Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold14G06919 Striga asiatica HOM05D003702 ORTHO05D004653 2.6e-233 811.6 389 100.0
SalBow8G2252 Salvia bowleyana HOM05D003702 ORTHO05D004653 2.6e-193 678.7 428 78.0
Migut.E00388 Erythranthe guttata HOM05D003702 ORTHO05D004653 3.2e-191 671.8 425 76.7
MSTRG.2203 Avicennia marina HOM05D003702 ORTHO05D004653 4.8e-187 657.9 428 75.2
MSTRG.7632 Avicennia marina HOM05D003702 ORTHO05D004653 1.3e-184 649.8 425 75.8
Oeu031392.1 Olea europaea HOM05D003702 ORTHO05D004653 1.7e-184 649.4 428 73.8
Lj6A750T93 Lonicera japonica HOM05D003702 ORTHO05D004653 8.5e-184 647.1 422 74.4
SalBow8G5575 Salvia bowleyana HOM05D003702 ORTHO05D004653 4.2e-183 644.8 429 73.7
Dinv04909 Davidia involucrata HOM05D003702 ORTHO05D004653 1.2e-182 643.3 428 73.1
CSS0038999 Camellia sinensis var. sinensis HOM05D003702 ORTHO05D004653 1.6e-182 642.9 428 72.7
Thecc.02G215000 Theobroma cacao HOM05D003702 ORTHO05D004653 6.1e-182 641.0 425 72.9
COL.COLO4_38548 Corchorus olitorius HOM05D003702 ORTHO05D004653 7.9e-182 640.6 425 72.9
Nn4g24020 Nelumbo nucifera HOM05D003702 ORTHO05D004653 1.0e-181 640.2 428 72.7
GSVIVG01011808001 Vitis vinifera HOM05D003702 ORTHO05D004653 1.0e-181 640.2 425 73.9
Nitab4.5_0000350g0060 Nicotiana tabacum HOM05D003702 ORTHO05D004653 1.8e-181 639.4 425 72.9
Prupe.1G319700 Prunus persica HOM05D003702 ORTHO05D004653 6.7e-181 637.5 425 71.8
FAN22G0804 Fragaria x ananassa HOM05D003702 ORTHO05D004653 1.1e-180 636.7 425 71.5
Cfa015818 Carpinus fangiana HOM05D003702 ORTHO05D004653 1.5e-180 636.3 425 72.0
FvH4_4g26430 Fragaria vesca HOM05D003702 ORTHO05D004653 1.5e-180 636.3 425 71.5
FAN07G0957 Fragaria x ananassa HOM05D003702 ORTHO05D004653 1.5e-180 636.3 425 71.5
FAN17G2320 Fragaria x ananassa HOM05D003702 ORTHO05D004653 1.5e-180 636.3 425 71.5
MD16G1035000 Malus domestica HOM05D003702 ORTHO05D004653 3.3e-180 635.2 428 71.7
RcHm_v2.0_Chr4g0434061 Rosa chinensis HOM05D003702 ORTHO05D004653 4.4e-180 634.8 425 71.5
Manes.14G109300 Manihot esculenta HOM05D003702 ORTHO05D004653 7.4e-180 634.0 428 72.9
Peaxi162Scf00897g00114 Petunia axillaris HOM05D003702 ORTHO05D004653 7.4e-180 634.0 428 71.7
Sc04g0005900 Simmondsia chinensis HOM05D003702 ORTHO05D004653 9.7e-180 633.6 425 71.1
TAR371G0966 Trochodendron aralioides HOM05D003702 ORTHO05D004653 9.7e-180 633.6 425 72.0
Duzib248G1136 Durio zibethinus HOM05D003702 ORTHO05D004653 1.7e-179 632.9 425 72.5
Cc11_g09310 Coffea canephora HOM05D003702 ORTHO05D004653 2.2e-179 632.5 428 71.3
MSTRG.874 Avicennia marina HOM05D003702 ORTHO05D004653 3.7e-179 631.7 428 72.9
Gohir.A09G005100 Gossypium hirsutum HOM05D003702 ORTHO05D004653 6.3e-179 630.9 425 71.3
QL01p003075 Quercus lobata HOM05D003702 ORTHO05D004653 1.4e-178 629.8 436 70.2
Gohir.D09G004400 Gossypium hirsutum HOM05D003702 ORTHO05D004653 1.8e-178 629.4 425 71.5
Glyma.10G268300 Glycine max HOM05D003702 ORTHO05D004653 2.4e-178 629.0 425 72.2
MD13G1033100 Malus domestica HOM05D003702 ORTHO05D004653 4.1e-178 628.2 428 70.3
