Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold14G07036 Striga asiatica HOM05D004504 ORTHO05D005324 2.6e-125 452.2 250 100.0
Prupe.1G437500 Prunus persica HOM05D004504 ORTHO05D005324 9.7e-40 167.9 274 43.4
QL02p005285 Quercus lobata HOM05D004504 ORTHO05D005324 9.7e-40 167.9 227 47.1
Cfa018531 Carpinus fangiana HOM05D004504 ORTHO05D005324 1.3e-39 167.5 227 48.0
Duzib093G0589 Durio zibethinus HOM05D004504 ORTHO05D005324 1.7e-39 167.2 247 46.2
Haze_17534 Corylus avellana HOM05D004504 ORTHO05D005324 2.2e-39 166.8 222 50.5
Haze_17537 Corylus avellana HOM05D004504 ORTHO05D005324 2.2e-39 166.8 222 50.5
FAN15G1553 Fragaria x ananassa HOM05D004504 ORTHO05D005324 2.2e-39 166.8 246 48.4
RcHm_v2.0_Chr6g0307761 Rosa chinensis HOM05D004504 ORTHO05D005324 3.7e-39 166.0 244 46.3
Hma1.2p1_0982F.1_g243930 Hydrangea macrophylla HOM05D004504 ORTHO05D005324 8.2e-39 164.9 216 49.1
Oeu029881.1 Olea europaea HOM05D004504 ORTHO05D005324 1.1e-38 164.5 217 50.7
MSTRG.22265 Avicennia marina HOM05D004504 ORTHO05D005324 1.4e-38 164.1 247 47.0
Hma1.2p1_0718F.1_g208360 Hydrangea macrophylla HOM05D004504 ORTHO05D005324 1.8e-38 163.7 213 47.9
ClCG05G019780 Citrullus lanatus HOM05D004504 ORTHO05D005324 2.4e-38 163.3 217 48.8
CiPaw.15G061000 Carya illinoinensis HOM05D004504 ORTHO05D005324 3.1e-38 162.9 228 48.7
TAR381G0791 Trochodendron aralioides HOM05D004504 ORTHO05D005324 3.1e-38 162.9 220 48.6
FAN20G0303 Fragaria x ananassa HOM05D004504 ORTHO05D005324 5.3e-38 162.2 246 47.6
FvH4_2g34560 Fragaria vesca HOM05D004504 ORTHO05D005324 9.1e-38 161.4 245 46.5
Sed0018137 Sechium edule HOM05D004504 ORTHO05D005324 1.2e-37 161.0 215 48.4
Thecc.08G010300 Theobroma cacao HOM05D004504 ORTHO05D005324 1.2e-37 161.0 246 45.1
MELO3C016744.2 Cucumis melo HOM05D004504 ORTHO05D005324 2.0e-37 160.2 223 47.5
FAN27G0025 Fragaria x ananassa HOM05D004504 ORTHO05D005324 4.5e-37 159.1 245 47.3
Manes.05G172300 Manihot esculenta HOM05D004504 ORTHO05D005324 4.5e-37 159.1 227 48.5
TAR625G1455 Trochodendron aralioides HOM05D004504 ORTHO05D005324 1.3e-36 157.5 221 47.1
CsaV3_4G034230 Cucumis sativus L. HOM05D004504 ORTHO05D005324 2.2e-36 156.8 225 48.0
MSTRG.24329 Avicennia marina HOM05D004504 ORTHO05D005324 2.9e-36 156.4 239 46.9
Duzib116G0149 Durio zibethinus HOM05D004504 ORTHO05D005324 8.5e-36 154.8 246 43.5
COL.COLO4_26483 Corchorus olitorius HOM05D004504 ORTHO05D005324 1.6e-34 150.6 242 45.0
Gohir.A05G201800 Gossypium hirsutum HOM05D004504 ORTHO05D005324 6.1e-34 148.7 245 43.7
Lsat_1_v5_gn_6_114061 Lactuca sativa HOM05D004504 ORTHO05D005324 6.1e-34 148.7 255 42.0
