Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold14G06974 Striga asiatica HOM05D004702 ORTHO05D005505 9.3e-242 839.7 408 100.0
Oeu054792.1 Olea europaea HOM05D004702 ORTHO05D005505 4.1e-120 435.6 477 51.2
Oeu009775.1 Olea europaea HOM05D004702 ORTHO05D005505 5.5e-117 425.2 474 51.1
MSTRG.1063 Avicennia marina HOM05D004702 ORTHO05D005505 1.7e-105 387.1 481 49.9
Cc10_g04740 Coffea canephora HOM05D004702 ORTHO05D005505 2.2e-105 386.7 479 47.2
Dinv35933 Davidia involucrata HOM05D004702 ORTHO05D005505 4.8e-105 385.6 480 46.7
Thecc.08G002800 Theobroma cacao HOM05D004702 ORTHO05D005505 2.4e-104 383.3 472 46.0
Migut.C00543 Erythranthe guttata HOM05D004702 ORTHO05D005505 1.0e-102 377.9 495 43.4
Lsat_1_v5_gn_1_22040 Lactuca sativa HOM05D004702 ORTHO05D005505 1.0e-102 377.9 483 46.8
Hma1.2p1_0360F.1_g135770 Hydrangea macrophylla HOM05D004702 ORTHO05D005505 1.7e-102 377.1 473 47.1
Gorai.009G214400 Gossypium raimondii HOM05D004702 ORTHO05D005505 2.9e-102 376.3 478 45.6
Gohir.D05G207800 Gossypium hirsutum HOM05D004702 ORTHO05D005505 3.8e-102 375.9 478 45.6
Cpa.g.sc21.167 Carica papaya HOM05D004702 ORTHO05D005505 6.5e-102 375.2 467 46.0
DCAR_012789 Daucus carota HOM05D004702 ORTHO05D005505 1.1e-101 374.4 474 47.3
Gohir.A05G204600 Gossypium hirsutum HOM05D004702 ORTHO05D005505 1.1e-101 374.4 477 45.1
Manes.05G176200 Manihot esculenta HOM05D004702 ORTHO05D005505 1.1e-101 374.4 483 44.9
CAN.G1030.31 Capsicum annuum HOM05D004702 ORTHO05D005505 2.5e-101 373.2 487 43.9
Duzib093G1440 Durio zibethinus HOM05D004702 ORTHO05D005505 4.2e-101 372.5 474 44.5
COL.COLO4_03654 Corchorus olitorius HOM05D004702 ORTHO05D005505 5.5e-101 372.1 493 45.4
Nitab4.5_0000287g0020 Nicotiana tabacum HOM05D004702 ORTHO05D005505 4.0e-99 365.9 479 45.5
Actinidia22651 Actinidia chinensis HOM05D004702 ORTHO05D005505 1.2e-98 364.4 474 44.7
Lj4C62G3 Lonicera japonica HOM05D004702 ORTHO05D005505 1.2e-98 364.4 455 47.7
Duzib041G0633 Durio zibethinus HOM05D004702 ORTHO05D005505 4.4e-98 362.5 474 45.1
Manes.18G040500 Manihot esculenta HOM05D004702 ORTHO05D005505 4.4e-98 362.5 474 45.8
Nitab4.5_0005129g0020 Nicotiana tabacum HOM05D004702 ORTHO05D005505 7.5e-98 361.7 479 45.3
SalBow7G0327 Salvia bowleyana HOM05D004702 ORTHO05D005505 7.5e-98 361.7 473 43.6
Dinv39282 Davidia involucrata HOM05D004702 ORTHO05D005505 3.1e-96 356.3 436 48.6
CSS0001222 Camellia sinensis var. sinensis HOM05D004702 ORTHO05D005505 5.3e-96 355.5 442 47.1
Ciclev10001048m.g Citrus clementina HOM05D004702 ORTHO05D005505 7.0e-96 355.1 475 43.8
CANSAT25G0849 Cannabis sativa HOM05D004702 ORTHO05D005505 1.2e-95 354.4 479 44.1
Medtr3g102120 Medicago truncatula HOM05D004702 ORTHO05D005505 1.2e-95 354.4 467 43.0
