Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold14G06996 Striga asiatica HOM05D008057 ORTHO05D003476 7.8e-158 560.5 289 100.0
SGA_v2.0_scaffold28G11776 Striga asiatica HOM05D008057 ORTHO05D003476 2.2e-56 223.4 274 51.8
MSTRG.22259 Avicennia marina HOM05D008057 ORTHO05D003476 1.8e-53 213.8 293 45.1
Migut.N02713 Erythranthe guttata HOM05D008057 ORTHO05D003476 2.7e-41 173.3 263 44.1
Dinv22201 Davidia involucrata HOM05D008057 ORTHO05D003476 4.0e-21 106.3 283 30.0
MBI03_g11904_MAGBIO Magnolia biondii HOM05D008057 ORTHO05D003476 1.5e-20 104.4 131 42.0
Sabra18G0127300 Salix brachista HOM05D008057 ORTHO05D003476 1.5e-20 104.4 115 45.2
Potri.018G151900 Populus trichocarpa HOM05D008057 ORTHO05D003476 7.6e-20 102.1 281 28.8
Eucgr.K02337 Eucalyptus grandis HOM05D008057 ORTHO05D003476 9.9e-20 101.7 255 31.4
Hma1.2p1_0016F.1_g010880 Hydrangea macrophylla HOM05D008057 ORTHO05D003476 9.9e-20 101.7 279 30.5
Lalb_Chr14g0370111 Lupinus albus HOM05D008057 ORTHO05D003476 1.7e-19 100.9 129 48.8
Cpa.g.sc124.3 Carica papaya HOM05D008057 ORTHO05D003476 2.2e-19 100.5 103 50.5
GSVIVG01024238001 Vitis vinifera HOM05D008057 ORTHO05D003476 2.2e-19 100.5 148 37.8
TAR311G0002 Trochodendron aralioides HOM05D008057 ORTHO05D003476 2.9e-19 100.1 286 29.4
Sopen03g029780 Solanum pennellii HOM05D008057 ORTHO05D003476 3.7e-19 99.8 266 32.0
Nn3g18533 Nelumbo nucifera HOM05D008057 ORTHO05D003476 1.4e-18 97.8 111 44.1
Nitab4.5_0008182g0020 Nicotiana tabacum HOM05D008057 ORTHO05D003476 2.4e-18 97.1 295 32.9
TAR629G2050 Trochodendron aralioides HOM05D008057 ORTHO05D003476 2.4e-18 97.1 291 26.1
Cc00_g01550 Coffea canephora HOM05D008057 ORTHO05D003476 4.1e-18 96.3 323 28.2
Solyc03g019840.4 Solanum lycopersicum HOM05D008057 ORTHO05D003476 4.1e-18 96.3 259 32.0
arahy.Tifrunner.gnm1.ann1.1W7ASM Arachis hypogaea HOM05D008057 ORTHO05D003476 5.4e-18 95.9 155 36.1
Nitab4.5_0009307g0060 Nicotiana tabacum HOM05D008057 ORTHO05D003476 9.2e-18 95.1 288 32.3
Cfa017812 Carpinus fangiana HOM05D008057 ORTHO05D003476 2.1e-17 94.0 311 27.3
unitig_746.g26880 Utricularia gibba HOM05D008057 ORTHO05D003476 2.7e-17 93.6 294 27.9
arahy.Tifrunner.gnm1.ann1.RQNS35 Arachis hypogaea HOM05D008057 ORTHO05D003476 4.6e-17 92.8 162 34.6
Peaxi162Scf00171g00028 Petunia axillaris HOM05D008057 ORTHO05D003476 4.6e-17 92.8 310 29.7
TPR.G31356 Trifolium pratense HOM05D008057 ORTHO05D003476 6.0e-17 92.4 298 31.2
Duzib068G0937 Durio zibethinus HOM05D008057 ORTHO05D003476 7.8e-17 92.0 313 29.1
Atru.chr9.28 Acer truncatum HOM05D008057 ORTHO05D003476 1.3e-16 91.3 297 27.6
Lj2g0026608 Lotus japonicus HOM05D008057 ORTHO05D003476 6.6e-16 89.0 223 34.1