Solyc04g079110.1 Solanum lycopersicum HOM05D004504 ORTHO05D005324 7.9e-34 148.3 234 42.3
MBI06_g24649_MAGBIO Magnolia biondii HOM05D004504 ORTHO05D005324 1.4e-33 147.5 237 42.2
Sopen04g032720 Solanum pennellii HOM05D004504 ORTHO05D005324 3.0e-33 146.4 246 40.2
Potri.014G031100 Populus trichocarpa HOM05D004504 ORTHO05D005324 3.9e-33 146.0 237 44.3
Gohir.D05G204900 Gossypium hirsutum HOM05D004504 ORTHO05D005324 5.2e-33 145.6 245 43.3
PGSC0003DMG400008020 Solanum tuberosum HOM05D004504 ORTHO05D005324 6.7e-33 145.2 243 43.2
Sabra02G0099600 Salix brachista HOM05D004504 ORTHO05D005324 8.8e-33 144.8 225 45.3
Ciclev10001740m.g Citrus clementina HOM05D004504 ORTHO05D005324 2.0e-32 143.7 258 45.3
Nitab4.5_0001580g0010 Nicotiana tabacum HOM05D004504 ORTHO05D005324 2.0e-32 143.7 241 41.5
Potri.002G127100 Populus trichocarpa HOM05D004504 ORTHO05D005324 3.3e-32 142.9 267 43.1
TWI36G0121 Tripterygium wilfordii HOM05D004504 ORTHO05D005324 4.4e-32 142.5 227 45.8
Migut.N02706 Erythranthe guttata HOM05D004504 ORTHO05D005324 7.4e-32 141.7 245 43.7
Gorai.009G211200 Gossypium raimondii HOM05D004504 ORTHO05D005324 9.7e-32 141.4 245 42.4
Cpa.g.sc49.5 Carica papaya HOM05D004504 ORTHO05D005324 1.7e-31 140.6 223 43.5
Gohir.D01G107300 Gossypium hirsutum HOM05D004504 ORTHO05D005324 1.7e-31 140.6 221 43.9
Glyma.06G039100 Glycine max HOM05D004504 ORTHO05D005324 2.2e-31 140.2 231 43.3
MD08G1102600 Malus domestica HOM05D004504 ORTHO05D005324 2.2e-31 140.2 213 45.5
TWI36G0477 Tripterygium wilfordii HOM05D004504 ORTHO05D005324 2.2e-31 140.2 226 44.2
Gorai.002G131700 Gossypium raimondii HOM05D004504 ORTHO05D005324 2.8e-31 139.8 221 43.4
CiPaw.16G045400 Carya illinoinensis HOM05D004504 ORTHO05D005324 3.7e-31 139.4 227 43.2
Manes.18G035600 Manihot esculenta HOM05D004504 ORTHO05D005324 3.7e-31 139.4 237 43.5
Gohir.A01G119100 Gossypium hirsutum HOM05D004504 ORTHO05D005324 4.8e-31 139.0 221 43.0
Aqoxy5G01252 Aquilegia oxysepala HOM05D004504 ORTHO05D005324 6.3e-31 138.7 220 42.3
CsaV3_2G027990 Cucumis sativus L. HOM05D004504 ORTHO05D005324 6.3e-31 138.7 222 44.6
HanXRQChr09g0267891 Helianthus annuus HOM05D004504 ORTHO05D005324 1.1e-30 137.9 261 37.9
MD15G1084100 Malus domestica HOM05D004504 ORTHO05D005324 1.8e-30 137.1 212 46.7
Phvul.009G064300 Phaseolus vulgaris HOM05D004504 ORTHO05D005324 1.8e-30 137.1 231 42.9
VMungo0647G0958 Vigna mungo HOM05D004504 ORTHO05D005324 1.8e-30 137.1 225 41.8
Sabra14G0022100 Salix brachista HOM05D004504 ORTHO05D005324 3.1e-30 136.3 241 41.5
Sed0027328 Sechium edule HOM05D004504 ORTHO05D005324 3.1e-30 136.3 208 46.6
ClCG08G015770 Citrullus lanatus HOM05D004504 ORTHO05D005324 7.0e-30 135.2 222 44.1
