Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold14G07004 Striga asiatica HOM05D004168 ORTHO05D004999 6.1e-174 614.0 299 100.0
MSTRG.1350 Avicennia marina HOM05D004168 ORTHO05D004999 5.5e-98 361.7 245 69.8
Oeu043572.2 Olea europaea HOM05D004168 ORTHO05D004999 8.7e-96 354.4 245 69.0
Migut.C00576 Erythranthe guttata HOM05D004168 ORTHO05D004999 2.2e-94 349.7 256 69.5
Cc10_g04130 Coffea canephora HOM05D004168 ORTHO05D004999 2.3e-88 329.7 228 68.9
unitig_19.g30012 Utricularia gibba HOM05D004168 ORTHO05D004999 1.4e-85 320.5 234 66.2
unitig_8.g5020 Utricularia gibba HOM05D004168 ORTHO05D004999 1.4e-85 320.5 234 66.2
Nitab4.5_0002760g0060 Nicotiana tabacum HOM05D004168 ORTHO05D004999 1.8e-85 320.1 252 60.7
Peaxi162Scf00252g00056 Petunia axillaris HOM05D004168 ORTHO05D004999 4.1e-85 318.9 249 61.4
Actinidia38059 Actinidia chinensis HOM05D004168 ORTHO05D004999 1.2e-84 317.4 245 62.0
Nitab4.5_0000287g0250 Nicotiana tabacum HOM05D004168 ORTHO05D004999 2.6e-84 316.2 253 61.3
Actinidia29872 Actinidia chinensis HOM05D004168 ORTHO05D004999 5.9e-84 315.1 251 61.4
vmacro21519 Vaccinium macrocarpon HOM05D004168 ORTHO05D004999 7.7e-84 314.7 256 60.9
Sopen04g032490 Solanum pennellii HOM05D004168 ORTHO05D004999 1.7e-83 313.5 251 61.0
CSS0011562 Camellia sinensis var. sinensis HOM05D004168 ORTHO05D004999 2.9e-83 312.8 186 77.4
CSS0013402 Camellia sinensis var. sinensis HOM05D004168 ORTHO05D004999 2.9e-83 312.8 186 77.4
Potri.002G126000 Populus trichocarpa HOM05D004168 ORTHO05D004999 3.8e-83 312.4 245 62.4
Manes.05G174100 Manihot esculenta HOM05D004168 ORTHO05D004999 6.5e-83 311.6 246 63.0
Ciclev10002229m.g Citrus clementina HOM05D004168 ORTHO05D004999 8.5e-83 311.2 266 60.5
Solyc04g078890.4 Solanum lycopersicum HOM05D004168 ORTHO05D004999 8.5e-83 311.2 251 60.6
MSTRG.22261 Avicennia marina HOM05D004168 ORTHO05D004999 1.1e-82 310.8 243 63.8
Aqoxy1G00522 Aquilegia oxysepala HOM05D004168 ORTHO05D004999 2.5e-82 309.7 254 61.8
Rhsim06G0050100 Rhododendron simsii HOM05D004168 ORTHO05D004999 3.2e-82 309.3 260 60.0
Sc02g0007150 Simmondsia chinensis HOM05D004168 ORTHO05D004999 3.2e-82 309.3 203 70.9
PGSC0003DMG401007971 Solanum tuberosum HOM05D004168 ORTHO05D004999 4.2e-82 308.9 250 60.0
Rhsim07G0228300 Rhododendron simsii HOM05D004168 ORTHO05D004999 5.5e-82 308.5 226 64.6
PGR083G0647 Punica granatum HOM05D004168 ORTHO05D004999 1.2e-81 307.4 191 72.3
ECA247G0458 Erigeron canadensis HOM05D004168 ORTHO05D004999 1.6e-81 307.0 249 61.0
GSVIVG01024177001 Vitis vinifera HOM05D004168 ORTHO05D004999 2.7e-81 306.2 180 75.6
Lj4A773T42 Lonicera japonica HOM05D004168 ORTHO05D004999 6.1e-81 305.1 225 65.3
TAR376G0672 Trochodendron aralioides HOM05D004168 ORTHO05D004999 6.1e-81 305.1 173 79.2
GSVIVG01009491001 Vitis vinifera HOM05D004168 ORTHO05D004999 6.1e-81 305.1 178 76.4
