Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold14G06920 Striga asiatica HOM05D004215 ORTHO05D005293 3.8e-174 614.8 313 100.0
MSTRG.13568 Avicennia marina HOM05D004215 ORTHO05D005293 2.4e-128 462.6 313 75.4
Migut.E00397 Erythranthe guttata HOM05D004215 ORTHO05D005293 3.0e-123 445.7 315 74.0
SalBow8G1964 Salvia bowleyana HOM05D004215 ORTHO05D005293 2.2e-121 439.5 292 77.4
MSTRG.2195 Avicennia marina HOM05D004215 ORTHO05D005293 1.3e-118 430.3 313 73.8
Nitab4.5_0000293g0040 Nicotiana tabacum HOM05D004215 ORTHO05D005293 9.7e-114 414.1 309 71.2
Migut.L00828 Erythranthe guttata HOM05D004215 ORTHO05D005293 1.7e-113 413.3 284 72.2
Migut.L00651 Erythranthe guttata HOM05D004215 ORTHO05D005293 1.2e-111 407.1 285 71.9
Peaxi162Scf00205g00925 Petunia axillaris HOM05D004215 ORTHO05D005293 3.5e-111 405.6 315 69.8
Sopen05g004280 Solanum pennellii HOM05D004215 ORTHO05D005293 4.5e-111 405.2 309 70.6
Solyc05g008450.3 Solanum lycopersicum HOM05D004215 ORTHO05D005293 5.9e-111 404.8 309 70.2
unitig_699.g19481 Utricularia gibba HOM05D004215 ORTHO05D005293 8.5e-110 401.0 288 70.1
Oeu004319.1 Olea europaea HOM05D004215 ORTHO05D005293 1.5e-109 400.2 263 76.0
PGSC0003DMG400030559 Solanum tuberosum HOM05D004215 ORTHO05D005293 1.9e-109 399.8 316 69.3
Dinv16170 Davidia involucrata HOM05D004215 ORTHO05D005293 1.6e-108 396.7 287 71.4
CAN.G1489.9 Capsicum annuum HOM05D004215 ORTHO05D005293 2.0e-106 389.8 300 69.3
CSS0048780 Camellia sinensis var. sinensis HOM05D004215 ORTHO05D005293 9.7e-106 387.5 307 68.1
SGA_v2.0_scaffold50G18535 Striga asiatica HOM05D004215 ORTHO05D005293 1.3e-105 387.1 304 67.4
RcHm_v2.0_Chr4g0433881 Rosa chinensis HOM05D004215 ORTHO05D005293 6.3e-105 384.8 290 69.0
COL.COLO4_15325 Corchorus olitorius HOM05D004215 ORTHO05D005293 1.1e-104 384.0 297 69.0
Prupe.1G320800 Prunus persica HOM05D004215 ORTHO05D005293 1.1e-104 384.0 286 68.5
Cfa015796 Carpinus fangiana HOM05D004215 ORTHO05D005293 1.8e-104 383.3 315 66.3
Nitab4.5_0000350g0220 Nicotiana tabacum HOM05D004215 ORTHO05D005293 1.8e-104 383.3 309 68.6
Eucgr.B02879 Eucalyptus grandis HOM05D004215 ORTHO05D005293 7.0e-104 381.3 310 66.1
Manes.14G110200 Manihot esculenta HOM05D004215 ORTHO05D005293 9.1e-104 380.9 293 69.6
FvH4_4g26280 Fragaria vesca HOM05D004215 ORTHO05D005293 1.2e-103 380.6 296 67.6
FAN12G1757 Fragaria x ananassa HOM05D004215 ORTHO05D005293 1.2e-103 380.6 296 67.6
TWI79G1401 Tripterygium wilfordii HOM05D004215 ORTHO05D005293 1.6e-103 380.2 312 64.4
FAN12G4108 Fragaria x ananassa HOM05D004215 ORTHO05D005293 2.7e-103 379.4 296 67.6
MD16G1033500 Malus domestica HOM05D004215 ORTHO05D005293 2.7e-103 379.4 289 67.5
CiPaw.06G014700 Carya illinoinensis HOM05D004215 ORTHO05D005293 3.5e-103 379.0 309 67.3