Glyma.20G122800 Glycine max HOM05D003702 ORTHO05D004653 5.3e-178 627.9 425 72.0
PGR102G2387 Punica granatum HOM05D003702 ORTHO05D004653 5.3e-178 627.9 425 71.8
Gorai.006G006000 Gossypium raimondii HOM05D003702 ORTHO05D004653 1.2e-177 626.7 425 71.3
CAN.G139.1 Capsicum annuum HOM05D003702 ORTHO05D004653 1.5e-177 626.3 428 70.6
CiPaw.06G015200 Carya illinoinensis HOM05D003702 ORTHO05D004653 2.6e-177 625.5 426 71.4
Phvul.007G034000 Phaseolus vulgaris HOM05D003702 ORTHO05D004653 2.6e-177 625.5 425 71.5
Aqoxy5G03879 Aquilegia oxysepala HOM05D003702 ORTHO05D004653 3.5e-177 625.2 425 70.8
Sopen05g004420 Solanum pennellii HOM05D003702 ORTHO05D004653 3.5e-177 625.2 425 70.8
VMungo0720G1815 Vigna mungo HOM05D003702 ORTHO05D004653 3.5e-177 625.2 425 72.2
ECA233G3005 Erigeron canadensis HOM05D003702 ORTHO05D004653 4.5e-177 624.8 423 70.7
Gohir.A12G141400 Gossypium hirsutum HOM05D003702 ORTHO05D004653 4.5e-177 624.8 425 71.1
CAN.G1489.18 Capsicum annuum HOM05D003702 ORTHO05D004653 5.9e-177 624.4 425 70.6
Gohir.D12G146300 Gossypium hirsutum HOM05D003702 ORTHO05D004653 7.7e-177 624.0 425 71.1
Gorai.008G157600 Gossypium raimondii HOM05D003702 ORTHO05D004653 7.7e-177 624.0 425 71.1
Haze_00678 Corylus avellana HOM05D003702 ORTHO05D004653 1.0e-176 623.6 449 68.2
DCAR_030184 Daucus carota HOM05D003702 ORTHO05D004653 1.0e-176 623.6 421 72.0
Solyc05g008580.3 Solanum lycopersicum HOM05D003702 ORTHO05D004653 1.3e-176 623.2 425 70.8
Duzib268G1865 Durio zibethinus HOM05D003702 ORTHO05D004653 1.7e-176 622.9 425 71.8
Ca_30213_v3 Cicer arietinum L. HOM05D003702 ORTHO05D004653 2.9e-176 622.1 425 71.1
Ciclev10015341m.g Citrus clementina HOM05D003702 ORTHO05D004653 2.9e-176 622.1 419 72.3
HanXRQChr14g0459241 Helianthus annuus HOM05D003702 ORTHO05D004653 2.9e-176 622.1 428 69.9
Solyc04g007520.3 Solanum lycopersicum HOM05D003702 ORTHO05D004653 2.9e-176 622.1 428 69.9
Atru.chr11.329 Acer truncatum HOM05D003702 ORTHO05D004653 6.5e-176 620.9 419 72.3
Eucgr.B02865 Eucalyptus grandis HOM05D003702 ORTHO05D004653 6.5e-176 620.9 428 71.7
Potri.010G117500 Populus trichocarpa HOM05D003702 ORTHO05D004653 1.9e-175 619.4 420 71.7
Lalb_Chr21g0308661 Lupinus albus HOM05D003702 ORTHO05D004653 2.5e-175 619.0 428 70.8
Sopen04g002600 Solanum pennellii HOM05D003702 ORTHO05D004653 2.5e-175 619.0 428 69.6
SGA_v2.0_scaffold170G38819 Striga asiatica HOM05D003702 ORTHO05D004653 4.2e-175 618.2 402 77.6
PGSC0003DMG400030564 Solanum tuberosum HOM05D003702 ORTHO05D004653 9.4e-175 617.1 425 70.1
CiPaw.05G244900 Carya illinoinensis HOM05D003702 ORTHO05D004653 1.2e-174 616.7 422 70.6
PSO478G4444 Papaver somniferum HOM05D003702 ORTHO05D004653 1.2e-174 616.7 429 70.2
arahy.Tifrunner.gnm1.ann1.A779NY Arachis hypogaea HOM05D003702 ORTHO05D004653 1.6e-174 616.3 415 70.6
TWI75G1265 Tripterygium wilfordii HOM05D003702 ORTHO05D004653 1.6e-174 616.3 425 70.1
Lj5g0010985 Lotus japonicus HOM05D003702 ORTHO05D004653 6.1e-174 614.4 425 69.6
Lalb_Chr02g0145651 Lupinus albus HOM05D003702 ORTHO05D004653 6.1e-174 614.4 428 70.1