CiPaw.16G075800 Carya illinoinensis HOM05D008057 ORTHO05D003476 8.6e-16 88.6 123 45.5
PGSC0003DMG401015209 Solanum tuberosum HOM05D008057 ORTHO05D003476 8.6e-16 88.6 260 28.8
Rhsim10G0138900 Rhododendron simsii HOM05D008057 ORTHO05D003476 1.5e-15 87.8 228 30.7
Medtr6g069010 Medicago truncatula HOM05D008057 ORTHO05D003476 2.5e-15 87.0 132 39.4
PGR044G1600 Punica granatum HOM05D008057 ORTHO05D003476 4.3e-15 86.3 307 26.4
TWI81G0899 Tripterygium wilfordii HOM05D008057 ORTHO05D003476 4.3e-15 86.3 129 41.1
Glyma.09G160700 Glycine max HOM05D008057 ORTHO05D003476 5.6e-15 85.9 158 36.1
Lsat_1_v5_gn_8_540 Lactuca sativa HOM05D008057 ORTHO05D003476 1.2e-14 84.7 240 26.2
Psat1g117960 Pisum sativum HOM05D008057 ORTHO05D003476 2.1e-14 84.0 134 37.3
Gohir.D02G118700 Gossypium hirsutum HOM05D008057 ORTHO05D003476 6.2e-14 82.4 105 45.7
HanXRQChr08g0226101 Helianthus annuus HOM05D008057 ORTHO05D003476 1.1e-13 81.6 255 27.5
AUR62042766 Chenopodium quinoa HOM05D008057 ORTHO05D003476 1.8e-13 80.9 101 45.5
ECA233G4523 Erigeron canadensis HOM05D008057 ORTHO05D003476 1.8e-13 80.9 178 32.6
Glyma.16G210200 Glycine max HOM05D008057 ORTHO05D003476 1.8e-13 80.9 136 36.0
Gohir.A03G090600 Gossypium hirsutum HOM05D008057 ORTHO05D003476 1.8e-13 80.9 107 44.9
Gorai.005G135100 Gossypium raimondii HOM05D008057 ORTHO05D003476 1.8e-13 80.9 105 44.8
Ciclev10020800m.g Citrus clementina HOM05D008057 ORTHO05D003476 2.4e-13 80.5 234 28.2
COL.COLO4_33681 Corchorus olitorius HOM05D002656 ORTHO05D003062 3.1e-13 80.1 81 50.6
Prupe.8G056400 Prunus persica HOM05D015681 ORTHO05D003476 6.8e-13 79.0 70 52.9
DCAR_014755 Daucus carota HOM05D008057 ORTHO05D003476 8.9e-13 78.6 114 43.0
PSO782G0732 Papaver somniferum HOM05D045975 ORTHO05D003476 1.5e-12 77.8 147 34.0
Aqoxy3G04343 Aquilegia oxysepala HOM05D008057 ORTHO05D003476 3.4e-12 76.6 264 25.8
PSO063G6649 Papaver somniferum HOM05D045975 ORTHO05D003476 4.4e-12 76.3 147 32.7
Phvul.004G136200 Phaseolus vulgaris HOM05D008057 ORTHO05D003476 4.4e-12 76.3 146 34.2
CARHR272010 Cardamine hirsuta HOM05D012436 ORTHO05D003476 9.9e-12 75.1 105 42.9
Oeu050291.1 Olea europaea HOM05D008057 ORTHO05D003476 1.3e-11 74.7 76 47.4
RcHm_v2.0_Chr7g0218101 Rosa chinensis HOM05D015681 ORTHO05D003476 1.3e-11 74.7 109 41.3
VMungo0464G0225 Vigna mungo HOM05D008057 ORTHO05D003476 1.7e-11 74.3 156 31.4
CDE04G2158 Ceratophyllum demersum HOM05D008057 ORTHO05D003476 3.8e-11 73.2 164 28.7
Sp6g19870 Schrenkiella parvula HOM05D012436 ORTHO05D003476 3.8e-11 73.2 231 28.6
AL8G34310 Arabidopsis lyrata HOM05D012436 ORTHO05D003476 4.9e-11 72.8 93 40.9
