 ORTHO05D006486 1.3e-24 118.2 75 74.7
Sabra18G0079700 Salix brachista HOM05D001660 ORTHO05D006486 1.3e-24 118.2 75 78.7
Gohir.A05G004700 Gossypium hirsutum HOM05D001660 ORTHO05D006486 1.7e-24 117.9 82 72.0
Gohir.D05G005600 Gossypium hirsutum HOM05D001660 ORTHO05D006486 1.7e-24 117.9 82 72.0
Gorai.009G005400 Gossypium raimondii HOM05D001660 ORTHO05D006486 1.7e-24 117.9 82 72.0
TWI32G0852 Tripterygium wilfordii HOM05D001660 ORTHO05D006486 1.7e-24 117.9 75 76.0
Ah.14g083850 Amaranthus hybridus HOM05D001660 ORTHO05D006486 2.2e-24 117.5 75 77.3
Carub.0008s1795 Capsella rubella HOM05D001660 ORTHO05D006486 2.2e-24 117.5 75 77.3
CARHR271230 Cardamine hirsuta HOM05D001660 ORTHO05D006486 2.2e-24 117.5 75 77.3
Cc06_g13240 Coffea canephora HOM05D001660 ORTHO05D006486 2.2e-24 117.5 75 74.7
FAN07G1551 Fragaria x ananassa HOM05D001660 ORTHO05D006486 2.2e-24 117.5 75 77.3
Glyma.13G096400 Glycine max HOM05D001660 ORTHO05D006486 2.2e-24 117.5 75 77.3
Rhsim03G0264400 Rhododendron simsii HOM05D001660 ORTHO05D006486 2.2e-24 117.5 75 80.0
Atru.chr7.624 Acer truncatum HOM05D001660 ORTHO05D006486 2.8e-24 117.1 75 73.3
arahy.Tifrunner.gnm1.ann1.RX88G0 Arachis hypogaea HOM05D001660 ORTHO05D006486 2.8e-24 117.1 75 77.3
AT5G57440 Arabidopsis thaliana HOM05D001660 ORTHO05D006486 3.7e-24 116.7 75 77.3
arahy.Tifrunner.gnm1.ann1.0AS7E9 Arachis hypogaea HOM05D001660 ORTHO05D006486 3.7e-24 116.7 75 76.0
arahy.Tifrunner.gnm1.ann1.8SC2X9 Arachis hypogaea HOM05D001660 ORTHO05D006486 3.7e-24 116.7 75 76.0
Cfa013504 Carpinus fangiana HOM05D001660 ORTHO05D006486 3.7e-24 116.7 75 77.3
CiPaw.08G036300 Carya illinoinensis HOM05D001660 ORTHO05D006486 3.7e-24 116.7 75 76.0
Migut.J01480 Erythranthe guttata HOM05D001660 ORTHO05D006486 3.7e-24 116.7 75 76.0
Aqoxy7G03078 Aquilegia oxysepala HOM05D001660 ORTHO05D006486 4.8e-24 116.3 75 73.3
Ciclev10009343m.g Citrus clementina HOM05D001660 ORTHO05D006486 4.8e-24 116.3 75 74.7
COL.COLO4_37698 Corchorus olitorius HOM05D001660 ORTHO05D006486 4.8e-24 116.3 75 77.3
QL02p097765 Quercus lobata HOM05D001660 ORTHO05D006486 4.8e-24 116.3 81 71.6
RcHm_v2.0_Chr4g0402461 Rosa chinensis HOM05D001660 ORTHO05D006486 4.8e-24 116.3 75 74.7
Hund26348 Selenicereus undatus HOM05D001660 ORTHO05D006486 4.8e-24 116.3 75 76.0
arahy.Tifrunner.gnm1.ann1.5J4LWM Arachis hypogaea HOM05D001660 ORTHO05D006486 6.3e-24 115.9 75 76.0
MELO3C017462.2 Cucumis melo HOM05D001660 ORTHO05D006486 6.3e-24 115.9 75 77.3
Nitab4.5_0000455g0030 Nicotiana tabacum HOM05D001660 ORTHO05D006486 6.3e-24 115.9 75 74.7
Prupe.1G086000 Prunus persica HOM05D001660 ORTHO05D006486 6.3e-24 115.9 75 74.7
TPR.G5369 Trifolium pratense HOM05D001660 ORTHO05D006486 6.3e-24 115.9 75 77.3
TAR625G0405 Trochodendron aralioides HOM05D001660 ORTHO05D006486 6.3e-24 115.9 75 76.0
AL8G33410 Arabidopsis lyrata HOM05D001660 ORTHO05D006486 8.2e-24 115.5 75 76.0
BcaB08g36099 Brassica carinata HOM05D001660 ORTHO05D006486 8.2e-24 115.5 75 76.0
