Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold14G07072 Striga asiatica HOM05D005719 ORTHO05D007030 3.9e-301 1037.3 525 100.0
Migut.C00296 Erythranthe guttata HOM05D005719 ORTHO05D007030 2.2e-179 632.9 525 64.8
MSTRG.25002 Avicennia marina HOM05D005719 ORTHO05D007030 7.0e-173 611.3 524 63.5
Oeu035376.1 Olea europaea HOM05D005719 ORTHO05D007030 1.3e-166 590.5 515 61.0
unitig_749.g13864 Utricularia gibba HOM05D005719 ORTHO05D000442 1.5e-146 523.9 524 54.6
CSS0009932 Camellia sinensis var. sinensis HOM05D005719 ORTHO05D007030 8.3e-142 508.1 532 52.1
Cc10_g08220 Coffea canephora HOM05D005719 ORTHO05D007030 3.2e-141 506.1 525 54.3
Hma1.2p1_0010F.1_g006360 Hydrangea macrophylla HOM05D005719 ORTHO05D007030 7.8e-140 501.5 521 54.9
Nitab4.5_0001608g0030 Nicotiana tabacum HOM05D005719 ORTHO05D007030 3.0e-139 499.6 523 52.4
Actinidia19605 Actinidia chinensis HOM05D005719 ORTHO05D007030 3.6e-137 492.7 527 50.3
vmacro04622 Vaccinium macrocarpon HOM05D005719 ORTHO05D007030 5.8e-135 485.3 525 50.5
GSVIVG01009231001 Vitis vinifera HOM05D005719 ORTHO05D007030 2.0e-132 476.9 455 55.2
Gohir.A05G217800 Gossypium hirsutum HOM05D005719 ORTHO05D007030 6.0e-132 475.3 522 50.0
Gorai.009G226700 Gossypium raimondii HOM05D005719 ORTHO05D007030 1.0e-131 474.6 520 49.8
Sc02g0008400 Simmondsia chinensis HOM05D005719 ORTHO05D007030 8.6e-131 471.5 526 49.6
Duzib093G1837 Durio zibethinus HOM05D005719 ORTHO05D007030 3.3e-130 469.5 523 50.1
Gohir.D05G219700 Gossypium hirsutum HOM05D005719 ORTHO05D007030 1.2e-129 467.6 520 49.4
QL12p040011 Quercus lobata HOM05D005719 ORTHO05D007030 2.8e-129 466.5 535 50.1
Sopen02g003330 Solanum pennellii HOM05D005719 ORTHO05D007030 5.2e-128 462.2 522 49.0
CiPaw.08G058000 Carya illinoinensis HOM05D005719 ORTHO05D007030 1.5e-127 460.7 524 49.4
EL10Ac1g02246 Beta vulgaris HOM05D005719 ORTHO05D007030 2.6e-127 459.9 528 49.4
Sabra02G0085500 Salix brachista HOM05D005719 ORTHO05D007030 4.4e-127 459.1 527 49.5
TWI56G1147 Tripterygium wilfordii HOM05D005719 ORTHO05D007030 9.8e-127 458.0 522 49.2
Manes.18G055200 Manihot esculenta HOM05D005719 ORTHO05D007030 2.2e-126 456.8 524 50.2
Solyc02g014380.3 Solanum lycopersicum HOM05D005719 ORTHO05D007030 2.9e-126 456.4 522 48.1
Thecc.08G076500 Theobroma cacao HOM05D005719 ORTHO05D007030 2.9e-126 456.4 518 49.4
Haze_22505 Corylus avellana HOM05D005719 ORTHO05D007030 6.4e-126 455.3 552 48.6
CiPaw.07G161600 Carya illinoinensis HOM05D005719 ORTHO05D007030 1.6e-124 450.7 503 50.5
RcHm_v2.0_Chr7g0233191 Rosa chinensis HOM05D005719 ORTHO05D007030 2.1e-124 450.3 530 46.8
ECA240G4523 Erigeron canadensis HOM05D005719 ORTHO05D007030 6.0e-124 448.7 524 48.7
MD15G1392600 Malus domestica HOM05D005719 ORTHO05D007030 1.3e-123 447.6 531 47.5
TAR628G1450 Trochodendron aralioides HOM05D005719 ORTHO05D007030 2.3e-123 446.8 530 49.2