Lj1g0007502 Lotus japonicus HOM05D004504 ORTHO05D005324 1.2e-29 134.4 211 43.1
Sed0026223 Sechium edule HOM05D004504 ORTHO05D005324 1.6e-29 134.0 210 43.3
Glyma.04G038100 Glycine max HOM05D004504 ORTHO05D005324 2.6e-29 133.3 231 42.0
Cc10_g04260 Coffea canephora HOM05D004504 ORTHO05D005324 3.5e-29 132.9 259 41.3
VMungo1309G0174 Vigna mungo HOM05D004504 ORTHO05D005324 3.5e-29 132.9 231 42.9
SalBow7G1688 Salvia bowleyana HOM05D004504 ORTHO05D005324 4.5e-29 132.5 236 41.1
MSTRG.1340 Avicennia marina HOM05D004504 ORTHO05D005324 5.9e-29 132.1 229 43.7
Peaxi162Scf00064g00008 Petunia axillaris HOM05D004504 ORTHO05D005324 5.9e-29 132.1 220 43.2
Lsat_1_v5_gn_4_125561 Lactuca sativa HOM05D004504 ORTHO05D005324 1.3e-28 131.0 259 36.7
Actinidia23268 Actinidia chinensis HOM05D001164 ORTHO05D001031 2.9e-28 129.8 201 45.3
CAN.G1422.9 Capsicum annuum HOM05D000541 ORTHO05D000137 1.5e-27 127.5 249 38.6
MELO3C010878.2 Cucumis melo HOM05D004504 ORTHO05D005324 1.5e-27 127.5 197 46.2
DCAR_012769 Daucus carota HOM05D004504 ORTHO05D005324 2.5e-27 126.7 238 42.4
Duzib041G0178 Durio zibethinus HOM05D004504 ORTHO05D005324 4.2e-27 125.9 244 38.9
MBI02_g02958_MAGBIO Magnolia biondii HOM05D004504 ORTHO05D005324 5.5e-27 125.6 215 42.3
MBI02_g17324_MAGBIO Magnolia biondii HOM05D004504 ORTHO05D005324 5.5e-27 125.6 215 42.3
Glyma.14G082300 Glycine max HOM05D004504 ORTHO05D005324 7.2e-27 125.2 231 39.8
HanXRQChr16g0507531 Helianthus annuus HOM05D004504 ORTHO05D005324 7.2e-27 125.2 246 39.4
Phvul.001G021300 Phaseolus vulgaris HOM05D004504 ORTHO05D005324 1.2e-26 124.4 222 40.5
Lalb_Chr23g0267021 Lupinus albus HOM05D004504 ORTHO05D005324 1.4e-25 120.9 217 40.1
Sopen12g030760 Solanum pennellii HOM05D004504 ORTHO05D005324 1.4e-25 120.9 229 41.9
PGSC0003DMG400015442 Solanum tuberosum HOM05D004504 ORTHO05D005324 1.4e-25 120.9 224 42.0
Dinv39324 Davidia involucrata HOM05D004504 ORTHO05D005324 3.0e-25 119.8 150 49.3
Lalb_Chr22g0355171 Lupinus albus HOM05D004504 ORTHO05D005324 3.0e-25 119.8 229 39.7
AUR62022419 Chenopodium quinoa HOM05D004504 ORTHO05D005324 4.0e-25 119.4 261 36.4
AUR62042173 Chenopodium quinoa HOM05D004504 ORTHO05D005324 4.0e-25 119.4 259 36.7
Medtr3g101560 Medicago truncatula HOM05D004504 ORTHO05D005324 5.2e-25 119.0 222 37.8
Lj5g0012770 Lotus japonicus HOM05D004504 ORTHO05D005324 6.7e-25 118.6 231 38.5
Eucgr.F00237 Eucalyptus grandis HOM05D004504 ORTHO05D005324 8.8e-25 118.2 214 42.5
Carub.0008s0620 Capsella rubella HOM05D004504 ORTHO05D005324 1.2e-24 117.9 254 39.0
Gohir.A06G017400 Gossypium hirsutum HOM05D004504 ORTHO05D005324 1.5e-24 117.5 223 43.9