Cpa.g.sc13.291 Carica papaya HOM05D004168 ORTHO05D004999 1.4e-80 303.9 232 62.9
CsaV3_4G034330 Cucumis sativus L. HOM05D004168 ORTHO05D004999 1.4e-80 303.9 178 75.3
CAN.G1030.1 Capsicum annuum HOM05D004168 ORTHO05D004999 2.3e-80 303.1 248 59.7
Gohir.A05G202600 Gossypium hirsutum HOM05D004168 ORTHO05D004999 3.9e-80 302.4 264 58.7
Lsat_1_v5_gn_1_21041 Lactuca sativa HOM05D004168 ORTHO05D004999 6.7e-80 301.6 248 61.7
TWI36G1266 Tripterygium wilfordii HOM05D004168 ORTHO05D004999 6.7e-80 301.6 196 72.4
TAR628G1263 Trochodendron aralioides HOM05D004168 ORTHO05D004999 1.1e-79 300.8 173 76.9
COL.COLO4_26513 Corchorus olitorius HOM05D004168 ORTHO05D004999 1.5e-79 300.4 178 74.7
Sabra02G0098700 Salix brachista HOM05D004168 ORTHO05D004999 2.0e-79 300.1 238 61.8
Gorai.009G212100 Gossypium raimondii HOM05D004168 ORTHO05D004999 2.6e-79 299.7 178 74.7
Manes.18G037500 Manihot esculenta HOM05D004168 ORTHO05D004999 2.6e-79 299.7 252 56.7
Gohir.D05G205800 Gossypium hirsutum HOM05D004168 ORTHO05D004999 3.3e-79 299.3 264 58.3
QL12p001799 Quercus lobata HOM05D004168 ORTHO05D004999 3.3e-79 299.3 176 77.3
Eucgr.F00224 Eucalyptus grandis HOM05D004168 ORTHO05D004999 4.4e-79 298.9 184 72.8
MD08G1101200 Malus domestica HOM05D004168 ORTHO05D004999 7.4e-79 298.1 177 76.3
THA.LOC104812820 Tarenaya hassleriana HOM05D004168 ORTHO05D004999 7.4e-79 298.1 246 59.3
Duzib116G0163 Durio zibethinus HOM05D004168 ORTHO05D004999 9.7e-79 297.7 197 69.5
DCAR_012778 Daucus carota HOM05D004168 ORTHO05D004999 1.7e-78 297.0 187 71.7
Thecc.08G006900 Theobroma cacao HOM05D004168 ORTHO05D004999 1.7e-78 297.0 222 64.0
HanXRQChr02g0039451 Helianthus annuus HOM05D004168 ORTHO05D004999 2.2e-78 296.6 245 62.0
FAN20G1800 Fragaria x ananassa HOM05D004168 ORTHO05D004999 3.7e-78 295.8 178 74.7
MBI15_g10497_MAGBIO Magnolia biondii HOM05D004168 ORTHO05D004999 3.7e-78 295.8 243 60.5
Prupe.1G435200 Prunus persica HOM05D004168 ORTHO05D004999 3.7e-78 295.8 177 75.7
CARHR224370 Cardamine hirsuta HOM05D004168 ORTHO05D004999 8.2e-78 294.7 261 57.5
RcHm_v2.0_Chr6g0307961 Rosa chinensis HOM05D004168 ORTHO05D004999 1.1e-77 294.3 178 74.7
CiPaw.12G069100 Carya illinoinensis HOM05D004168 ORTHO05D004999 1.4e-77 293.9 232 62.9
Os01g0772400 Oryza sativa ssp. japonica HOM05D004168 ORTHO05D004999 1.4e-77 293.9 175 76.0
CANSAT25G0219 Cannabis sativa HOM05D004168 ORTHO05D004999 1.8e-77 293.5 184 70.7
FvH4_2g34410 Fragaria vesca HOM05D004168 ORTHO05D004999 2.4e-77 293.1 178 74.2
FAN24G2672 Fragaria x ananassa HOM05D004168 ORTHO05D004999 2.4e-77 293.1 178 74.2
Dinv35958 Davidia involucrata HOM05D004168 ORTHO05D004999 3.1e-77 292.7 252 61.9
BraA01t00914Z Brassica rapa HOM05D004168 ORTHO05D004999 5.3e-77 292.0 247 57.9
PSO384G0569 Papaver somniferum HOM05D004168 ORTHO05D004999 5.3e-77 292.0 256 59.4
Sed0010101 Sechium edule HOM05D004168 ORTHO05D004999 7.0e-77 291.6 222 61.7