MD08G1208600 Malus domestica HOM05D005719 ORTHO05D007030 3.9e-123 446.0 533 46.9
Prupe.1G540100 Prunus persica HOM05D005719 ORTHO05D007030 8.6e-123 444.9 530 47.2
TAR381G0820 Trochodendron aralioides HOM05D005719 ORTHO05D007030 1.1e-122 444.5 479 49.7
Glyma.06G092200 Glycine max HOM05D005719 ORTHO05D007030 2.5e-122 443.4 520 47.9
HanXRQChr03g0065451 Helianthus annuus HOM05D005719 ORTHO05D007030 9.5e-122 441.4 524 48.3
arahy.Tifrunner.gnm1.ann1.SLT0HR Arachis hypogaea HOM05D005719 ORTHO05D007030 2.8e-121 439.9 524 47.5
Eucgr.F02170 Eucalyptus grandis HOM05D005719 ORTHO05D007030 1.4e-120 437.6 522 47.7
DCAR_014675 Daucus carota HOM05D005719 ORTHO05D007030 2.3e-120 436.8 510 48.0
Lj1g0010479 Lotus japonicus HOM05D005719 ORTHO05D007030 2.3e-120 436.8 524 47.5
Lalb_Chr11g0064791 Lupinus albus HOM05D005719 ORTHO05D007030 2.3e-120 436.8 524 47.5
Psat5g018640 Pisum sativum HOM05D005719 ORTHO05D007030 2.3e-120 436.8 526 47.1
PGR031G2819 Punica granatum HOM05D005719 ORTHO05D007030 2.3e-120 436.8 519 49.5
Cfa013832 Carpinus fangiana HOM05D000446 ORTHO05D000321 3.1e-120 436.4 502 50.2
Lsat_1_v5_gn_7_55820 Lactuca sativa HOM05D005719 ORTHO05D007030 3.1e-120 436.4 528 48.3
Phvul.009G145500 Phaseolus vulgaris HOM05D005719 ORTHO05D007030 3.1e-120 436.4 525 47.2
arahy.Tifrunner.gnm1.ann1.I1WLRD Arachis hypogaea HOM05D005719 ORTHO05D007030 5.2e-120 435.6 524 47.5
CAN.G1751.8 Capsicum annuum HOM05D005719 ORTHO05D007030 5.2e-120 435.6 549 45.7
Glyma.04G090400 Glycine max HOM05D005719 ORTHO05D007030 5.2e-120 435.6 519 47.4
Hund05222 Selenicereus undatus HOM05D005719 ORTHO05D007030 6.8e-120 435.3 524 48.7
TPR.G12418 Trifolium pratense HOM05D005719 ORTHO05D007030 8.9e-120 434.9 526 46.8
FvH4_5g33860 Fragaria vesca HOM05D005719 ORTHO05D007030 2.0e-119 433.7 526 46.0
CANSAT21G2028 Cannabis sativa HOM05D005719 ORTHO05D007030 2.6e-119 433.3 526 46.6
PSO700G0171 Papaver somniferum HOM05D005719 ORTHO05D007030 3.8e-118 429.5 493 45.8
ClCG11G014800 Citrullus lanatus HOM05D005719 ORTHO05D007030 2.4e-117 426.8 524 45.4
Cpa.g.sc177.3 Carica papaya HOM05D005719 ORTHO05D007030 4.1e-117 426.0 437 50.6
PSO761G0268 Papaver somniferum HOM05D005719 ORTHO05D007030 7.1e-117 425.2 482 46.3
SalBow7G1913 Salvia bowleyana HOM05D005719 ORTHO05D007030 9.2e-117 424.9 425 56.0
Sed0009724 Sechium edule HOM05D005719 ORTHO05D007030 9.2e-117 424.9 493 46.9
Nitab4.5_0000681g0030 Nicotiana tabacum HOM05D005719 ORTHO05D007030 1.2e-116 424.5 523 48.4
Ciclev10000979m.g Citrus clementina HOM05D005719 ORTHO05D007030 3.9e-115 419.5 526 46.0
BcaC06g30902 Brassica carinata HOM05D005719 ORTHO05D007030 8.6e-115 418.3 526 45.6
Dinv44886 Davidia involucrata HOM05D005719 ORTHO05D007030 8.6e-115 418.3 425 54.1
Medtr3g111330 Medicago truncatula HOM05D005719 ORTHO05D007030 2.5e-114 416.8 528 44.9
THA.LOC104823811 Tarenaya hassleriana HOM05D005719 ORTHO05D007030 1.2e-113 414.5 527 44.8