TAR629G2922 Trochodendron aralioides HOM05D004215 ORTHO05D005293 4.5e-103 378.6 306 65.4
Gohir.D05G319000 Gossypium hirsutum HOM05D004215 ORTHO05D005293 7.7e-103 377.9 291 69.4
Gorai.009G341900 Gossypium raimondii HOM05D004215 ORTHO05D005293 7.7e-103 377.9 291 69.4
MD13G1031300 Malus domestica HOM05D004215 ORTHO05D005293 1.0e-102 377.5 313 64.5
FAN22G1507 Fragaria x ananassa HOM05D004215 ORTHO05D005293 1.3e-102 377.1 298 67.8
FAN17G1658 Fragaria x ananassa HOM05D004215 ORTHO05D005293 2.9e-102 375.9 308 64.6
Psat6g222520 Pisum sativum HOM05D004215 ORTHO05D005293 2.9e-102 375.9 303 65.7
Ciclev10016124m.g Citrus clementina HOM05D004215 ORTHO05D005293 5.0e-102 375.2 301 63.8
Thecc.02G217400 Theobroma cacao HOM05D004215 ORTHO05D005293 5.0e-102 375.2 317 65.3
Lsat_1_v5_gn_8_41661 Lactuca sativa HOM05D004215 ORTHO05D005293 8.5e-102 374.4 315 65.1
HanXRQChr15g0466211 Helianthus annuus HOM05D004215 ORTHO05D005293 1.9e-101 373.2 277 69.3
DCAR_023619 Daucus carota HOM05D004215 ORTHO05D005293 5.5e-101 371.7 276 69.9
AL1G27210 Arabidopsis lyrata HOM05D004215 ORTHO05D005293 9.4e-101 370.9 287 67.2
Potri.008G126700 Populus trichocarpa HOM05D004215 ORTHO05D005293 9.4e-101 370.9 274 70.1
Carub.0001s1491 Capsella rubella HOM05D004215 ORTHO05D005293 1.2e-100 370.5 287 67.2
CiPaw.05G246100 Carya illinoinensis HOM05D004215 ORTHO05D005293 1.2e-100 370.5 295 66.1
Potri.010G116500 Populus trichocarpa HOM05D004215 ORTHO05D005293 1.2e-100 370.5 308 65.6
Actinidia36693 Actinidia chinensis HOM05D004215 ORTHO05D005293 3.6e-100 369.0 273 68.5
CARHR015680 Cardamine hirsuta HOM05D004215 ORTHO05D005293 4.7e-100 368.6 287 66.9
Phvul.007G035000 Phaseolus vulgaris HOM05D004215 ORTHO05D005293 6.1e-100 368.2 293 66.9
TWI31G0297 Tripterygium wilfordii HOM05D004215 ORTHO05D005293 6.1e-100 368.2 312 64.1
Thhalv10008333m.g Eutrema salsugineum HOM05D004215 ORTHO05D005293 8.0e-100 367.9 301 65.1
VMungo0720G1296 Vigna mungo HOM05D004215 ORTHO05D005293 8.0e-100 367.9 299 64.9
Actinidia31987 Actinidia chinensis HOM05D004215 ORTHO05D005293 1.0e-99 367.5 267 70.0
CSS0000916 Camellia sinensis var. sinensis HOM05D004215 ORTHO05D005293 1.4e-99 367.1 315 63.8
Glyma.10G267000 Glycine max HOM05D004215 ORTHO05D005293 1.4e-99 367.1 292 66.1
AT1G15140 Arabidopsis thaliana HOM05D004215 ORTHO05D005293 1.8e-99 366.7 287 65.2
FAN07G0674 Fragaria x ananassa HOM05D004215 ORTHO05D005293 2.3e-99 366.3 320 63.8
THA.LOC104805048 Tarenaya hassleriana HOM05D004215 ORTHO05D005293 3.0e-99 365.9 296 64.2
CANSAT01G2004 Cannabis sativa HOM05D004215 ORTHO05D005293 4.0e-99 365.5 307 63.2
Glyma.20G123700 Glycine max HOM05D004215 ORTHO05D005293 4.0e-99 365.5 267 70.0
Cpa.g.sc65.98 Carica papaya HOM05D004215 ORTHO05D005293 5.2e-99 365.2 267 69.7