ClCG05G019900 Citrullus lanatus HOM05D004168 ORTHO05D004999 9.1e-77 291.2 187 72.2
DCAR_019452 Daucus carota HOM05D004168 ORTHO05D004999 1.2e-76 290.8 182 73.6
Sp7g16490 Schrenkiella parvula HOM05D004168 ORTHO05D004999 3.5e-76 289.3 262 57.6
FAN15G2652 Fragaria x ananassa HOM05D004168 ORTHO05D004999 5.9e-76 288.5 239 60.7
Glyma.06G040100 Glycine max HOM05D004168 ORTHO05D004999 5.9e-76 288.5 214 65.0
Gorai.010G019900 Gossypium raimondii HOM05D004168 ORTHO05D004999 7.7e-76 288.1 225 59.6
BcaC09g51623 Brassica carinata HOM05D004168 ORTHO05D004999 1.0e-75 287.7 257 56.0
C01p11320 Brassica napus HOM05D004168 ORTHO05D004999 1.0e-75 287.7 259 55.6
DCAR_008795 Daucus carota HOM05D004168 ORTHO05D004999 1.3e-75 287.3 183 69.9
BolC1t01097H Brassica oleracea HOM05D001479 ORTHO05D001401 1.7e-75 287.0 250 56.0
TPR.G24157 Trifolium pratense HOM05D004168 ORTHO05D004999 1.7e-75 287.0 246 59.3
arahy.Tifrunner.gnm1.ann1.TVNS6S Arachis hypogaea HOM05D004168 ORTHO05D004999 2.2e-75 286.6 252 60.3
Carub.0007s2373 Capsella rubella HOM05D004168 ORTHO05D004999 2.2e-75 286.6 262 55.0
PGR031G2881 Punica granatum HOM05D004168 ORTHO05D004999 2.2e-75 286.6 178 74.2
Glyma.04G039100 Glycine max HOM05D004168 ORTHO05D004999 2.9e-75 286.2 187 70.6
Gohir.D06G017000 Gossypium hirsutum HOM05D004168 ORTHO05D004999 2.9e-75 286.2 225 59.1
Aa31LG6G400 Aethionema arabicum HOM05D004168 ORTHO05D004999 3.8e-75 285.8 261 56.7
CiPaw.11G099200 Carya illinoinensis HOM05D004168 ORTHO05D004999 3.8e-75 285.8 175 73.1
EL10Ac9g21781 Beta vulgaris HOM05D004168 ORTHO05D004999 8.5e-75 284.6 207 66.2
BcaNung06715 Brassica carinata HOM05D004168 ORTHO05D004999 8.5e-75 284.6 261 56.3
Medtr3g101750 Medicago truncatula HOM05D004168 ORTHO05D004999 1.1e-74 284.3 178 73.0
AL7G36940 Arabidopsis lyrata HOM05D004168 ORTHO05D004999 1.9e-74 283.5 267 55.4
AT4G17650 Arabidopsis thaliana HOM05D004168 ORTHO05D004999 2.5e-74 283.1 272 54.0
A01p09710 Brassica napus HOM05D004168 ORTHO05D004999 2.5e-74 283.1 241 57.7
Psat5g043040 Pisum sativum HOM05D004168 ORTHO05D004999 2.5e-74 283.1 188 68.6
HPP92_018641 Vanilla planifolia HOM05D004168 ORTHO05D004999 2.5e-74 283.1 175 73.1
Ca_15947_v3 Cicer arietinum L. HOM05D004168 ORTHO05D004999 4.2e-74 282.3 180 71.1
HanXRQChr09g0267591 Helianthus annuus HOM05D004168 ORTHO05D004999 4.2e-74 282.3 171 73.7
BcaNung00072 Brassica carinata HOM05D004168 ORTHO05D004999 5.5e-74 282.0 255 56.1
Thhalv10026045m.g Eutrema salsugineum HOM05D004168 ORTHO05D004999 5.5e-74 282.0 261 55.2
SalBow7G4699 Salvia bowleyana HOM05D004168 ORTHO05D004999 7.2e-74 281.6 214 65.9
EL10As14g24078 Beta vulgaris HOM05D004168 ORTHO05D004999 1.6e-73 280.4 178 72.5
CDE06G0679 Ceratophyllum demersum HOM05D004168 ORTHO05D004999 1.6e-73 280.4 180 70.0
Hund06209 Selenicereus undatus HOM05D004168 ORTHO05D004999 1.6e-73 280.4 222 61.3
Lj1g0018004 Lotus japonicus HOM05D004168 ORTHO05D004999 2.1e-73 280.0 185 70.3