SGA_v2.0_scaffold197G41020 Striga asiatica HOM05D004702 ORTHO05D005505 1.2e-95 354.4 428 48.6
HanXRQChr10g0286851 Helianthus annuus HOM05D004702 ORTHO05D005505 1.6e-95 354.0 467 45.6
Eucgr.F00191 Eucalyptus grandis HOM05D004702 ORTHO05D005505 7.7e-95 351.7 435 46.4
Potri.002G123800 Populus trichocarpa HOM05D004702 ORTHO05D005505 1.0e-94 351.3 476 44.3
TAR376G0323 Trochodendron aralioides HOM05D004702 ORTHO05D005505 1.0e-94 351.3 463 44.5
RcHm_v2.0_Chr6g0308391 Rosa chinensis HOM05D004702 ORTHO05D005505 1.7e-94 350.5 423 46.3
Potri.014G025000 Populus trichocarpa HOM05D004702 ORTHO05D005505 2.9e-94 349.7 455 44.8
PGR083G2110 Punica granatum HOM05D004702 ORTHO05D005505 5.0e-94 349.0 485 44.1
TWI56G0769 Tripterygium wilfordii HOM05D004702 ORTHO05D005505 8.5e-94 348.2 441 46.0
vmacro21496 Vaccinium macrocarpon HOM05D004702 ORTHO05D005505 1.9e-93 347.1 489 44.2
Phvul.009G067000 Phaseolus vulgaris HOM05D004702 ORTHO05D005505 2.5e-93 346.7 484 43.4
Glyma.06G042300 Glycine max HOM05D004702 ORTHO05D005505 1.6e-92 344.0 495 43.2
Medtr1g019040 Medicago truncatula HOM05D004702 ORTHO05D005505 1.6e-92 344.0 463 43.2
HanXRQChr09g0267191 Helianthus annuus HOM05D004702 ORTHO05D005505 2.7e-92 343.2 473 44.2
Prupe.1G431800 Prunus persica HOM05D004702 ORTHO05D005505 3.6e-92 342.8 469 42.6
Sabra02G0097200 Salix brachista HOM05D004702 ORTHO05D005505 3.6e-92 342.8 478 43.9
FAN24G1074 Fragaria x ananassa HOM05D004702 ORTHO05D005505 6.1e-92 342.0 477 44.2
FvH4_2g33990 Fragaria vesca HOM05D004702 ORTHO05D005505 8.0e-92 341.7 477 44.2
Solyc04g078630.3 Solanum lycopersicum HOM05D004702 ORTHO05D005505 8.0e-92 341.7 475 43.4
TAR381G0178 Trochodendron aralioides HOM05D004702 ORTHO05D005505 1.0e-91 341.3 418 47.1
VMungo1309G0408 Vigna mungo HOM05D004702 ORTHO05D005505 1.0e-91 341.3 486 43.2
PGSC0003DMG400008008 Solanum tuberosum HOM05D004702 ORTHO05D005505 1.4e-91 340.9 434 45.6
HanXRQChr04g0103941 Helianthus annuus HOM05D004702 ORTHO05D005505 1.8e-91 340.5 471 44.8
arahy.Tifrunner.gnm1.ann1.WJS3XD Arachis hypogaea HOM05D004702 ORTHO05D005505 4.0e-91 339.3 511 41.7
Sabra14G0017000 Salix brachista HOM05D004702 ORTHO05D005505 4.0e-91 339.3 469 42.6
arahy.Tifrunner.gnm1.ann1.L8L5ZS Arachis hypogaea HOM05D004702 ORTHO05D005505 1.2e-90 337.8 509 41.7
FAN20G1472 Fragaria x ananassa HOM05D004702 ORTHO05D005505 3.4e-90 336.3 482 44.2
ECA247G0009 Erigeron canadensis HOM05D004702 ORTHO05D005505 9.8e-90 334.7 481 44.3
FAN15G1938 Fragaria x ananassa HOM05D004702 ORTHO05D005505 9.8e-90 334.7 482 44.0
FAN27G2110 Fragaria x ananassa HOM05D004702 ORTHO05D005505 1.3e-89 334.3 480 44.0
