Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold14G07039 Striga asiatica HOM05D004525 ORTHO05D005295 5.1e-97 357.8 193 100.0
SGA_v2.0_scaffold36G14274 Striga asiatica HOM05D004525 ORTHO05D005295 5.1e-97 357.8 193 100.0
SalBow6G4763 Salvia bowleyana HOM05D004525 ORTHO05D005295 1.5e-80 303.1 199 82.4
MSTRG.12201 Avicennia marina HOM05D004525 ORTHO05D005295 2.4e-78 295.8 198 82.3
Migut.E00628 Erythranthe guttata HOM05D004525 ORTHO05D005295 6.9e-78 294.3 185 82.2
MSTRG.24865 Avicennia marina HOM05D004525 ORTHO05D005295 2.9e-76 288.9 202 78.7
unitig_744.g24303 Utricularia gibba HOM05D004525 ORTHO05D005295 1.0e-73 280.4 192 78.6
Thecc.03G220900 Theobroma cacao HOM05D004525 ORTHO05D005295 7.4e-72 274.2 199 74.4
Lsat_1_v5_gn_3_14420 Lactuca sativa HOM05D004525 ORTHO05D005295 2.8e-71 272.3 197 72.1
MD06G1119500 Malus domestica HOM05D004525 ORTHO05D005295 3.7e-71 271.9 198 72.7
Nitab4.5_0001367g0040 Nicotiana tabacum HOM05D004525 ORTHO05D005295 4.8e-71 271.6 197 75.1
Duzib068G1021 Durio zibethinus HOM05D004525 ORTHO05D005295 6.3e-71 271.2 199 73.4
Duzib205G1187 Durio zibethinus HOM05D004525 ORTHO05D005295 8.2e-71 270.8 189 74.6
Gohir.A12G240200 Gossypium hirsutum HOM05D004525 ORTHO05D005295 1.1e-70 270.4 199 72.9
QL02p027997 Quercus lobata HOM05D004525 ORTHO05D005295 1.8e-70 269.6 198 71.7
Cc08_g16770 Coffea canephora HOM05D004525 ORTHO05D005295 2.4e-70 269.2 159 84.3
Gohir.D12G241500 Gossypium hirsutum HOM05D004525 ORTHO05D005295 2.4e-70 269.2 199 72.9
Gorai.008G258800 Gossypium raimondii HOM05D004525 ORTHO05D005295 2.4e-70 269.2 199 72.9
QL12p036922 Quercus lobata HOM05D004525 ORTHO05D005295 2.4e-70 269.2 198 71.7
GSVIVG01019654001 Vitis vinifera HOM05D004525 ORTHO05D005295 2.4e-70 269.2 195 74.4
MD14G1136300 Malus domestica HOM05D004525 ORTHO05D005295 3.1e-70 268.9 199 72.4
HanXRQChr17g0534221 Helianthus annuus HOM05D004525 ORTHO05D005295 4.1e-70 268.5 193 74.6
Cpa.g.sc27.182 Carica papaya HOM05D004525 ORTHO05D005295 6.9e-70 267.7 199 70.9
COL.COLO4_10799 Corchorus olitorius HOM05D004525 ORTHO05D005295 6.9e-70 267.7 197 73.6
PGSC0003DMG400029951 Solanum tuberosum HOM05D004525 ORTHO05D005295 6.9e-70 267.7 202 75.2
Ciclev10022441m.g Citrus clementina HOM05D004525 ORTHO05D005295 9.1e-70 267.3 187 74.9
Solyc08g065160.3 Solanum lycopersicum HOM05D004525 ORTHO05D005295 9.1e-70 267.3 202 74.8
Sopen08g018760 Solanum pennellii HOM05D004525 ORTHO05D005295 9.1e-70 267.3 202 74.8
Dinv38179 Davidia involucrata HOM05D004525 ORTHO05D005295 1.2e-69 266.9 159 83.6
Nitab4.5_0012632g0010 Nicotiana tabacum HOM05D004525 ORTHO05D005295 2.0e-69 266.2 197 74.1
Potri.001G083801 Populus trichocarpa HOM05D004525 ORTHO05D005295 2.0e-69 266.2 199 71.9
CiPaw.11G112000 Carya illinoinensis HOM05D004525 ORTHO05D005295 2.6e-69 265.8 200 73.0