Sed0009126 Sechium edule HOM05D004168 ORTHO05D004999 3.6e-73 279.3 263 54.4
TWI56G0083 Tripterygium wilfordii HOM05D004168 ORTHO05D004999 3.6e-73 279.3 166 75.9
arahy.Tifrunner.gnm1.ann1.85Q9C5 Arachis hypogaea HOM05D004168 ORTHO05D004999 4.7e-73 278.9 183 70.5
VMungo1309G0269 Vigna mungo HOM05D004168 ORTHO05D004999 4.7e-73 278.9 233 59.2
Hund00296 Selenicereus undatus HOM05D004168 ORTHO05D004999 6.1e-73 278.5 215 62.8
Hund00303 Selenicereus undatus HOM05D004168 ORTHO05D004999 6.1e-73 278.5 215 62.8
arahy.Tifrunner.gnm1.ann1.IT5IHR Arachis hypogaea HOM05D004168 ORTHO05D004999 8.0e-73 278.1 248 58.5
AUR62011389 Chenopodium quinoa HOM05D004168 ORTHO05D004999 8.0e-73 278.1 213 64.8
AUR62016672 Chenopodium quinoa HOM05D004168 ORTHO05D004999 1.4e-72 277.3 252 57.9
BraA08t33308Z Brassica rapa HOM05D004168 ORTHO05D004999 2.3e-72 276.6 249 55.4
BcaB04g18436 Brassica carinata HOM05D004168 ORTHO05D004999 6.7e-72 275.0 189 66.1
A08p13270 Brassica napus HOM05D004168 ORTHO05D004999 1.5e-71 273.9 202 63.9
ECA232G1782 Erigeron canadensis HOM05D004168 ORTHO05D004999 2.6e-71 273.1 216 60.6
Lalb_Chr23g0267171 Lupinus albus HOM05D004168 ORTHO05D004999 5.7e-71 271.9 228 59.6
Lsat_1_v5_gn_4_125661 Lactuca sativa HOM05D004168 ORTHO05D004999 7.4e-71 271.6 169 72.2
Aqoxy2G00574 Aquilegia oxysepala HOM05D004168 ORTHO05D004999 2.8e-70 269.6 168 72.0
Ah.01g019770 Amaranthus hybridus HOM05D004168 ORTHO05D004999 8.2e-70 268.1 225 58.7
Nn2g14539 Nelumbo nucifera HOM05D004168 ORTHO05D004999 4.5e-68 262.3 153 77.8
MD15G1082400 Malus domestica HOM05D004168 ORTHO05D004999 3.8e-67 259.2 177 69.5
CANSAT11G0235 Cannabis sativa HOM05D004168 ORTHO05D004999 2.1e-65 253.4 251 52.2
FAN27G1360 Fragaria x ananassa HOM05D004168 ORTHO05D004999 8.0e-65 251.5 150 74.0
BcaC07g38091 Brassica carinata HOM05D004168 ORTHO05D004999 5.7e-63 245.4 194 59.3
Gohir.A06G018666 Gossypium hirsutum HOM05D004168 ORTHO05D004999 5.9e-60 235.3 225 51.6
MELO3C016753.2 Cucumis melo HOM05D004168 ORTHO05D004999 7.7e-60 235.0 137 76.6
Haze_17522 Corylus avellana HOM05D004168 ORTHO05D004999 1.1e-58 231.1 141 73.0
Mapoly0004s0036 Marchantia polymorpha HOM05D004168 ORTHO05D004999 1.5e-58 230.7 182 57.7
Zm00001eb370050 Zea mays HOM05D004168 ORTHO05D004999 1.5e-58 230.7 137 75.9
Cfa018557 Carpinus fangiana HOM05D004168 ORTHO05D004999 7.2e-58 228.4 141 72.3
Pp3c21_16730 Physcomitrium patens HOM05D004168 ORTHO05D004999 4.7e-57 225.7 171 60.8
Eucgr.F02339 Eucalyptus grandis HOM05D004168 ORTHO05D004999 1.0e-56 224.6 188 60.1
Cfa012532 Carpinus fangiana HOM05D004168 ORTHO05D002421 1.8e-56 223.8 162 66.0
Eucgr.F02343 Eucalyptus grandis HOM05D004168 ORTHO05D004999 5.2e-56 222.2 152 67.1
Eucgr.L02367 Eucalyptus grandis HOM05D004168 ORTHO05D004999 5.7e-55 218.8 155 65.2
SMO340G0178 Selaginella moellendorffii HOM05D004168 ORTHO05D004999 9.8e-55 218.0 164 59.8