BcaC07g38770 Brassica carinata HOM05D004215 ORTHO05D005293 6.8e-99 364.8 295 65.4
C08p17030 Brassica napus HOM05D004215 ORTHO05D005293 6.8e-99 364.8 295 65.4
Aa31LG1G20 Aethionema arabicum HOM05D004215 ORTHO05D005293 8.8e-99 364.4 305 63.0
Rhsim09G0069000 Rhododendron simsii HOM05D004215 ORTHO05D005293 8.8e-99 364.4 258 69.8
BcaB03g13074 Brassica carinata HOM05D004215 ORTHO05D005293 1.5e-98 363.6 306 62.1
Lj3A876G45 Lonicera japonica HOM05D004215 ORTHO05D005293 1.5e-98 363.6 276 69.2
Lj5g0023519 Lotus japonicus HOM05D004215 ORTHO05D005293 2.0e-98 363.2 267 68.9
BolC8t49328H Brassica oleracea HOM05D004215 ORTHO05D005293 3.4e-98 362.5 294 64.6
ClCG05G022300 Citrullus lanatus HOM05D004215 ORTHO05D005293 5.7e-98 361.7 317 60.9
Atru.chr11.354 Acer truncatum HOM05D004215 ORTHO05D005293 9.8e-98 360.9 304 62.8
BolC5t30064H Brassica oleracea HOM05D004215 ORTHO05D005293 9.8e-98 360.9 290 64.1
ECA233G2791 Erigeron canadensis HOM05D004215 ORTHO05D005293 9.8e-98 360.9 278 68.7
BcaC05g25445 Brassica carinata HOM05D004215 ORTHO05D005293 1.3e-97 360.5 277 66.4
C05p13270 Brassica napus HOM05D004215 ORTHO05D005293 1.3e-97 360.5 277 66.4
Duzib251G0621 Durio zibethinus HOM05D004215 ORTHO05D005293 1.7e-97 360.1 293 65.5
A08p31720 Brassica napus HOM05D004215 ORTHO05D005293 6.3e-97 358.2 307 62.2
BraA08t35094Z Brassica rapa HOM05D004215 ORTHO05D005293 6.3e-97 358.2 307 62.2
BraA06t24295Z Brassica rapa HOM05D004215 ORTHO05D005293 8.3e-97 357.8 289 65.1
arahy.Tifrunner.gnm1.ann1.BMT3C6 Arachis hypogaea HOM05D004215 ORTHO05D005293 1.1e-96 357.5 278 65.8
A06p11150 Brassica napus HOM05D004215 ORTHO05D005293 1.4e-96 357.1 277 65.7
QL01p002798 Quercus lobata HOM05D004215 ORTHO05D005293 1.8e-96 356.7 335 59.1
arahy.Tifrunner.gnm1.ann1.IPKA5V Arachis hypogaea HOM05D004215 ORTHO05D005293 2.4e-96 356.3 278 65.5
Hund25007 Selenicereus undatus HOM05D004215 ORTHO05D005293 2.4e-96 356.3 294 63.6
Sed0020304 Sechium edule HOM05D004215 ORTHO05D005293 4.1e-96 355.5 307 60.6
Lalb_Chr06g0165701 Lupinus albus HOM05D004215 ORTHO05D005293 1.2e-95 354.0 309 60.5
Actinidia14939 Actinidia chinensis HOM05D004215 ORTHO05D005293 3.5e-95 352.4 267 65.9
MELO3C012293.2 Cucumis melo HOM05D004215 ORTHO05D005293 7.7e-95 351.3 302 60.9
CsaV3_5G034820 Cucumis sativus L. HOM05D004215 ORTHO05D005293 7.7e-95 351.3 309 60.2
Sc14g0007220 Simmondsia chinensis HOM05D004215 ORTHO05D005293 1.3e-94 350.5 264 67.8
EL10Ac6g14267 Beta vulgaris HOM05D004215 ORTHO05D005293 1.1e-93 347.4 289 64.0
Haze_00697 Corylus avellana HOM05D004215 ORTHO05D005293 9.5e-93 344.4 328 60.7
PSO017G7108 Papaver somniferum HOM05D004215 ORTHO05D005293 9.5e-93 344.4 271 64.2
PSO478G0614 Papaver somniferum HOM05D004215 ORTHO05D005293 9.5e-93 344.4 271 64.6