HanXRQChr16g0509011 Helianthus annuus HOM05D004702 ORTHO05D005505 2.2e-89 333.6 465 44.3
Actinidia01089 Actinidia chinensis HOM05D004702 ORTHO05D005505 3.7e-89 332.8 430 46.5
Gorai.010G022200 Gossypium raimondii HOM05D004702 ORTHO05D005505 3.7e-89 332.8 394 47.5
Gohir.D06G019009 Gossypium hirsutum HOM05D004702 ORTHO05D005505 8.3e-89 331.6 394 47.2
Gohir.A06G020700 Gossypium hirsutum HOM05D004702 ORTHO05D005505 1.4e-88 330.9 394 47.0
MD15G1078600 Malus domestica HOM05D004702 ORTHO05D005505 1.4e-88 330.9 427 45.0
Migut.N02734 Erythranthe guttata HOM05D004702 ORTHO05D005505 5.4e-88 328.9 362 48.3
Sc02g0007400 Simmondsia chinensis HOM05D004702 ORTHO05D005505 1.6e-87 327.4 444 45.3
Atru.BG.237.p Acer truncatum HOM05D004702 ORTHO05D005505 2.7e-87 326.6 380 49.2
Glyma.17G239800 Glycine max HOM05D004702 ORTHO05D005505 2.7e-87 326.6 473 44.0
Sopen04g032210 Solanum pennellii HOM05D004702 ORTHO05D005505 3.5e-87 326.2 408 45.6
MD08G1095800 Malus domestica HOM05D004702 ORTHO05D005505 4.5e-87 325.9 428 45.1
TPR.G24175 Trifolium pratense HOM05D004702 ORTHO05D005505 4.5e-87 325.9 491 40.3
Aqoxy6G01249 Aquilegia oxysepala HOM05D004702 ORTHO05D005505 5.9e-87 325.5 406 45.8
ECA232G1346 Erigeron canadensis HOM05D004702 ORTHO05D005505 2.9e-86 323.2 471 42.3
Lj1g0008884 Lotus japonicus HOM05D004702 ORTHO05D005505 6.6e-86 322.0 479 42.6
Ca_15936_v3 Cicer arietinum L. HOM05D004702 ORTHO05D005505 1.5e-85 320.9 485 40.4
DCAR_019426 Daucus carota HOM05D004702 ORTHO05D005505 2.5e-85 320.1 467 42.8
Psat0s3591g0040 Pisum sativum HOM05D004702 ORTHO05D005505 3.3e-85 319.7 483 40.8
VMungo0647G1506 Vigna mungo HOM05D004702 ORTHO05D005505 9.5e-85 318.2 467 43.5
TPR.G3800 Trifolium pratense HOM05D004702 ORTHO05D005505 2.1e-84 317.0 475 40.0
Peaxi162Scf00882g00017 Petunia axillaris HOM05D004702 ORTHO05D005505 3.6e-84 316.2 461 44.0
Lj5g0017670 Lotus japonicus HOM05D004702 ORTHO05D005505 4.4e-82 309.3 428 43.9
Cfa009956 Carpinus fangiana HOM05D004702 ORTHO05D005505 1.3e-81 307.8 444 44.6
Haze_18055 Corylus avellana HOM05D004702 ORTHO05D005505 4.1e-80 302.8 452 43.4
Haze_18053 Corylus avellana HOM05D004702 ORTHO05D005505 7.0e-80 302.0 447 43.0
QL02p004185 Quercus lobata HOM05D004702 ORTHO05D005505 7.0e-80 302.0 476 40.5
THA.LOC104801428 Tarenaya hassleriana HOM05D004702 ORTHO05D005505 9.2e-80 301.6 479 39.5
Lalb_Chr14g0368541 Lupinus albus HOM05D004702 ORTHO05D005505 1.0e-78 298.1 461 41.4
Glyma.14G085000 Glycine max HOM05D004702 ORTHO05D005505 4.3e-77 292.7 433 43.0
unitig_8.g5031 Utricularia gibba HOM05D004702 ORTHO05D005505 4.3e-77 292.7 456 41.4
CiPaw.15G053800 Carya illinoinensis HOM05D004702 ORTHO05D005505 5.6e-77 292.4 462 40.9
