Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold14G06935 Striga asiatica HOM05D004288 ORTHO05D004997 4.0e-63 244.6 122 100.0
SalBow6G1935 Salvia bowleyana HOM05D004288 ORTHO05D004997 1.1e-23 113.6 122 54.1
SalBow8G0960 Salvia bowleyana HOM05D004288 ORTHO05D004997 1.1e-23 113.6 122 54.1
MSTRG.22227 Avicennia marina HOM05D004288 ORTHO05D004997 3.0e-18 95.5 114 47.4
Peaxi162Scf00081g01322 Petunia axillaris HOM05D004288 ORTHO05D004997 9.6e-17 90.5 114 45.6
Migut.C00495 Erythranthe guttata HOM05D004288 ORTHO05D004997 1.6e-16 89.7 120 50.0
Nitab4.5_0011511g0010 Nicotiana tabacum HOM05D004288 ORTHO05D004997 1.6e-16 89.7 130 45.4
Rhsim06G0060800 Rhododendron simsii HOM05D004288 ORTHO05D004997 2.1e-16 89.4 123 46.3
Nitab4.5_0000934g0110 Nicotiana tabacum HOM05D004288 ORTHO05D004997 3.1e-15 85.5 121 46.3
Actinidia22683 Actinidia chinensis HOM05D004288 ORTHO05D004997 2.0e-14 82.8 123 44.7
Nitab4.5_0000569g0070 Nicotiana tabacum HOM05D004288 ORTHO05D004997 2.0e-14 82.8 112 48.2
Oeu057368.1 Olea europaea HOM05D004288 ORTHO05D004997 2.0e-14 82.8 125 44.0
Atru.chr13.813 Acer truncatum HOM05D004288 ORTHO05D004997 2.6e-14 82.4 125 43.2
Solyc12g088410.3 Solanum lycopersicum HOM05D004288 ORTHO05D004997 2.6e-14 82.4 82 54.9
Actinidia10187 Actinidia chinensis HOM05D004288 ORTHO05D004997 3.4e-14 82.0 123 43.1
Solyc04g078010.4 Solanum lycopersicum HOM05D004288 ORTHO05D004997 4.5e-14 81.6 111 47.7
Dinv44970 Davidia involucrata HOM05D004288 ORTHO05D004997 7.6e-14 80.9 124 41.9
Sc02g0007800 Simmondsia chinensis HOM05D003189 ORTHO05D003449 9.9e-14 80.5 90 50.0
Actinidia38098 Actinidia chinensis HOM05D004288 ORTHO05D004997 1.7e-13 79.7 122 38.5
Nitab4.5_0014410g0020 Nicotiana tabacum HOM05D004288 ORTHO05D004997 2.2e-13 79.3 112 42.0
Migut.N02769 Erythranthe guttata HOM05D004288 ORTHO05D004997 3.8e-13 78.6 64 62.5
Sopen12g030390 Solanum pennellii HOM05D004288 ORTHO05D004997 3.8e-13 78.6 78 55.1
vmacro21447 Vaccinium macrocarpon HOM05D004288 ORTHO05D004997 3.8e-13 78.6 123 42.3
Sopen04g031610 Solanum pennellii HOM05D004288 ORTHO05D004997 4.9e-13 78.2 93 50.5
Cfa013675 Carpinus fangiana HOM05D004288 ORTHO05D004997 6.4e-13 77.8 118 44.1
PGSC0003DMG400021529 Solanum tuberosum HOM05D004288 ORTHO05D004997 1.1e-12 77.0 120 43.3
MSTRG.1030 Avicennia marina HOM05D004288 ORTHO05D004997 1.4e-12 76.6 118 45.8
CSS0005181 Camellia sinensis var. sinensis HOM05D004288 ORTHO05D004997 1.9e-12 76.3 134 39.6
Haze_22316 Corylus avellana HOM05D004288 ORTHO05D004997 2.4e-12 75.9 77 57.1
PGSC0003DMG401011559 Solanum tuberosum HOM05D004288 ORTHO05D004997 2.4e-12 75.9 67 58.2
Cc10_g05620 Coffea canephora HOM05D004288 ORTHO05D004997 3.2e-12 75.5 122 39.3
SalBow7G4748 Salvia bowleyana HOM05D004288 ORTHO05D004997 3.2e-12 75.5 130 40.8