MBI16_g21171_MAGBIO Magnolia biondii HOM05D004215 ORTHO05D005293 3.6e-92 342.4 308 63.0
AUR62014123 Chenopodium quinoa HOM05D004215 ORTHO05D005293 1.8e-91 340.1 277 64.3
Sabra10G0086200 Salix brachista HOM05D004215 ORTHO05D005293 5.2e-91 338.6 290 64.1
Sabra10G0087900 Salix brachista HOM05D004215 ORTHO05D005293 5.2e-91 338.6 290 64.1
Lalb_Chr17g0338761 Lupinus albus HOM05D004215 ORTHO05D005293 1.2e-90 337.4 278 63.7
BcaB02g06582 Brassica carinata HOM05D004215 ORTHO05D005293 1.4e-88 330.5 246 66.3
PGR102G1684 Punica granatum HOM05D004215 ORTHO05D005293 1.8e-88 330.1 281 62.3
HPP92_021849 Vanilla planifolia HOM05D004215 ORTHO05D005293 1.8e-88 330.1 316 57.6
Medtr1g108710 Medicago truncatula HOM05D004215 ORTHO05D005293 1.2e-87 327.4 264 64.4
CDE06G1149 Ceratophyllum demersum HOM05D004215 ORTHO05D005293 3.5e-87 325.9 278 61.5
Sed0017516 Sechium edule HOM05D004215 ORTHO05D005293 4.5e-87 325.5 310 57.1
AUR62002761 Chenopodium quinoa HOM05D004215 ORTHO05D005293 1.3e-86 323.9 246 66.3
Aqoxy3G00166 Aquilegia oxysepala HOM05D004215 ORTHO05D005293 8.6e-86 321.2 287 60.3
Sp1g13480 Schrenkiella parvula HOM05D004215 ORTHO05D005293 1.1e-85 320.9 290 58.6
Nn4g24046 Nelumbo nucifera HOM05D004215 ORTHO05D005293 2.5e-85 319.7 267 64.0
DCAR_030188 Daucus carota HOM05D004215 ORTHO05D005293 3.6e-84 315.8 272 62.5
PGR119G1032 Punica granatum HOM05D004215 ORTHO05D005293 1.8e-83 313.5 274 59.1
Hma1.2p1_0114F.1_g055430 Hydrangea macrophylla HOM05D004215 ORTHO05D005293 2.6e-82 309.7 256 64.8
SEGI_29541 Sequoiadendron giganteum HOM05D004215 ORTHO05D005293 2.0e-79 300.1 316 51.9
Os02g0328300 Oryza sativa ssp. japonica HOM05D004215 ORTHO05D005293 3.0e-78 296.2 297 55.6
AagrBONN_evm.TU.Sc2ySwM_228.3165 Anthoceros agrestis HOM05D004215 ORTHO05D005293 7.3e-77 291.6 268 57.1
SHI16315 Sapria himalayana HOM05D004215 ORTHO05D005293 5.2e-75 285.4 246 60.2
SMO174G0012 Selaginella moellendorffii HOM05D004215 ORTHO05D005293 4.4e-74 282.3 251 57.4
ATR0691G234 Amborella trichopoda HOM05D004215 ORTHO05D005293 7.5e-74 281.6 272 55.1
Mapoly0004s0030 Marchantia polymorpha HOM05D004215 ORTHO05D005293 1.7e-73 280.4 276 54.3
Pp3c16_22650 Physcomitrium patens HOM05D004215 ORTHO05D005293 1.9e-72 276.9 269 55.0
CDE04G0818 Ceratophyllum demersum HOM05D004215 ORTHO05D005293 3.6e-68 262.7 313 49.5
Actinidia33607 Actinidia chinensis HOM05D004215 ORTHO05D005293 1.4e-67 260.8 313 47.3
Gohir.A05G317200 Gossypium hirsutum HOM05D004215 ORTHO05D005293 2.1e-63 246.9 211 65.4
Ca_23697_v3 Cicer arietinum L. HOM05D004215 ORTHO05D005293 1.5e-61 240.7 187 66.3
Zm00001eb121490 Zea mays HOM05D004215 ORTHO05D005293 3.1e-59 233.0 287 46.7
Cc11_g09170 Coffea canephora HOM05D004215 ORTHO05D005293 1.3e-57 227.6 152 75.7