MBI16_g04313_MAGBIO Magnolia biondii HOM05D004702 ORTHO05D005505 7.3e-77 292.0 483 38.9
SalBow6G2833 Salvia bowleyana HOM05D004702 ORTHO05D005505 1.6e-76 290.8 430 42.8
SalBow6G7027 Salvia bowleyana HOM05D004702 ORTHO05D005505 3.6e-76 289.7 430 42.6
PSO675G4695 Papaver somniferum HOM05D004702 ORTHO05D005505 8.9e-75 285.0 484 37.0
Phvul.001G024000 Phaseolus vulgaris HOM05D004702 ORTHO05D005505 2.2e-73 280.4 323 49.5
AUR62035465 Chenopodium quinoa HOM05D004702 ORTHO05D005505 8.3e-73 278.5 476 36.8
Hund05336 Selenicereus undatus HOM05D004702 ORTHO05D005505 1.1e-72 278.1 467 40.0
MELO3C016778.2 Cucumis melo HOM05D004702 ORTHO05D005505 1.4e-72 277.7 474 39.9
AL6G41200 Arabidopsis lyrata HOM05D004702 ORTHO05D005505 2.4e-72 276.9 476 37.2
PSO541G5103 Papaver somniferum HOM05D004702 ORTHO05D005505 2.4e-72 276.9 457 37.9
Aa31LG3G14060 Aethionema arabicum HOM05D004702 ORTHO05D005505 1.6e-71 274.2 475 37.3
EL10As7g23762 Beta vulgaris HOM05D004702 ORTHO05D005505 1.6e-71 274.2 392 42.3
CsaV3_4G034620 Cucumis sativus L. HOM05D004702 ORTHO05D005505 1.6e-71 274.2 470 39.4
Thhalv10028638m.g Eutrema salsugineum HOM05D004702 ORTHO05D005505 4.6e-71 272.7 478 37.4
Carub.0006s2627 Capsella rubella HOM05D004702 ORTHO05D005505 3.0e-70 270.0 473 38.1
Ah.05g167300 Amaranthus hybridus HOM05D004702 ORTHO05D005505 3.9e-70 269.6 431 39.7
C09p38410 Brassica napus HOM05D004702 ORTHO05D005505 6.6e-70 268.9 446 39.5
TAR625G0654 Trochodendron aralioides HOM05D004702 ORTHO05D005505 1.9e-69 267.3 397 38.3
ClCG05G020100 Citrullus lanatus HOM05D004702 ORTHO05D005505 1.2e-68 264.6 473 38.5
A10p08810 Brassica napus HOM05D004702 ORTHO05D005505 8.0e-68 261.9 477 37.1
BraSC37t46123Z Brassica rapa HOM05D004702 ORTHO05D005505 8.0e-68 261.9 477 37.1
Nn5g30368 Nelumbo nucifera HOM05D004702 ORTHO05D005505 3.1e-67 260.0 432 39.4
BcaB01g01331 Brassica carinata HOM05D004702 ORTHO05D005505 4.0e-67 259.6 479 37.2
Sed0014061 Sechium edule HOM05D004702 ORTHO05D005505 5.2e-67 259.2 389 41.1
GSVIVG01009450001 Vitis vinifera HOM05D004702 ORTHO05D005505 2.0e-66 257.3 200 63.0
Rhsim06G0053300 Rhododendron simsii HOM05D004702 ORTHO05D005505 1.3e-65 254.6 401 41.6
Ah.11g043030 Amaranthus hybridus HOM05D004702 ORTHO05D005505 1.4e-64 251.1 450 38.7
Haze_18006 Corylus avellana HOM05D004702 ORTHO05D005505 6.6e-62 242.3 354 42.7
Ca_13276_v3 Cicer arietinum L. HOM05D004702 ORTHO05D005505 2.5e-61 240.4 284 48.2
Atru.chr13.733 Acer truncatum HOM05D004702 ORTHO05D005505 1.6e-60 237.7 203 61.1
CDE01G0679 Ceratophyllum demersum HOM05D004702 ORTHO05D005505 1.8e-59 234.2 394 35.0
ATR0762G037 Amborella trichopoda HOM05D004702 ORTHO05D005505 2.6e-58 230.3 391 37.1
Lalb_Chr23g0267231 Lupinus albus HOM05D004702 ORTHO05D005505 5.8e-58 229.2 213 54.0