ClCG03G001720 Citrullus lanatus HOM05D008057 ORTHO05D003476 4.9e-11 72.8 145 32.4
MD10G1047400 Malus domestica HOM05D015681 ORTHO05D003476 6.4e-11 72.4 98 39.8
QL10p035701 Quercus lobata HOM05D008057 ORTHO05D003476 6.4e-11 72.4 270 25.9
CsaV3_1G033920 Cucumis sativus L. HOM05D008057 ORTHO05D003476 8.4e-11 72.0 269 25.7
A03p12360 Brassica napus HOM05D012436 ORTHO05D003476 1.1e-10 71.6 193 28.5
Sed0004109 Sechium edule HOM05D008057 ORTHO05D003476 1.4e-10 71.2 259 26.6
Ah.09g232210 Amaranthus hybridus HOM05D002613 ORTHO05D003140 1.9e-10 70.9 213 29.6
AT5G58210 Arabidopsis thaliana HOM05D012436 ORTHO05D003476 1.9e-10 70.9 109 39.4
Thhalv10014108m.g Eutrema salsugineum HOM05D012436 ORTHO05D003476 1.9e-10 70.9 113 37.2
EL10Ac9g22929 Beta vulgaris HOM05D008057 ORTHO05D003476 3.2e-10 70.1 117 34.2
AUR62033080 Chenopodium quinoa HOM05D008057 ORTHO05D003476 3.2e-10 70.1 122 37.7
FAN08G2522 Fragaria x ananassa HOM05D015681 ORTHO05D003476 3.2e-10 70.1 79 49.4
MELO3C020667.2 Cucumis melo HOM05D008057 ORTHO05D003476 4.2e-10 69.7 278 24.8
Hund06726 Selenicereus undatus HOM05D008057 ORTHO05D003476 4.2e-10 69.7 119 37.0
C03p14510 Brassica napus HOM05D012436 ORTHO05D003476 5.4e-10 69.3 120 32.5
FvH4_5g27110 Fragaria vesca HOM05D015681 ORTHO05D003476 5.4e-10 69.3 109 40.4
HPP92_025600 Vanilla planifolia HOM05D061565 ORTHO05D003476 5.4e-10 69.3 305 29.2
BcaB01g04549 Brassica carinata HOM05D012436 ORTHO05D003476 7.1e-10 68.9 94 38.3
BolC3t13894H Brassica oleracea HOM05D012436 ORTHO05D003476 7.1e-10 68.9 94 38.3
vmacro12841 Vaccinium macrocarpon HOM05D008057 ORTHO05D003476 1.2e-09 68.2 225 29.8
Carub.0008s1875 Capsella rubella HOM05D012436 ORTHO05D003476 1.6e-09 67.8 157 29.3
Sed0002498 Sechium edule HOM05D008057 ORTHO05D003476 1.6e-09 67.8 293 24.6
ECA233G3433 Erigeron canadensis HOM05D006793 ORTHO05D003476 2.7e-09 67.0 84 35.7
BraA03t10548Z Brassica rapa HOM05D012436 ORTHO05D003476 3.5e-09 66.6 116 32.8
THA.LOC104805620 Tarenaya hassleriana HOM05D012436 ORTHO05D003476 6.0e-09 65.9 144 32.6
Sc12g0007990 Simmondsia chinensis HOM05D008057 ORTHO05D003476 1.7e-08 64.3 103 35.9
ATR1126G067 Amborella trichopoda HOM05D006793 ORTHO05D003476 2.3e-08 63.9 129 29.5
PSO801G0244 Papaver somniferum HOM05D006793 ORTHO05D003476 5.1e-08 62.8 84 34.5
Migut.F01893 Erythranthe guttata HOM05D006793 ORTHO05D003476 6.6e-08 62.4 125 32.0
PSO339G4934 Papaver somniferum HOM05D006793 ORTHO05D003476 6.6e-08 62.4 97 34.0
Solyc11g007850.2 Solanum lycopersicum HOM05D006793 ORTHO05D003476 6.6e-08 62.4 141 29.8
Nn2g13905 Nelumbo nucifera HOM05D006793 ORTHO05D003476 1.1e-07 61.6 112 30.4
Os12g0528000 Oryza sativa ssp. japonica HOM05D006793 ORTHO05D003476 1.1e-07 61.6 64 45.3