CsaV3_3G048210 Cucumis sativus L. HOM05D005719 ORTHO05D007030 2.1e-113 413.7 518 44.8
Sp2g17320 Schrenkiella parvula HOM05D005719 ORTHO05D007030 2.1e-113 413.7 521 45.1
Atru.chr13.942 Acer truncatum HOM05D005719 ORTHO05D007030 8.1e-113 411.8 524 46.0
Duzib041G0544 Durio zibethinus HOM05D005719 ORTHO05D007030 6.9e-112 408.7 521 45.5
COL.COLO4_35322 Corchorus olitorius HOM05D005719 ORTHO05D007030 2.0e-111 407.1 494 49.8
Aa31LG2G4530 Aethionema arabicum HOM05D005719 ORTHO05D007030 2.6e-111 406.8 483 46.8
Thhalv10004086m.g Eutrema salsugineum HOM05D005719 ORTHO05D007030 2.6e-111 406.8 521 44.7
VMungo1309G0989 Vigna mungo HOM05D005719 ORTHO05D007030 4.4e-111 406.0 498 46.4
CAN.G1921.11 Capsicum annuum HOM05D005719 ORTHO05D007030 5.8e-111 405.6 527 44.4
THA.LOC104805699 Tarenaya hassleriana HOM05D005719 ORTHO05D007030 9.9e-111 404.8 527 44.4
FAN08G1402 Fragaria x ananassa HOM05D005719 ORTHO05D007030 2.2e-110 403.7 599 41.1
Carub.0005s0719 Capsella rubella HOM05D005719 ORTHO05D007030 6.4e-110 402.1 523 43.6
AL5G18300 Arabidopsis lyrata HOM05D005719 ORTHO05D007030 7.1e-109 398.7 526 43.5
TPR.G21947 Trifolium pratense HOM05D005719 ORTHO05D007030 3.5e-108 396.4 499 45.9
CARHR286650 Cardamine hirsuta HOM05D005719 ORTHO05D007030 1.3e-107 394.4 524 44.3
C07p37630 Brassica napus HOM05D005719 ORTHO05D007030 1.5e-106 391.0 525 44.0
MBI16_g44752_MAGBIO Magnolia biondii HOM05D005719 ORTHO05D007030 1.5e-106 391.0 441 49.0
AUR62035419 Chenopodium quinoa HOM05D005719 ORTHO05D007030 1.9e-106 390.6 571 43.1
BcaC06g33632 Brassica carinata HOM05D005719 ORTHO05D007030 3.3e-106 389.8 525 43.8
FAN18G0583 Fragaria x ananassa HOM05D005719 ORTHO05D007030 5.6e-106 389.0 457 46.2
AT3G28670 Arabidopsis thaliana HOM05D005719 ORTHO05D007030 9.6e-106 388.3 527 42.5
BolC7t44279H Brassica oleracea HOM05D005719 ORTHO05D007030 3.6e-105 386.3 526 43.9
A06p40410 Brassica napus HOM05D005719 ORTHO05D007030 1.4e-104 384.4 529 43.5
BraA06t26959Z Brassica rapa HOM05D005719 ORTHO05D007030 1.4e-104 384.4 529 43.5
PGSC0003DMG400019103 Solanum tuberosum HOM05D005719 ORTHO05D007030 6.9e-104 382.1 522 44.3
Rhsim07G0214600 Rhododendron simsii HOM05D005719 ORTHO05D007030 4.9e-102 375.9 392 51.8
Peaxi162Scf01397g00011 Petunia axillaris HOM05D005719 ORTHO05D007030 4.2e-101 372.9 394 50.5
Manes.05G187400 Manihot esculenta HOM05D005719 ORTHO05D007030 6.7e-99 365.5 399 49.1
Nn1g05685 Nelumbo nucifera HOM05D005719 ORTHO05D007030 1.4e-96 357.8 527 42.1
HPP92_028121 Vanilla planifolia HOM05D005719 ORTHO05D007030 2.2e-94 350.5 494 42.7
Ca_15541_v3 Cicer arietinum L. HOM05D005719 ORTHO05D007030 6.4e-94 349.0 525 41.7
HPP92_020868 Vanilla planifolia HOM05D005719 ORTHO05D007030 5.5e-93 345.9 521 40.5
MELO3C003498.2 Cucumis melo HOM05D005719 ORTHO05D007030 1.1e-90 338.2 361 48.8
Ah.00g000110 Amaranthus hybridus HOM05D005719 ORTHO05D007030 1.6e-89 334.3 407 45.9