HPP92_017369 Vanilla planifolia HOM05D004702 ORTHO05D005505 6.4e-57 225.7 375 37.1
Lsat_1_v5_gn_4_127260 Lactuca sativa HOM05D004702 ORTHO05D005505 2.7e-55 220.3 195 60.5
Zm00001eb247120 Zea mays HOM05D004702 ORTHO05D005505 7.3e-53 212.2 396 33.1
SEGI_19446 Sequoiadendron giganteum HOM05D004702 ORTHO05D005505 1.4e-51 208.0 489 31.9
SEGI_05734 Sequoiadendron giganteum HOM05D004702 ORTHO05D005505 4.0e-51 206.5 483 31.1
HPP92_010365 Vanilla planifolia HOM05D004702 ORTHO05D005505 4.2e-48 196.4 432 33.3
SEGI_36308 Sequoiadendron giganteum HOM05D004702 ORTHO05D005505 4.6e-47 193.0 409 33.5
SEGI_03871 Sequoiadendron giganteum HOM05D004702 ORTHO05D005505 3.6e-44 183.3 491 31.4
arahy.Tifrunner.gnm1.ann1.7E6QIB Arachis hypogaea HOM05D004702 ORTHO05D005505 1.8e-43 181.0 165 55.8
arahy.Tifrunner.gnm1.ann1.7V26PZ Arachis hypogaea HOM05D004702 ORTHO05D005505 1.8e-43 181.0 165 55.8
AagrBONN_evm.TU.Sc2ySwM_228.394 Anthoceros agrestis HOM05D004702 ORTHO05D005505 6.9e-43 179.1 415 31.3
Psat0s3398g0240 Pisum sativum HOM05D004702 ORTHO05D005505 1.7e-41 174.5 164 53.0
Pp3c15_17100 Physcomitrium patens HOM05D004702 ORTHO05D005505 1.1e-40 171.8 417 30.9
SEGI_12847 Sequoiadendron giganteum HOM05D004702 ORTHO05D005505 4.6e-39 166.4 464 31.9
SMO112G0032 Selaginella moellendorffii HOM05D004702 ORTHO05D005505 6.2e-36 156.0 363 31.7
Sp6g10680 Schrenkiella parvula HOM05D004702 ORTHO05D005505 1.8e-35 154.5 170 48.2
CARHR264230 Cardamine hirsuta HOM05D004702 ORTHO05D005505 3.1e-35 153.7 170 48.8
AT4G06536 Arabidopsis thaliana HOM05D004702 ORTHO05D005505 6.9e-35 152.5 172 48.8
SMO145G0126 Selaginella moellendorffii HOM05D004702 ORTHO05D005505 8.4e-33 145.6 435 27.4
Os02g0614700 Oryza sativa ssp. japonica HOM05D004702 ORTHO05D005505 7.4e-29 132.5 161 41.6
AT4G06534 Arabidopsis thaliana HOM05D004702 ORTHO05D005505 1.6e-28 131.3 399 27.6
AUR62044709 Chenopodium quinoa HOM05D004702 ORTHO05D005505 4.8e-28 129.8 247 36.4
AUR62044714 Chenopodium quinoa HOM05D004702 ORTHO05D005505 4.8e-28 129.8 247 36.4
Nn7g37290 Nelumbo nucifera HOM05D004702 ORTHO05D005505 6.9e-27 125.9 152 42.8
Psat0s3398g0080 Pisum sativum HOM05D004702 ORTHO05D005505 1.5e-26 124.8 111 55.9
Sp6g10670 Schrenkiella parvula HOM05D004702 ORTHO05D005505 2.9e-25 120.6 305 32.5
CBR_g733 Chara braunii HOM05D004702 ORTHO05D005505 7.9e-15 85.9 253 27.3
SMO364G0277 Selaginella moellendorffii HOM05D051657 ORTHO05D005505 2.5e-13 80.9 141 32.6
SEGI_40713 Sequoiadendron giganteum HOM05D004702 ORTHO05D005505 1.3e-09 68.6 142 28.9
Glyma.15G095100 Glycine max HOM05D004702 ORTHO05D005505 2.5e-08 64.3 92 39.1


User provided reference genes

Program Settings