THA.LOC104824314 Tarenaya hassleriana HOM05D006793 ORTHO05D003476 1.1e-07 61.6 84 32.1
Zm00001eb248340 Zea mays HOM05D046263 ORTHO05D003476 1.1e-07 61.6 78 38.5
BcaB01g04480 Brassica carinata HOM05D012436 ORTHO05D003476 1.5e-07 61.2 166 33.1
CANSAT56G4476 Cannabis sativa HOM05D006793 ORTHO05D003476 1.5e-07 61.2 78 34.6
MBI17_g07069_MAGBIO Magnolia biondii HOM05D006793 ORTHO05D003476 1.5e-07 61.2 137 30.7
Sopen11g003710 Solanum pennellii HOM05D006793 ORTHO05D003476 2.5e-07 60.5 156 28.2
Carub.0005s1853 Capsella rubella HOM05D006793 ORTHO05D003476 3.3e-07 60.1 79 34.2
CARHR161930 Cardamine hirsuta HOM05D006793 ORTHO05D003476 3.3e-07 60.1 71 35.2
Ca_25286_v3 Cicer arietinum L. HOM05D008057 ORTHO05D003476 3.3e-07 60.1 105 37.1
Cc02_g10490 Coffea canephora HOM05D006793 ORTHO05D003476 3.3e-07 60.1 116 31.9
Haze_18401 Corylus avellana HOM05D008057 ORTHO05D003476 3.3e-07 60.1 42 61.9
FAN18G3766 Fragaria x ananassa HOM05D015681 ORTHO05D003476 3.3e-07 60.1 109 38.5
Zm00001eb410830 Zea mays HOM05D006793 ORTHO05D003476 3.3e-07 60.1 58 46.6
EL10Ac8g19653 Beta vulgaris HOM05D006793 ORTHO05D003476 4.3e-07 59.7 88 36.4
SEGI_29881 Sequoiadendron giganteum HOM05D006793 ORTHO05D003476 5.6e-07 59.3 77 41.6
PGSC0003DMG400027329 Solanum tuberosum HOM05D006793 ORTHO05D003476 5.6e-07 59.3 149 28.9
TAR633G2614 Trochodendron aralioides HOM05D006793 ORTHO05D009315 5.6e-07 59.3 87 33.3
Gohir.A01G128900 Gossypium hirsutum HOM05D006793 ORTHO05D003476 7.3e-07 58.9 78 35.9
Potri.008G029500 Populus trichocarpa HOM05D006793 ORTHO05D003476 7.3e-07 58.9 214 28.0
SGA_v2.0_scaffold62G21362 Striga asiatica HOM05D006793 ORTHO05D003476 7.3e-07 58.9 104 28.8
BcaC02g09274 Brassica carinata HOM05D006793 ORTHO05D003476 9.6e-07 58.5 71 35.2
C04p40750 Brassica napus HOM05D000992 ORTHO05D006704 9.6e-07 58.5 71 35.2
BolC4t25659H Brassica oleracea HOM05D000992 ORTHO05D006704 9.6e-07 58.5 71 35.2
TAR636G1084 Trochodendron aralioides HOM05D006793 ORTHO05D003476 9.6e-07 58.5 142 28.9
Aa31LG10G7260 Aethionema arabicum HOM05D000145 ORTHO05D003476 1.3e-06 58.2 88 34.1
AL5G32750 Arabidopsis lyrata HOM05D006793 ORTHO05D003476 1.3e-06 58.2 77 33.8
Psat6g174040 Pisum sativum HOM05D006793 ORTHO05D003476 1.3e-06 58.2 95 32.6
A03p48750 Brassica napus HOM05D006793 ORTHO05D003476 1.6e-06 57.8 86 32.6
BraA03t13975Z Brassica rapa HOM05D006793 ORTHO05D003476 1.6e-06 57.8 86 32.6
Lalb_Chr21g0313091 Lupinus albus HOM05D006793 ORTHO05D003476 1.6e-06 57.8 112 31.2
Nitab4.5_0006383g0010 Nicotiana tabacum HOM05D006793 ORTHO05D003476 1.6e-06 57.8 115 31.3
Sp5g10100 Schrenkiella parvula HOM05D006793 ORTHO05D003476 1.6e-06 57.8 71 35.2