CANSAT25G2350 Cannabis sativa HOM05D004288 ORTHO05D004997 4.2e-12 75.1 123 43.1
CSS0041913 Camellia sinensis var. sinensis HOM05D004288 ORTHO05D004997 9.3e-12 73.9 123 38.2
MD15G1071700 Malus domestica HOM05D004288 ORTHO05D004997 1.2e-11 73.6 123 38.2
EL10As7g23804 Beta vulgaris HOM05D004288 ORTHO05D004997 1.6e-11 73.2 120 40.0
Potri.014G017600 Populus trichocarpa HOM05D004288 ORTHO05D004997 2.1e-11 72.8 120 43.3
CAN.G107.3 Capsicum annuum HOM05D004288 ORTHO05D004997 2.7e-11 72.4 77 54.5
Duzib116G0008 Durio zibethinus HOM05D004288 ORTHO05D004997 2.7e-11 72.4 116 41.4
Gohir.A05G208400 Gossypium hirsutum HOM05D004288 ORTHO05D004997 3.5e-11 72.0 116 39.7
Gohir.D06G020400 Gossypium hirsutum HOM05D004288 ORTHO05D004997 4.6e-11 71.6 111 49.5
Thecc.08G091000 Theobroma cacao HOM05D004288 ORTHO05D004997 4.6e-11 71.6 115 40.9
CiPaw.07G176600 Carya illinoinensis HOM05D004288 ORTHO05D004997 7.9e-11 70.9 119 40.3
TAR376G0993 Trochodendron aralioides HOM05D004288 ORTHO05D004997 1.0e-10 70.5 118 37.3
Ah.05g167180 Amaranthus hybridus HOM05D004288 ORTHO05D004997 1.3e-10 70.1 125 40.0
Gohir.D05G211900 Gossypium hirsutum HOM05D004288 ORTHO05D004997 1.3e-10 70.1 116 38.8
Gorai.009G218500 Gossypium raimondii HOM05D004288 ORTHO05D004997 1.3e-10 70.1 116 38.8
Gorai.010G024900 Gossypium raimondii HOM05D004288 ORTHO05D004997 1.3e-10 70.1 111 49.5
Hma1.2p1_0210F.1_g089620 Hydrangea macrophylla HOM05D004288 ORTHO05D004997 1.3e-10 70.1 85 49.4
Peaxi162Scf00160g00120 Petunia axillaris HOM05D004288 ORTHO05D004997 1.3e-10 70.1 73 50.7
Rhsim07G0221200 Rhododendron simsii HOM05D004288 ORTHO05D004997 1.3e-10 70.1 71 50.7
GSVIVG01009362001 Vitis vinifera HOM05D004288 ORTHO05D004997 1.3e-10 70.1 75 52.0
Eucgr.F00116 Eucalyptus grandis HOM05D004288 ORTHO05D004997 1.8e-10 69.7 117 40.2
Hma1.2p1_0819F.1_g223820 Hydrangea macrophylla HOM05D004288 ORTHO05D004997 1.8e-10 69.7 75 54.7
ECA232G2356 Erigeron canadensis HOM05D004288 ORTHO05D004997 2.3e-10 69.3 122 39.3
Hund14391 Selenicereus undatus HOM05D004288 ORTHO05D004997 2.3e-10 69.3 56 62.5
DCAR_012811 Daucus carota HOM05D004288 ORTHO05D004997 3.9e-10 68.6 55 58.2
Gohir.A06G023200 Gossypium hirsutum HOM05D004288 ORTHO05D004997 3.9e-10 68.6 121 46.3
Dinv39247 Davidia involucrata HOM05D004288 ORTHO05D004997 5.1e-10 68.2 112 42.0
TWI12G0116 Tripterygium wilfordii HOM05D004288 ORTHO05D004997 6.7e-10 67.8 120 39.2
Aqoxy6G02704 Aquilegia oxysepala HOM05D004288 ORTHO05D004997 8.7e-10 67.4 67 50.7
CiPaw.08G113500 Carya illinoinensis HOM05D004288 ORTHO05D004997 1.1e-09 67.0 75 50.7
CiPaw.08G049000 Carya illinoinensis HOM05D004288 ORTHO05D004997 1.9e-09 66.2 78 48.7
Ciclev10002881m.g Citrus clementina HOM05D004288 ORTHO05D004997 1.9e-09 66.2 120 39.2
FvH4_2g33280 Fragaria vesca HOM05D004288 ORTHO05D004997 1.9e-09 66.2 73 49.3