GSVIVG01011796001 Vitis vinifera HOM05D004215 ORTHO05D005293 1.3e-57 227.6 152 75.0
Actinidia15237 Actinidia chinensis HOM05D004215 ORTHO05D005293 4.9e-57 225.7 194 59.8
Zm00001eb241500 Zea mays HOM05D004215 ORTHO05D005293 1.9e-56 223.8 231 52.4
Lj6A750T89 Lonicera japonica HOM05D004215 ORTHO05D005293 7.1e-56 221.9 152 71.7
Os01g0120600 Oryza sativa ssp. japonica HOM05D004215 ORTHO05D005293 2.4e-51 206.8 224 48.7
vmacro01429 Vaccinium macrocarpon HOM05D004215 ORTHO05D005293 5.1e-46 189.1 118 78.8
vmacro01428 Vaccinium macrocarpon HOM05D004215 ORTHO05D005293 1.9e-45 187.2 130 68.5
Actinidia33626 Actinidia chinensis HOM05D004215 ORTHO05D005293 3.3e-45 186.4 193 54.4
Actinidia33606 Actinidia chinensis HOM05D004215 ORTHO05D005293 4.3e-45 186.0 295 39.0
TPR.G4918 Trifolium pratense HOM05D004215 ORTHO05D005293 4.3e-45 186.0 113 81.4
BolC5t33841H Brassica oleracea HOM05D004215 ORTHO05D005293 3.2e-40 169.9 139 64.0
Cre01.g000350 Chlamydomonas reinhardtii HOM05D004215 ORTHO05D005293 1.2e-39 167.9 253 42.7
Actinidia16703 Actinidia chinensis HOM05D004215 ORTHO05D005293 1.0e-38 164.9 235 43.4
MCO13G089 Micromonas commoda HOM05D004215 ORTHO05D005293 2.2e-33 147.1 250 39.2
CBR_g23714 Chara braunii HOM05D004215 ORTHO05D005293 8.4e-33 145.2 298 35.6
MBI10_g46302_MAGBIO Magnolia biondii HOM05D004215 ORTHO05D005293 2.8e-28 130.2 84 73.8
arahy.Tifrunner.gnm1.ann1.B59VJ6 Arachis hypogaea HOM05D004215 ORTHO05D005293 1.3e-25 121.3 135 49.6
BolC2t11573H Brassica oleracea HOM05D004215 ORTHO05D005293 2.1e-23 114.0 156 48.7
RcHm_v2.0_Chr6g0253871 Rosa chinensis HOM05D004215 ORTHO05D005293 6.1e-23 112.5 92 62.0
RcHm_v2.0_Chr2g0123901 Rosa chinensis HOM05D004215 ORTHO05D005293 1.3e-22 111.3 96 60.4
SMO201G0141 Selaginella moellendorffii HOM05D028400 ORTHO05D005293 3.3e-21 106.7 194 35.1
C02p55250 Brassica napus HOM05D004215 ORTHO05D005293 5.3e-19 99.4 193 38.9
BcaB07g30283 Brassica carinata HOM05D004215 ORTHO05D005293 3.4e-18 96.7 71 67.6
Actinidia24608 Actinidia chinensis HOM05D004215 ORTHO05D005293 1.3e-17 94.7 67 64.2
RcHm_v2.0_Chr6g0284911 Rosa chinensis HOM05D004215 ORTHO05D005293 2.7e-15 87.0 72 62.5
AagrBONN_evm.TU.Sc2ySwM_228.585 Anthoceros agrestis HOM05D004215 ORTHO05D018306 4.6e-15 86.3 311 24.1
BcaC03g17546 Brassica carinata HOM05D004215 ORTHO05D005293 4.6e-15 86.3 134 44.8
Pp3c20_8810 Physcomitrium patens HOM05D004215 ORTHO05D018306 4.8e-12 76.3 272 25.0
TPR.G10991 Trifolium pratense HOM05D004215 ORTHO05D005293 4.1e-11 73.2 60 63.3
C08p45130 Brassica napus HOM05D004215 ORTHO05D005293 3.6e-07 60.1 41 68.3
BolC8t52061H Brassica oleracea HOM05D004215 ORTHO05D005293 3.6e-07 60.1 41 68.3


User provided reference genes

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