BcaC04g19967 Brassica carinata HOM05D001660 ORTHO05D006486 8.2e-24 115.5 75 76.0
A10p14880 Brassica napus HOM05D001660 ORTHO05D006486 8.2e-24 115.5 75 76.0
C09p49300 Brassica napus HOM05D001660 ORTHO05D006486 8.2e-24 115.5 75 76.0
BolC9t57781H Brassica oleracea HOM05D001660 ORTHO05D006486 8.2e-24 115.5 75 76.0
BraA10t43567Z Brassica rapa HOM05D001660 ORTHO05D006486 8.2e-24 115.5 75 76.0
HanXRQChr05g0143001 Helianthus annuus HOM05D001660 ORTHO05D006486 8.2e-24 115.5 75 74.7
ECA236G3152 Erigeron canadensis HOM05D001660 ORTHO05D006486 1.1e-23 115.2 75 73.3
FvH4_4g08210 Fragaria vesca HOM05D001660 ORTHO05D006486 1.1e-23 115.2 75 76.0
FAN12G1428 Fragaria x ananassa HOM05D001660 ORTHO05D006486 1.1e-23 115.2 75 76.0
Aa31LG3G13320 Aethionema arabicum HOM05D001660 ORTHO05D006486 1.4e-23 114.8 75 74.7
Sabra06G0129700 Salix brachista HOM05D001660 ORTHO05D006486 1.4e-23 114.8 74 77.0
CANSAT11G2247 Cannabis sativa HOM05D001660 ORTHO05D006486 2.4e-23 114.0 75 73.3
CsaV3_1G031600 Cucumis sativus L. HOM05D001660 ORTHO05D006486 2.4e-23 114.0 75 76.0
Thhalv10025858m.g Eutrema salsugineum HOM05D001660 ORTHO05D006486 2.4e-23 114.0 75 74.7
AL7G27190 Arabidopsis lyrata HOM05D001660 ORTHO05D006486 3.1e-23 113.6 75 73.3
AUR62023800 Chenopodium quinoa HOM05D001660 ORTHO05D006486 3.1e-23 113.6 75 74.7
DCAR_014698 Daucus carota HOM05D001660 ORTHO05D006486 4.1e-23 113.2 75 73.3
Lalb_Chr12g0199411 Lupinus albus HOM05D001660 ORTHO05D006486 4.1e-23 113.2 75 70.7
Sp7g23870 Schrenkiella parvula HOM05D001660 ORTHO05D006486 4.1e-23 113.2 75 73.3
Aa31LG3G230 Aethionema arabicum HOM05D001660 ORTHO05D006486 5.3e-23 112.8 75 73.3
FAN22G1272 Fragaria x ananassa HOM05D001660 ORTHO05D006486 5.3e-23 112.8 75 74.7
Nn2g12777 Nelumbo nucifera HOM05D001660 ORTHO05D006486 5.3e-23 112.8 75 74.7
AT4G25840 Arabidopsis thaliana HOM05D001660 ORTHO05D006486 7.0e-23 112.5 75 72.0
BcaC06g32782 Brassica carinata HOM05D001660 ORTHO05D006486 7.0e-23 112.5 75 73.3
Carub.0007s1511 Capsella rubella HOM05D001660 ORTHO05D006486 7.0e-23 112.5 75 72.0
ClCG06G013340 Citrullus lanatus HOM05D001660 ORTHO05D006486 7.0e-23 112.5 75 74.7
MD13G1253800 Malus domestica HOM05D001660 ORTHO05D006486 7.0e-23 112.5 75 74.7
PSO063G3992 Papaver somniferum HOM05D001660 ORTHO05D006486 7.0e-23 112.5 75 73.3
Migut.J01481 Erythranthe guttata HOM05D001660 ORTHO05D006486 9.1e-23 112.1 75 73.3
Sed0009942 Sechium edule HOM05D001660 ORTHO05D006486 9.1e-23 112.1 75 74.7
unitig_21.g20649 Utricularia gibba HOM05D003152 ORTHO05D004094 9.1e-23 112.1 76 71.1
A03p56290 Brassica napus HOM05D001660 ORTHO05D006486 1.2e-22 111.7 75 73.3
C07p54540 Brassica napus HOM05D001660 ORTHO05D006486 1.2e-22 111.7 75 73.3
BolC7t45942H Brassica oleracea HOM05D001660 ORTHO05D006486 1.2e-22 111.7 75 73.3
BraA03t14700Z Brassica rapa HOM05D001660 ORTHO05D006486 1.2e-22 111.7 75 73.3
CARHR233300 Cardamine hirsuta HOM05D001660 ORTHO05D006486 4.5e-22 109.8 75 70.7
Lalb_Chr13g0300231 Lupinus albus HOM05D001660 ORTHO05D006486 5.9e-22 109.4 75 70.7