FvH4_4g11450 Fragaria vesca HOM05D004525 ORTHO05D005295 2.6e-69 265.8 199 70.4
Prupe.2G307200 Prunus persica HOM05D004525 ORTHO05D005295 3.4e-69 265.4 194 72.7
FAN07G0034 Fragaria x ananassa HOM05D004525 ORTHO05D005295 5.9e-69 264.6 199 70.4
CSS0029651 Camellia sinensis var. sinensis HOM05D004525 ORTHO05D005295 7.7e-69 264.2 193 72.5
Cfa011920 Carpinus fangiana HOM05D004525 ORTHO05D005295 7.7e-69 264.2 194 73.2
Haze_04010 Corylus avellana HOM05D004525 ORTHO05D005295 7.7e-69 264.2 193 73.1
Manes.09G101000 Manihot esculenta HOM05D004525 ORTHO05D005295 7.7e-69 264.2 193 72.5
Cfa006748 Carpinus fangiana HOM05D004525 ORTHO05D005295 1.3e-68 263.5 193 72.5
CiPaw.12G077100 Carya illinoinensis HOM05D004525 ORTHO05D005295 1.3e-68 263.5 199 70.9
Actinidia22207 Actinidia chinensis HOM05D004525 ORTHO05D005295 1.7e-68 263.1 193 72.0
Prupe.5G130000 Prunus persica HOM05D004525 ORTHO05D005295 5.0e-68 261.5 197 70.6
CSS0049671 Camellia sinensis var. sinensis HOM05D004525 ORTHO05D005295 6.5e-68 261.2 193 72.0
Sabra01G0060700 Salix brachista HOM05D004525 ORTHO05D005295 6.5e-68 261.2 195 71.3
RcHm_v2.0_Chr1g0332661 Rosa chinensis HOM05D004525 ORTHO05D005295 8.5e-68 260.8 199 69.8
Atru.chr9.1879 Acer truncatum HOM05D004525 ORTHO05D005295 1.4e-67 260.0 193 72.0
CSS0036474 Camellia sinensis var. sinensis HOM05D004525 ORTHO05D005295 1.9e-67 259.6 193 71.5
THA.LOC104809303 Tarenaya hassleriana HOM05D004525 ORTHO05D005295 1.9e-67 259.6 195 70.3
Hma1.2p1_0456F.1_g156630 Hydrangea macrophylla HOM05D004525 ORTHO05D005295 2.5e-67 259.2 155 84.5
RcHm_v2.0_Chr6g0273561 Rosa chinensis HOM05D004525 ORTHO05D005295 2.5e-67 259.2 186 71.5
TWI56G0194 Tripterygium wilfordii HOM05D004525 ORTHO05D005295 2.5e-67 259.2 199 69.3
Nn3g18812 Nelumbo nucifera HOM05D004525 ORTHO05D005295 5.5e-67 258.1 174 75.9
ECA246G3328 Erigeron canadensis HOM05D004525 ORTHO05D005295 7.2e-67 257.7 158 81.0
FAN22G0758 Fragaria x ananassa HOM05D004525 ORTHO05D005295 1.2e-66 256.9 185 71.9
Potri.003G146900 Populus trichocarpa HOM05D004525 ORTHO05D005295 1.2e-66 256.9 194 71.1
TAR629G2664 Trochodendron aralioides HOM05D004525 ORTHO05D005295 3.6e-66 255.4 191 73.3
Sabra03G0106900 Salix brachista HOM05D004525 ORTHO05D005295 4.7e-66 255.0 194 70.1
Eucgr.C04229 Eucalyptus grandis HOM05D004525 ORTHO05D005295 6.1e-66 254.6 189 70.4
TWI36G0523 Tripterygium wilfordii HOM05D004525 ORTHO05D005295 7.9e-66 254.2 182 72.0
ClCG10G000810 Citrullus lanatus HOM05D004525 ORTHO05D005295 1.8e-65 253.1 191 72.3
PGR031G2275 Punica granatum HOM05D004525 ORTHO05D005295 1.8e-65 253.1 185 71.9
MBI04_g25309_MAGBIO Magnolia biondii HOM05D004525 ORTHO05D005295 6.7e-65 251.1 191 70.2