HPP92_016728 Vanilla planifolia HOM05D004504 ORTHO05D005324 1.5e-24 117.5 228 41.2
DCAR_019457 Daucus carota HOM05D004504 ORTHO05D005324 2.0e-24 117.1 252 38.5
Glyma.17G243000 Glycine max HOM05D004504 ORTHO05D005324 2.6e-24 116.7 235 37.4
Sed0004281 Sechium edule HOM05D004504 ORTHO05D005324 2.6e-24 116.7 218 40.8
AT5G42750 Arabidopsis thaliana HOM05D004504 ORTHO05D005324 3.3e-24 116.3 267 35.2
PGR083G0364 Punica granatum HOM05D004504 ORTHO05D005324 3.3e-24 116.3 275 38.2
PSO170G6689 Papaver somniferum HOM05D004504 ORTHO05D005324 4.4e-24 115.9 280 36.1
AL8G18380 Arabidopsis lyrata HOM05D004504 ORTHO05D005324 1.7e-23 114.0 255 38.0
Rhsim06G0048600 Rhododendron simsii HOM05D004504 ORTHO05D005324 1.7e-23 114.0 225 44.0
arahy.Tifrunner.gnm1.ann1.2LG1YU Arachis hypogaea HOM05D004504 ORTHO05D005324 2.2e-23 113.6 253 36.4
PSO210G2137 Papaver somniferum HOM05D004504 ORTHO05D005324 2.2e-23 113.6 269 36.4
RcHm_v2.0_Chr6g0307601 Rosa chinensis HOM05D004504 ORTHO05D005324 2.2e-23 113.6 226 39.4
THA.LOC104804561 Tarenaya hassleriana HOM05D004504 ORTHO05D005324 2.8e-23 113.2 215 40.0
EL10Ac1g01723 Beta vulgaris HOM05D004504 ORTHO05D005324 4.8e-23 112.5 218 40.4
Aa31LG9G12800 Aethionema arabicum HOM05D004504 ORTHO05D005324 6.3e-23 112.1 248 39.1
A02p27570 Brassica napus HOM05D004504 ORTHO05D005324 6.3e-23 112.1 256 39.1
BraA02t07790Z Brassica rapa HOM05D004504 ORTHO05D005324 6.3e-23 112.1 256 39.1
SHI08291 Sapria himalayana HOM05D004504 ORTHO05D005324 6.3e-23 112.1 221 40.3
BcaB07g30603 Brassica carinata HOM05D004504 ORTHO05D005324 1.1e-22 111.3 255 35.7
TPR.G28115 Trifolium pratense HOM05D004504 ORTHO05D005324 2.4e-22 110.2 200 42.5
Atru.chr13.656 Acer truncatum HOM05D004504 ORTHO05D005324 3.1e-22 109.8 264 36.4
Gohir.D06G015500 Gossypium hirsutum HOM05D004504 ORTHO05D005324 5.3e-22 109.0 223 43.0
BolC2t10378H Brassica oleracea HOM05D004504 ORTHO05D005324 9.1e-22 108.2 256 39.1
CAN.G371.30 Capsicum annuum HOM05D004504 ORTHO05D005324 9.1e-22 108.2 254 38.2
CARHR181660 Cardamine hirsuta HOM05D004504 ORTHO05D005324 1.2e-21 107.8 247 36.4
Oeu057287.1 Olea europaea HOM05D004504 ORTHO05D005324 2.7e-21 106.7 116 53.4
CDE02G0300 Ceratophyllum demersum HOM05D004504 ORTHO05D005324 5.9e-21 105.5 223 37.2
Nn1g04891 Nelumbo nucifera HOM05D004504 ORTHO05D005324 5.9e-21 105.5 172 41.3
Thhalv10003420m.g Eutrema salsugineum HOM05D004504 ORTHO05D005324 1.0e-20 104.8 256 37.1
Aqoxy6G01353 Aquilegia oxysepala HOM05D004504 ORTHO05D005324 1.7e-20 104.0 232 31.9
PSO675G2195 Papaver somniferum HOM05D004504 ORTHO05D005324 1.7e-20 104.0 183 38.8
Lalb_Chr24g0399251 Lupinus albus HOM05D004504 ORTHO05D005324 2.9e-20 103.2 205 38.5