FAN17G0257 Fragaria x ananassa HOM05D001660 ORTHO05D006486 7.7e-22 109.0 75 72.0
PSO017G4075 Papaver somniferum HOM05D001660 ORTHO05D006486 1.0e-21 108.6 75 70.7
Phvul.003G145800 Phaseolus vulgaris HOM05D001660 ORTHO05D006486 1.3e-21 108.2 75 70.7
AUR62002388 Chenopodium quinoa HOM05D001660 ORTHO05D006486 2.2e-21 107.5 75 70.7
VMungo1215G0755 Vigna mungo HOM05D001660 ORTHO05D006486 2.5e-20 104.0 75 66.7
Eucgr.C02313 Eucalyptus grandis HOM05D001660 ORTHO05D006486 3.2e-20 103.6 69 73.9
CDE04G2961 Ceratophyllum demersum HOM05D001660 ORTHO05D006486 1.2e-19 101.7 75 66.7
Duzib168G0313 Durio zibethinus HOM05D001660 ORTHO05D006486 2.7e-19 100.5 65 76.9
TPR.G5384 Trifolium pratense HOM05D001660 ORTHO05D006486 2.7e-19 100.5 75 66.7
MBI16_g39832_MAGBIO Magnolia biondii HOM05D001660 ORTHO05D006486 1.4e-18 98.2 75 66.7
Os08g0243600 Oryza sativa ssp. japonica HOM05D001660 ORTHO05D006486 5.2e-18 96.3 75 61.3
Lj4g0006839 Lotus japonicus HOM05D001660 ORTHO05D006486 6.8e-18 95.9 67 71.6
ATR1149G046 Amborella trichopoda HOM05D001660 ORTHO05D006486 3.4e-17 93.6 75 65.3
ATR0580G358 Amborella trichopoda HOM05D001660 ORTHO05D006486 1.7e-16 91.3 75 62.7
Pp3c21_16490 Physcomitrium patens HOM05D001660 ORTHO05D006486 3.7e-16 90.1 75 57.3
Mapoly0050s0123 Marchantia polymorpha HOM05D001660 ORTHO05D006486 9.1e-15 85.5 75 57.3
AagrBONN_evm.TU.Sc2ySwM_369.140 Anthoceros agrestis HOM05D001660 ORTHO05D006486 2.0e-14 84.3 75 54.7
SMO115G0322 Selaginella moellendorffii HOM05D001660 ORTHO05D006486 7.7e-14 82.4 87 48.3
Zm00001eb412460 Zea mays HOM05D001660 ORTHO05D006486 2.3e-13 80.9 83 48.2
SGA_v2.0_scaffold69G23256 Striga asiatica HOM05D000011 ORTHO05D000018 2.9e-13 80.5 46 82.6
SGA_v2.0_scaffold207G41897 Striga asiatica HOM05D000802 ORTHO05D001074 8.6e-13 79.0 96 50.0
RcHm_v2.0_Chr6g0273661 Rosa chinensis HOM05D001660 ORTHO05D006486 3.2e-12 77.0 51 70.6
RcHm_v2.0_Chr2g0131751 Rosa chinensis HOM05D001660 ORTHO05D037484 5.5e-12 76.3 61 65.6
HPP92_021946 Vanilla planifolia HOM05D001660 ORTHO05D006486 9.5e-12 75.5 57 61.4
SGA_v2.0_scaffold265G46069 Striga asiatica HOM05D019432 ORTHO05D403192 1.2e-11 75.1 156 39.1
Oeu042167.1 Olea europaea HOM05D001660 ORTHO05D006486 1.4e-10 71.6 46 73.9
Eucgr.C02310 Eucalyptus grandis HOM05D001660 ORTHO05D006486 1.8e-10 71.2 47 70.2
Haze_22096 Corylus avellana HOM05D001660 ORTHO05D006486 2.3e-10 70.9 47 72.3
RcHm_v2.0_Chr6g0266651 Rosa chinensis HOM05D001660 ORTHO05D006486 3.0e-10 70.5 50 66.0
Cre09.g401330 Chlamydomonas reinhardtii HOM05D001660 ORTHO05D006486 2.8e-08 63.9 76 42.1
SGA_v2.0_scaffold81G26103 Striga asiatica HOM05D019432 ORTHO05D007568 3.1e-07 60.5 121 42.1
SEGI_10124 Sequoiadendron giganteum HOM05D001660 ORTHO05D006486 4.1e-07 60.1 47 57.4
CBR_g36378 Chara braunii HOM05D001660 ORTHO05D000002 5.4e-07 59.7 57 49.1
SHI49588 Sapria himalayana HOM05D001660 ORTHO05D006486 1.2e-06 58.5 45 60.0


User provided reference genes

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