unitig_21.g20890 Utricularia gibba HOM05D004525 ORTHO05D005295 6.7e-65 251.1 193 72.0
DCAR_011870 Daucus carota HOM05D004525 ORTHO05D005295 8.8e-65 250.8 193 68.9
Oeu022035.1 Olea europaea HOM05D004525 ORTHO05D005295 8.8e-65 250.8 250 60.4
Thhalv10008848m.g Eutrema salsugineum HOM05D004525 ORTHO05D005295 1.5e-64 250.0 192 68.8
DCAR_006547 Daucus carota HOM05D004525 ORTHO05D005295 2.6e-64 249.2 163 76.7
CsaV3_3G000870 Cucumis sativus L. HOM05D004525 ORTHO05D005295 4.4e-64 248.4 193 70.5
AT1G26665 Arabidopsis thaliana HOM05D004525 ORTHO05D005295 5.7e-64 248.1 192 67.7
EL10Ac5g12425 Beta vulgaris HOM05D004525 ORTHO05D005295 5.7e-64 248.1 196 68.4
Ca_02991_v3 Cicer arietinum L. HOM05D004525 ORTHO05D005295 5.7e-64 248.1 192 69.3
AL1G39060 Arabidopsis lyrata HOM05D004525 ORTHO05D005295 7.4e-64 247.7 186 70.4
Sc01g0010720 Simmondsia chinensis HOM05D004525 ORTHO05D005295 7.4e-64 247.7 187 68.4
vmacro11499 Vaccinium macrocarpon HOM05D004525 ORTHO05D005295 1.7e-63 246.5 171 74.9
Ca_17957_v3 Cicer arietinum L. HOM05D004525 ORTHO05D005295 2.2e-63 246.1 192 68.8
Sed0024458 Sechium edule HOM05D004525 ORTHO05D005295 4.8e-63 245.0 191 68.6
Rhsim07G0078000 Rhododendron simsii HOM05D004525 ORTHO05D005295 8.2e-63 244.2 200 67.5
Aqoxy5G04330 Aquilegia oxysepala HOM05D004525 ORTHO05D005295 2.4e-62 242.7 190 69.5
Hund11348 Selenicereus undatus HOM05D004525 ORTHO05D005295 3.1e-62 242.3 156 76.9
Aqoxy3G00526 Aquilegia oxysepala HOM05D004525 ORTHO05D005295 5.3e-62 241.5 190 68.9
VMungo0251G0643 Vigna mungo HOM05D004525 ORTHO05D005295 7.0e-62 241.1 199 65.8
ATR0620G086 Amborella trichopoda HOM05D004525 ORTHO05D005295 1.2e-61 240.4 168 74.4
A07p13030 Brassica napus HOM05D001252 ORTHO05D005295 1.5e-61 240.0 178 70.8
Haze_09177 Corylus avellana HOM05D004525 ORTHO05D005295 1.5e-61 240.0 181 71.3
PSO478G2085 Papaver somniferum HOM05D004525 ORTHO05D005295 2.6e-61 239.2 193 66.3
Glyma.08G296500 Glycine max HOM05D004525 ORTHO05D005295 3.5e-61 238.8 198 66.7
PSO017G1681 Papaver somniferum HOM05D004525 ORTHO05D005295 3.5e-61 238.8 193 66.3
Sp1g22150 Schrenkiella parvula HOM05D004525 ORTHO05D005295 3.5e-61 238.8 193 65.3
Lj8A200T57 Lonicera japonica HOM05D004525 ORTHO05D005295 5.9e-61 238.0 153 79.1
Zm00001eb319380 Zea mays HOM05D004525 ORTHO05D005295 5.9e-61 238.0 189 69.3
Lalb_Chr13g0294931 Lupinus albus HOM05D004525 ORTHO05D005295 7.7e-61 237.7 192 67.2
HPP92_025871 Vanilla planifolia HOM05D004525 ORTHO05D005295 1.3e-60 236.9 193 65.8
Zm00001eb103320 Zea mays HOM05D004525 ORTHO05D005295 1.3e-60 236.9 183 69.4
Ah.12g053230 Amaranthus hybridus HOM05D004525 ORTHO05D005295 1.7e-60 236.5 158 74.1
BcaC06g35131 Brassica carinata HOM05D004525 ORTHO05D005295 1.7e-60 236.5 193 67.4
CARHR212640 Cardamine hirsuta HOM05D004525 ORTHO05D005295 1.7e-60 236.5 178 69.7