AagrBONN_evm.TU.Sc2ySwM_228.4844 Anthoceros agrestis HOM05D004168 ORTHO05D004999 2.2e-54 216.9 170 57.1
Phvul.009G065300 Phaseolus vulgaris HOM05D004168 ORTHO05D004999 2.8e-54 216.5 136 71.3
Pp3c22_1290 Physcomitrium patens HOM05D004168 ORTHO05D004999 3.1e-53 213.0 168 58.3
SEGI_05154 Sequoiadendron giganteum HOM05D004168 ORTHO05D004999 3.1e-53 213.0 143 64.3
vmacro04448 Vaccinium macrocarpon HOM05D004168 ORTHO05D004999 1.7e-51 207.2 226 48.7
CBR_g66636 Chara braunii HOM05D004168 ORTHO05D004999 2.9e-51 206.5 166 53.6
Duzib093G1913 Durio zibethinus HOM05D004168 ORTHO05D004999 8.9e-48 194.9 197 50.3
Lalb_Chr11g0062631 Lupinus albus HOM05D004168 ORTHO05D004999 1.2e-47 194.5 111 78.4
PSO339G0184 Papaver somniferum HOM05D004168 ORTHO05D004999 3.7e-46 189.5 255 44.7
arahy.Tifrunner.gnm1.ann1.F8YVUF Arachis hypogaea HOM05D004168 ORTHO05D004999 1.2e-31 141.4 143 52.4
Zm00001eb151870 Zea mays HOM05D004168 ORTHO05D004999 3.4e-31 139.8 89 70.8
SEGI_12997 Sequoiadendron giganteum HOM05D004168 ORTHO05D004999 9.8e-31 138.3 93 65.6
arahy.Tifrunner.gnm1.ann1.ZKL3GY Arachis hypogaea HOM05D004168 ORTHO05D004999 8.3e-30 135.2 84 71.4
AUR62007226 Chenopodium quinoa HOM05D004168 ORTHO05D004999 5.4e-29 132.5 97 64.9
SEGI_03271 Sequoiadendron giganteum HOM05D004168 ORTHO05D004999 6.0e-28 129.0 88 63.6
arahy.Tifrunner.gnm1.ann1.RZ37P0 Arachis hypogaea HOM05D004168 ORTHO05D004999 5.1e-27 125.9 161 45.3
Cre07.g345700 Chlamydomonas reinhardtii HOM05D004168 ORTHO05D004999 4.3e-26 122.9 213 31.9
Atru.chr13.696 Acer truncatum HOM05D004168 ORTHO05D004999 2.6e-23 113.6 63 76.2
MCO12G423 Micromonas commoda HOM05D004168 ORTHO05D004999 4.4e-23 112.8 141 39.0
Oeu049977.1 Olea europaea HOM05D004168 ORTHO05D004999 1.3e-22 111.3 77 68.8
Sc15g0006120 Simmondsia chinensis HOM05D004168 ORTHO05D003195 1.3e-22 111.3 65 75.4
arahy.Tifrunner.gnm1.ann1.H0AX16 Arachis hypogaea HOM05D004168 ORTHO05D004999 3.2e-21 106.7 73 68.5
arahy.Tifrunner.gnm1.ann1.TNR0C9 Arachis hypogaea HOM05D004168 ORTHO05D004999 1.1e-18 98.2 67 65.7
arahy.Tifrunner.gnm1.ann1.CBC9PR Arachis hypogaea HOM05D004168 ORTHO05D004999 1.2e-17 94.7 86 53.5
Gohir.A06G060332 Gossypium hirsutum HOM05D004168 ORTHO05D004999 2.9e-14 83.6 46 78.3
Lj6g0018320 Lotus japonicus HOM05D004168 ORTHO05D004999 7.1e-13 79.0 52 63.5
Gohir.D01G114560 Gossypium hirsutum HOM05D004168 ORTHO05D004999 6.0e-12 75.9 46 71.7
Gorai.002G139800 Gossypium raimondii HOM05D004168 ORTHO05D004999 6.0e-12 75.9 46 71.7
COL.COLO4_26873 Corchorus olitorius HOM05D004168 ORTHO05D004999 2.8e-09 67.0 39 66.7
Gohir.D06G118000 Gossypium hirsutum HOM05D004168 ORTHO05D004999 8.1e-09 65.5 43 69.8
MBI15_g33084_MAGBIO Magnolia biondii HOM05D001642 ORTHO05D002129 1.5e-07 61.2 36 69.4


User provided reference genes

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