GSVIVG01005025001 Vitis vinifera HOM05D006793 ORTHO05D003476 1.6e-06 57.8 78 34.6
AT3G52170 Arabidopsis thaliana HOM05D006793 ORTHO05D003476 2.1e-06 57.4 71 35.2
Nitab4.5_0000593g0350 Nicotiana tabacum HOM05D006793 ORTHO05D003476 2.1e-06 57.4 142 28.9
Thhalv10010306m.g Eutrema salsugineum HOM05D006793 ORTHO05D003476 2.8e-06 57.0 153 28.1
Hma1.2p1_0454F.1_g156300 Hydrangea macrophylla HOM05D006793 ORTHO05D003476 2.8e-06 57.0 78 35.9
Oeu060293.1 Olea europaea HOM05D006793 ORTHO05D003476 2.8e-06 57.0 230 27.8
Prupe.2G095200 Prunus persica HOM05D006793 ORTHO05D003476 2.8e-06 57.0 124 29.0
Sabra08G0019600 Salix brachista HOM05D006793 ORTHO05D003476 2.8e-06 57.0 206 26.7
arahy.Tifrunner.gnm1.ann1.BT04C1 Arachis hypogaea HOM05D006793 ORTHO05D003476 3.6e-06 56.6 171 26.3
CiPaw.01G264600 Carya illinoinensis HOM05D006793 ORTHO05D003476 3.6e-06 56.6 118 29.7
AUR62030173 Chenopodium quinoa HOM05D006793 ORTHO05D003476 3.6e-06 56.6 106 31.1
FAN13G2350 Fragaria x ananassa HOM05D015681 ORTHO05D003476 3.6e-06 56.6 42 59.5
Lalb_Chr02g0151171 Lupinus albus HOM05D006793 ORTHO05D003476 3.6e-06 56.6 78 34.6
Potri.010G231900 Populus trichocarpa HOM05D006793 ORTHO05D003476 3.6e-06 56.6 209 26.8
Sc20g0001440 Simmondsia chinensis HOM05D006793 ORTHO05D003476 3.6e-06 56.6 163 27.6
MSTRG.27506 Avicennia marina HOM05D006793 ORTHO05D003476 4.8e-06 56.2 78 34.6
Haze_16786 Corylus avellana HOM05D006793 ORTHO05D003476 4.8e-06 56.2 146 28.1
Lsat_1_v5_gn_8_22741 Lactuca sativa HOM05D006793 ORTHO05D003476 4.8e-06 56.2 202 26.2
Peaxi162Scf00321g00037 Petunia axillaris HOM05D006793 ORTHO05D003476 4.8e-06 56.2 123 30.9
Psat6g139960 Pisum sativum HOM05D003187 ORTHO05D003630 4.8e-06 56.2 98 37.8
Cpa.g.sc128.73 Carica papaya HOM05D006793 ORTHO05D003476 6.2e-06 55.8 142 27.5
Ciclev10031613m.g Citrus clementina HOM05D006793 ORTHO05D003476 6.2e-06 55.8 106 32.1
DCAR_019058 Daucus carota HOM05D006793 ORTHO05D003476 6.2e-06 55.8 96 31.2
Manes.07G093300 Manihot esculenta HOM05D006793 ORTHO05D003476 6.2e-06 55.8 209 26.3
Actinidia06714 Actinidia chinensis HOM05D006793 ORTHO05D003476 8.1e-06 55.5 200 24.5
A04p07200 Brassica napus HOM05D006793 ORTHO05D003476 8.1e-06 55.5 71 33.8
BraA04t16415Z Brassica rapa HOM05D000992 ORTHO05D006704 8.1e-06 55.5 121 28.1
Dinv31270 Davidia involucrata HOM05D006793 ORTHO05D003476 8.1e-06 55.5 121 28.9
Lsat_1_v5_gn_2_103100 Lactuca sativa HOM05D006793 ORTHO05D003476 8.1e-06 55.5 124 31.5
HPP92_027826 Vanilla planifolia HOM05D006793 ORTHO05D003476 8.1e-06 55.5 58 39.7


User provided reference genes

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