BraA07t29074Z Brassica rapa HOM05D001252 ORTHO05D005295 2.2e-60 236.1 191 67.0
Phvul.003G069600 Phaseolus vulgaris HOM05D004525 ORTHO05D005295 2.2e-60 236.1 198 64.1
vmacro13851 Vaccinium macrocarpon HOM05D004525 ORTHO05D005295 2.9e-60 235.7 187 69.5
BcaB03g14082 Brassica carinata HOM05D004525 ORTHO05D005295 5.0e-60 235.0 193 64.8
C07p19480 Brassica napus HOM05D001252 ORTHO05D005295 5.0e-60 235.0 193 66.8
Lalb_Chr12g0205381 Lupinus albus HOM05D004525 ORTHO05D005295 5.0e-60 235.0 189 65.6
Medtr8g085570 Medicago truncatula HOM05D004525 ORTHO05D005295 6.5e-60 234.6 192 65.6
AL7G47302 Arabidopsis lyrata HOM05D004525 ORTHO05D005295 1.1e-59 233.8 166 73.5
Aa31LG9G260 Aethionema arabicum HOM05D004525 ORTHO05D005295 1.5e-59 233.4 209 62.7
CARHR025300 Cardamine hirsuta HOM05D004525 ORTHO05D005295 1.9e-59 233.0 187 67.9
AUR62007057 Chenopodium quinoa HOM05D004525 ORTHO05D005295 1.9e-59 233.0 193 64.8
Glyma.18G125700 Glycine max HOM05D004525 ORTHO05D005295 3.2e-59 232.3 192 66.7
AT5G41910 Arabidopsis thaliana HOM05D004525 ORTHO05D005295 5.5e-59 231.5 164 72.6
Os09g0528300 Oryza sativa ssp. japonica HOM05D004525 ORTHO05D005295 5.5e-59 231.5 156 75.0
TPR.G15828 Trifolium pratense HOM05D004525 ORTHO05D005295 5.5e-59 231.5 192 67.2
Carub.0001s2436 Capsella rubella HOM05D004525 ORTHO05D005295 8.0e-58 227.6 186 63.4
Psat7g073160 Pisum sativum HOM05D004525 ORTHO05D005295 1.4e-57 226.9 192 63.5
Peaxi162Scf01444g00013 Petunia axillaris HOM05D004525 ORTHO05D005295 5.2e-57 224.9 183 69.4
Lj4g0018067 Lotus japonicus HOM05D004525 ORTHO05D005295 3.3e-56 222.2 193 63.7
CANSAT56G2042 Cannabis sativa HOM05D004525 ORTHO05D005295 5.7e-56 221.5 209 61.2
CDE07G1557 Ceratophyllum demersum HOM05D004525 ORTHO05D005295 9.7e-56 220.7 165 68.5
Atru.chr3.1913 Acer truncatum HOM05D004525 ORTHO05D005295 6.3e-55 218.0 169 69.2
TPR.G11962 Trifolium pratense HOM05D004525 ORTHO05D005295 1.1e-54 217.2 192 64.6
FAN17G2704 Fragaria x ananassa HOM05D004525 ORTHO05D005295 7.0e-54 214.5 201 62.2
Psat7g073280 Pisum sativum HOM05D004525 ORTHO05D005295 9.1e-54 214.2 170 67.6
BraA09t39504Z Brassica rapa HOM05D004525 ORTHO05D005295 1.3e-52 210.3 182 63.2
BolC7t42467H Brassica oleracea HOM05D001252 ORTHO05D001661 1.5e-51 206.8 169 66.9
Lj4g0019040 Lotus japonicus HOM05D004525 ORTHO05D005295 2.3e-49 199.5 176 63.1
FAN08G2166 Fragaria x ananassa HOM05D000319 ORTHO05D035382 5.2e-49 198.4 157 64.3
C05p24330 Brassica napus HOM05D004525 ORTHO05D005295 4.1e-46 188.7 153 66.7
arahy.Tifrunner.gnm1.ann1.0LH6ZS Arachis hypogaea HOM05D004525 ORTHO05D005295 1.6e-45 186.8 191 57.1
arahy.Tifrunner.gnm1.ann1.DJD4V2 Arachis hypogaea HOM05D004525 ORTHO05D005295 4.5e-45 185.3 191 56.5
Psat7g072880 Pisum sativum HOM05D004525 ORTHO05D005295 4.5e-45 185.3 147 64.6