CDE07G0720 Ceratophyllum demersum HOM05D005719 ORTHO05D007030 1.2e-84 318.2 522 38.1
Os08g0101400 Oryza sativa ssp. japonica HOM05D005719 ORTHO05D007030 5.3e-80 302.8 516 37.6
Actinidia29649 Actinidia chinensis HOM05D005719 ORTHO05D007030 1.5e-79 301.2 390 44.4
PGSC0003DMG400019007 Solanum tuberosum HOM05D005719 ORTHO05D007030 1.6e-76 291.2 523 38.0
Potri.002G108700 Populus trichocarpa HOM05D005719 ORTHO05D007030 8.7e-75 285.4 282 55.0
Mapoly0053s0027 Marchantia polymorpha HOM05D005719 ORTHO05D007030 1.4e-64 251.5 457 36.8
Pp3c26_6510 Physcomitrium patens HOM05D005719 ORTHO05D007030 2.4e-56 224.2 469 33.3
Lju279A4T8 Lonicera japonica HOM05D005719 ORTHO05D007030 1.4e-51 208.4 185 57.3
TAR381G1016 Trochodendron aralioides HOM05D005719 ORTHO05D007030 6.7e-51 206.1 218 52.8
AUR62035705 Chenopodium quinoa HOM05D005719 ORTHO05D007030 1.2e-50 205.3 287 41.5
Os10g0188900 Oryza sativa ssp. japonica HOM05D005719 ORTHO05D007030 3.7e-49 200.3 307 40.7
TAR381G0292 Trochodendron aralioides HOM05D005719 ORTHO05D007030 5.5e-45 186.4 238 45.0
SMO118G0237 Selaginella moellendorffii HOM05D005719 ORTHO05D007030 7.2e-45 186.0 517 31.7
Zm00001eb198670 Zea mays HOM05D005719 ORTHO05D007030 2.6e-42 177.6 309 38.5
AUR62035707 Chenopodium quinoa HOM05D005719 ORTHO05D007030 1.3e-41 175.3 151 59.6
Oeu035375.1 Olea europaea HOM05D005719 ORTHO05D007030 8.6e-38 162.5 168 52.4
HanXRQChr16g0499811 Helianthus annuus HOM05D005719 ORTHO05D007030 1.8e-35 154.8 380 32.6
Duzib116G0315 Durio zibethinus HOM05D005719 ORTHO05D007030 2.0e-34 151.4 167 49.1
BcaB04g19478 Brassica carinata HOM05D005719 ORTHO05D007030 1.3e-33 148.7 286 37.8
Lju170A15T23 Lonicera japonica HOM05D005719 ORTHO05D007030 2.2e-33 147.9 121 62.8
AagrBONN_evm.TU.Sc2ySwM_369.438 Anthoceros agrestis HOM05D005719 ORTHO05D007030 3.7e-33 147.1 293 32.1
ATR0144G003 Amborella trichopoda HOM05D005719 ORTHO05D007030 4.5e-31 140.2 244 38.5
CBR_g38241 Chara braunii HOM05D005719 ORTHO05D007030 6.1e-28 129.8 426 25.6
ATR0800G070 Amborella trichopoda HOM05D005719 ORTHO05D007030 8.0e-28 129.4 149 49.0
Hund16029 Selenicereus undatus HOM05D005719 ORTHO05D007030 1.7e-25 121.7 260 34.6
SEGI_36882 Sequoiadendron giganteum HOM05D005719 ORTHO05D007030 3.7e-25 120.6 155 46.5
Lju170A15T24 Lonicera japonica HOM05D005719 ORTHO05D007030 3.3e-21 107.5 109 52.3
Peaxi162Scf01397g00010 Petunia axillaris HOM05D005719 ORTHO05D007030 1.6e-20 105.1 135 47.4
COL.COLO4_23153 Corchorus olitorius HOM05D005719 ORTHO05D007030 9.2e-16 89.4 134 43.3
SEGI_23985 Sequoiadendron giganteum HOM05D005719 ORTHO05D007030 3.6e-12 77.4 126 34.1
Lju279C4T1 Lonicera japonica HOM05D005719 ORTHO05D007030 4.4e-10 70.5 109 40.4
Cre12.g551000 Chlamydomonas reinhardtii HOM05D005719 ORTHO05D007030 9.9e-10 69.3 434 21.4


User provided reference genes

Program Settings