FAN24G2538 Fragaria x ananassa HOM05D004288 ORTHO05D004997 1.9e-09 66.2 73 49.3
FAN27G1232 Fragaria x ananassa HOM05D004288 ORTHO05D004997 1.9e-09 66.2 73 49.3
MD08G1087000 Malus domestica HOM05D004288 ORTHO05D004997 1.9e-09 66.2 125 36.0
Sabra14G0011500 Salix brachista HOM05D004288 ORTHO05D004997 1.9e-09 66.2 85 49.4
THA.LOC104825767 Tarenaya hassleriana HOM05D004288 ORTHO05D004997 1.9e-09 66.2 110 37.3
Duzib041G0778 Durio zibethinus HOM05D004288 ORTHO05D004997 2.5e-09 65.9 113 39.8
FAN20G2816 Fragaria x ananassa HOM05D004288 ORTHO05D004997 2.5e-09 65.9 73 47.9
HanXRQChr09g0266571 Helianthus annuus HOM05D004288 ORTHO05D004997 2.5e-09 65.9 122 38.5
MBI16_g22811_MAGBIO Magnolia biondii HOM05D004288 ORTHO05D004997 4.3e-09 65.1 127 40.2
CDE06G1799 Ceratophyllum demersum HOM05D004288 ORTHO05D004997 7.4e-09 64.3 105 36.2
TAR628G0045 Trochodendron aralioides HOM05D004288 ORTHO05D004997 9.6e-09 63.9 123 34.1
TWI56G0562 Tripterygium wilfordii HOM05D004288 ORTHO05D004997 1.3e-08 63.5 67 52.2
Lsat_1_v5_gn_4_130821 Lactuca sativa HOM05D004288 ORTHO05D004997 1.6e-08 63.2 123 37.4
CiPaw.13G085100 Carya illinoinensis HOM05D004288 ORTHO05D004997 2.1e-08 62.8 78 47.4
FAN15G0972 Fragaria x ananassa HOM05D004288 ORTHO05D004997 2.1e-08 62.8 73 47.9
Manes.18G045000 Manihot esculenta HOM05D004288 ORTHO05D004997 2.1e-08 62.8 97 42.3
QL12p037641 Quercus lobata HOM05D004288 ORTHO05D004997 2.1e-08 62.8 68 48.5
AT5G01075 Arabidopsis thaliana HOM05D004288 ORTHO05D004997 2.8e-08 62.4 53 62.3
ClCG05G020480 Citrullus lanatus HOM05D004288 ORTHO05D004997 2.8e-08 62.4 49 57.1
PSO541G1266 Papaver somniferum HOM05D004288 ORTHO05D004997 2.8e-08 62.4 46 60.9
COL.COLO4_28524 Corchorus olitorius HOM05D004288 ORTHO05D004997 3.7e-08 62.0 76 50.0
VMungo0647G1736 Vigna mungo HOM05D004288 ORTHO05D004997 3.7e-08 62.0 64 53.1
Carub.0006s0080 Capsella rubella HOM05D004288 ORTHO05D004997 4.8e-08 61.6 50 62.0
CDE04G1463 Ceratophyllum demersum HOM05D004288 ORTHO05D004997 4.8e-08 61.6 73 45.2
Prupe.1G424700 Prunus persica HOM05D004288 ORTHO05D004997 4.8e-08 61.6 125 36.8
TAR636G2516 Trochodendron aralioides HOM05D004288 ORTHO05D004997 4.8e-08 61.6 65 47.7
CDE04G1843 Ceratophyllum demersum HOM05D004288 ORTHO05D004997 6.2e-08 61.2 44 56.8
MELO3C032376.2 Cucumis melo HOM05D004288 ORTHO05D004997 6.2e-08 61.2 53 52.8
Thhalv10015166m.g Eutrema salsugineum HOM05D004288 ORTHO05D004997 6.2e-08 61.2 49 59.2
unitig_8.g4880 Utricularia gibba HOM05D004288 ORTHO05D004997 6.2e-08 61.2 70 47.1
Cpa.g.sc21.102 Carica papaya HOM05D004288 ORTHO05D004997 8.1e-08 60.8 117 35.0
Nn1g04602 Nelumbo nucifera HOM05D004288 ORTHO05D004997 1.1e-07 60.5 125 37.6
Sed0012219 Sechium edule HOM05D004288 ORTHO05D004997 1.1e-07 60.5 79 41.8