PGR031G2315 Punica granatum HOM05D004504 ORTHO05D005324 3.8e-20 102.8 232 36.2
PSO541G3526 Papaver somniferum HOM05D004504 ORTHO05D005324 6.5e-20 102.1 231 34.2
Dinv35969 Davidia involucrata HOM05D004504 ORTHO05D005324 8.5e-20 101.7 147 44.2
BcaC03g16510 Brassica carinata HOM05D004504 ORTHO05D005324 1.1e-19 101.3 256 37.5
C02p43260 Brassica napus HOM05D004504 ORTHO05D005324 1.1e-19 101.3 256 37.5
Sp2g07370 Schrenkiella parvula HOM05D004504 ORTHO05D005324 1.9e-19 100.5 214 40.7
Peaxi162Scf00252g00123 Petunia axillaris HOM05D004504 ORTHO05D005324 3.2e-19 99.8 236 36.0
TPR.G17544 Trifolium pratense HOM05D004504 ORTHO05D005324 7.2e-19 98.6 240 32.9
Lj4P774T14 Lonicera japonica HOM05D004504 ORTHO05D005324 1.6e-18 97.4 152 43.4
Medtr1g019750 Medicago truncatula HOM05D004504 ORTHO05D005324 3.6e-18 96.3 241 35.3
Lj4P54T34 Lonicera japonica HOM05D004504 ORTHO05D005324 1.0e-17 94.7 68 72.1
Gorai.010G018300 Gossypium raimondii HOM05D004504 ORTHO05D005324 2.3e-17 93.6 225 39.6
CDE06G1443 Ceratophyllum demersum HOM05D004504 ORTHO05D005324 5.2e-17 92.4 222 35.6
THA.LOC104806943 Tarenaya hassleriana HOM05D004504 ORTHO05D005324 6.8e-17 92.0 239 36.0
unitig_26.g10024 Utricularia gibba HOM05D004504 ORTHO05D005324 6.8e-17 92.0 213 35.7
unitig_899.g15623 Utricularia gibba HOM05D004504 ORTHO05D005324 1.7e-15 87.4 228 34.6
CDE02G3707 Ceratophyllum demersum HOM05D004504 ORTHO05D005324 2.4e-14 83.6 219 33.8
Nitab4.5_0007986g0010 Nicotiana tabacum HOM05D004504 ORTHO05D005324 5.4e-14 82.4 173 37.6
Actinidia22620 Actinidia chinensis HOM05D001164 ORTHO05D001031 9.1e-14 81.6 157 40.1
unitig_749.g13680 Utricularia gibba HOM05D004504 ORTHO05D005324 5.9e-13 79.0 206 31.6
Oeu044838.1 Olea europaea HOM05D004504 ORTHO05D005324 3.8e-12 76.3 120 44.2
SalBow2G2132 Salvia bowleyana HOM05D004504 ORTHO05D005324 4.2e-11 72.8 97 48.5
Eucgr.F02356 Eucalyptus grandis HOM05D004504 ORTHO05D005324 1.6e-10 70.9 215 33.5
Psat6g012120 Pisum sativum HOM05D004504 ORTHO05D005324 1.6e-10 70.9 88 48.9
GSVIVG01009517001 Vitis vinifera HOM05D004504 ORTHO05D005324 2.1e-10 70.5 84 50.0
Sc15g0006190 Simmondsia chinensis HOM05D004504 ORTHO05D005324 7.5e-08 62.0 210 30.5
Sc15g0006270 Simmondsia chinensis HOM05D004504 ORTHO05D005324 7.5e-08 62.0 210 30.5
CDE09G0998 Ceratophyllum demersum HOM05D004504 ORTHO05D005324 1.4e-06 57.8 66 48.5
CDE09G1057 Ceratophyllum demersum HOM05D004504 ORTHO05D005324 1.4e-06 57.8 60 53.3
THA.LOC109116829 Tarenaya hassleriana HOM05D004504 ORTHO05D005324 2.4e-06 57.0 60 48.3


User provided reference genes

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