Psat7g074000 Pisum sativum HOM05D004525 ORTHO05D005295 7.7e-45 184.5 184 56.5
Peaxi162Scf00640g00032 Petunia axillaris HOM05D004525 ORTHO05D005295 1.3e-44 183.7 131 72.5
Nitab4.5_0017193g0030 Nicotiana tabacum HOM05D004525 ORTHO05D005295 1.5e-43 180.3 190 58.9
Cfa007058 Carpinus fangiana HOM05D004525 ORTHO05D005295 4.7e-42 175.3 139 68.3
TAR375G0036 Trochodendron aralioides HOM05D004525 ORTHO05D005295 6.1e-42 174.9 106 82.1
MELO3C013773.2 Cucumis melo HOM05D004525 ORTHO05D005295 1.8e-41 173.3 236 49.2
AUR62019920 Chenopodium quinoa HOM05D004525 ORTHO05D005295 2.3e-41 172.9 111 73.0
PGSC0003DMG400039131 Solanum tuberosum HOM05D004525 ORTHO05D005295 3.7e-39 165.6 130 66.9
Actinidia27285 Actinidia chinensis HOM05D004525 ORTHO05D005295 6.3e-39 164.9 192 50.5
FvH4_5g19692 Fragaria vesca HOM05D004525 ORTHO05D005295 1.2e-37 160.6 159 56.0
Pp3c11_16910 Physcomitrium patens HOM05D004525 ORTHO05D005295 2.0e-37 159.8 144 52.1
Mapoly0151s0039 Marchantia polymorpha HOM05D004525 ORTHO05D005295 2.7e-37 159.5 171 48.5
PGSC0003DMG400040735 Solanum tuberosum HOM05D004525 ORTHO05D005295 2.9e-36 156.0 131 65.6
PGSC0003DMG400043501 Solanum tuberosum HOM05D004525 ORTHO05D005295 3.8e-36 155.6 131 64.1
PGSC0003DMG400008601 Solanum tuberosum HOM05D004525 ORTHO05D005295 5.0e-36 155.2 131 65.6
PGSC0003DMG400017120 Solanum tuberosum HOM05D004525 ORTHO05D005295 9.5e-35 151.0 131 65.6
CAN.G6.3 Capsicum annuum HOM05D004525 ORTHO05D005295 3.0e-33 146.0 82 85.4
BcaC05g26400 Brassica carinata HOM05D004525 ORTHO05D005295 1.5e-32 143.7 91 72.5
SMO301G0053 Selaginella moellendorffii HOM05D004525 ORTHO05D005295 1.5e-32 143.7 154 48.7
A09p40080 Brassica napus HOM05D004525 ORTHO05D005295 3.7e-31 139.0 120 62.5
AagrBONN_evm.TU.Sc2ySwM_117.1849 Anthoceros agrestis HOM05D004525 ORTHO05D005295 6.3e-31 138.3 144 45.8
AagrBONN_evm.TU.Sc2ySwM_368.381 Anthoceros agrestis HOM05D004525 ORTHO05D005295 1.1e-30 137.5 140 45.7
SEGI_32557 Sequoiadendron giganteum HOM05D004525 ORTHO05D005295 5.4e-30 135.2 154 50.0
Nitab4.5_0002724g0080 Nicotiana tabacum HOM05D004525 ORTHO05D005295 1.3e-28 130.6 117 64.1
CAN.G1631.10 Capsicum annuum HOM05D004525 ORTHO05D005295 5.0e-20 102.1 87 65.5
SGA_v2.0_scaffold104G30259 Striga asiatica HOM05D004525 ORTHO05D005295 2.5e-19 99.8 172 48.3
RcHm_v2.0_Chr7g0187021 Rosa chinensis HOM05D004525 ORTHO05D005295 7.3e-19 98.2 187 36.9
RcHm_v2.0_Chr5g0055281 Rosa chinensis HOM05D004525 ORTHO05D005295 2.9e-15 86.3 59 66.1
TAR374G0495 Trochodendron aralioides HOM05D004525 ORTHO05D005295 7.3e-11 71.6 103 50.5
BcaB05g21931 Brassica carinata HOM05D004525 ORTHO05D005295 2.2e-07 60.1 75 52.0


User provided reference genes

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