CANSAT54G1812 Cannabis sativa HOM05D004288 ORTHO05D004997 1.4e-07 60.1 59 49.2
CsaV3_4G034910 Cucumis sativus L. HOM05D004288 ORTHO05D003449 1.4e-07 60.1 69 49.3
PGR031G3267 Punica granatum HOM05D004288 ORTHO05D004997 1.4e-07 60.1 72 45.8
RcHm_v2.0_Chr6g0309361 Rosa chinensis HOM05D004288 ORTHO05D004997 1.4e-07 60.1 73 46.6
THA.LOC104801605 Tarenaya hassleriana HOM05D004288 ORTHO05D004997 1.4e-07 60.1 60 45.0
ECA246G3669 Erigeron canadensis HOM05D002841 ORTHO05D003158 2.4e-07 59.3 60 53.3
ClCG05G020460 Citrullus lanatus HOM05D004288 ORTHO05D004997 3.1e-07 58.9 50 58.0
Glyma.14G087800 Glycine max HOM05D004288 ORTHO05D004997 3.1e-07 58.9 120 37.5
HanXRQChr01g0027971 Helianthus annuus HOM05D004288 ORTHO05D004997 3.1e-07 58.9 62 54.8
BraA02t04704Z Brassica rapa HOM05D004288 ORTHO05D004997 4.0e-07 58.5 48 58.3
MELO3C016806.2 Cucumis melo HOM05D004288 ORTHO05D004997 4.0e-07 58.5 70 47.1
Phvul.001G026500 Phaseolus vulgaris HOM05D004288 ORTHO05D004997 4.0e-07 58.5 122 37.7
BcaC03g13064 Brassica carinata HOM05D004288 ORTHO05D004997 5.3e-07 58.2 48 56.2
C02p00310 Brassica napus HOM05D004288 ORTHO05D004997 5.3e-07 58.2 48 56.2
HanXRQChr11g0341661 Helianthus annuus HOM05D004288 ORTHO05D004997 5.3e-07 58.2 78 46.2
VMungo0647G1919 Vigna mungo HOM05D004288 ORTHO05D004997 5.3e-07 58.2 122 39.3
CiPaw.04G152800 Carya illinoinensis HOM05D004288 ORTHO05D004997 6.9e-07 57.8 69 50.7
Sp6g40470 Schrenkiella parvula HOM05D004288 ORTHO05D004997 6.9e-07 57.8 41 63.4
Sed0005367 Sechium edule HOM05D004288 ORTHO05D004997 9.0e-07 57.4 49 53.1
TPR.G3776 Trifolium pratense HOM05D004288 ORTHO05D004997 9.0e-07 57.4 71 47.9
GSVIVG01037855001 Vitis vinifera HOM05D004288 ORTHO05D004997 9.0e-07 57.4 120 35.8
Os03g0206201 Oryza sativa ssp. japonica HOM05D004288 ORTHO05D004997 1.2e-06 57.0 69 47.8
BcaB05g21897 Brassica carinata HOM05D004288 ORTHO05D004997 1.5e-06 56.6 50 58.0
TAR381G1169 Trochodendron aralioides HOM05D004288 ORTHO05D004997 1.5e-06 56.6 58 48.3
BolC2t06031H Brassica oleracea HOM05D004288 ORTHO05D004997 2.6e-06 55.8 48 54.2
Glyma.17G236500 Glycine max HOM05D004288 ORTHO05D004997 2.6e-06 55.8 120 36.7
Lsat_1_v5_gn_6_112441 Lactuca sativa HOM05D004288 ORTHO05D004997 3.4e-06 55.5 43 60.5
Sed0026714 Sechium edule HOM05D004288 ORTHO05D004997 4.5e-06 55.1 49 57.1
Zm00001eb007460 Zea mays HOM05D004288 ORTHO05D004997 4.5e-06 55.1 104 33.7
SGA_v2.0_scaffold238G43969 Striga asiatica HOM05D004288 ORTHO05D004997 5.8e-06 54.7 112 34.8
AL6G11150 Arabidopsis lyrata HOM05D004288 ORTHO05D004997 7.6e-06 54.3 39 61.5
Phvul.001G026400 Phaseolus vulgaris HOM05D004288 ORTHO05D004997 7.6e-06 54.3 117 36.8
DCAR_020077 Daucus carota HOM05D004288 ORTHO05D004997 1.0e-05 53.9 47 48.9


User provided reference genes

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