MELO3C005332.2 Cucumis melo HOM05D003702 ORTHO05D004653 1.0e-173 613.6 425 68.7
HanXRQChr17g0553131 Helianthus annuus HOM05D003702 ORTHO05D004653 1.0e-173 613.6 416 70.4
Sabra10G0088500 Salix brachista HOM05D003702 ORTHO05D004653 2.3e-173 612.5 464 65.1
Medtr1g109120 Medicago truncatula HOM05D003702 ORTHO05D004653 5.2e-173 611.3 432 69.7
Sabra10G0086900 Salix brachista HOM05D003702 ORTHO05D004653 5.2e-173 611.3 464 65.1
PSO017G5274 Papaver somniferum HOM05D003702 ORTHO05D004653 6.7e-173 610.9 430 69.1
CsaV3_5G028680 Cucumis sativus L. HOM05D003702 ORTHO05D004653 1.1e-172 610.1 428 68.7
THA.LOC104805051 Tarenaya hassleriana HOM05D003702 ORTHO05D004653 3.3e-172 608.6 426 70.4
Potri.008G126100 Populus trichocarpa HOM05D003702 ORTHO05D004653 4.4e-172 608.2 420 70.0
EL10Ac1g01504 Beta vulgaris HOM05D003702 ORTHO05D004653 9.7e-172 607.1 407 71.5
Migut.L01016 Erythranthe guttata HOM05D003702 ORTHO05D004653 1.7e-171 606.3 405 73.6
Peaxi162Scf00205g01127 Petunia axillaris HOM05D003702 ORTHO05D004653 1.7e-171 606.3 465 65.2
Sabra08G0095000 Salix brachista HOM05D003702 ORTHO05D004653 2.2e-171 605.9 420 69.5
Lsat_1_v5_gn_8_41841 Lactuca sativa HOM05D003702 ORTHO05D004653 4.8e-171 604.7 429 69.0
GSVIVG01008367001 Vitis vinifera HOM05D003702 ORTHO05D004653 1.8e-170 602.8 425 68.0
Oeu036128.1 Olea europaea HOM05D003702 ORTHO05D004653 3.1e-170 602.1 510 61.4
Sed0016261 Sechium edule HOM05D003702 ORTHO05D004653 3.1e-170 602.1 428 67.1
ECA246G4421 Erigeron canadensis HOM05D003702 ORTHO05D004653 4.1e-170 601.7 425 68.5
Ah.05g167700 Amaranthus hybridus HOM05D003702 ORTHO05D004653 2.6e-169 599.0 428 68.0
Thhalv10007726m.g Eutrema salsugineum HOM05D003702 ORTHO05D004653 2.6e-169 599.0 425 68.5
ATR0691G123 Amborella trichopoda HOM05D003702 ORTHO05D004653 3.5e-169 598.6 425 68.7
Sp1g13450 Schrenkiella parvula HOM05D003702 ORTHO05D004653 3.8e-168 595.1 425 67.5
BcaB02g06576 Brassica carinata HOM05D003702 ORTHO05D004653 5.0e-168 594.7 420 68.6
Lalb_Chr06g0165751 Lupinus albus HOM05D003702 ORTHO05D004653 1.5e-167 593.2 435 66.9
MELO3C012286.2 Cucumis melo HOM05D003702 ORTHO05D004653 9.4e-167 590.5 458 63.8
CsaV3_5G034740 Cucumis sativus L. HOM05D003702 ORTHO05D004653 3.6e-166 588.6 458 63.8
AT1G15110 Arabidopsis thaliana HOM05D003702 ORTHO05D004653 1.4e-165 586.6 417 69.1
AL1G27170 Arabidopsis lyrata HOM05D003702 ORTHO05D004653 4.0e-165 585.1 417 68.8
Carub.0001s1487 Capsella rubella HOM05D003702 ORTHO05D004653 4.0e-165 585.1 417 68.6
CARHR015630 Cardamine hirsuta HOM05D003702 ORTHO05D004653 6.8e-165 584.3 416 68.3
Sc14g0007250 Simmondsia chinensis HOM05D003702 ORTHO05D004653 8.8e-165 583.9 386 73.6
FAN12G3413 Fragaria x ananassa HOM05D003702 ORTHO05D004653 1.2e-164 583.6 385 72.5
BcaC05g25442 Brassica carinata HOM05D003702 ORTHO05D004653 4.4e-164 581.6 427 66.7
Lsat_1_v5_gn_3_56601 Lactuca sativa HOM05D003702 ORTHO05D004653 1.7e-163 579.7 434 65.7
Sed0021449 Sechium edule HOM05D003702 ORTHO05D004653 4.8e-163 578.2 458 62.9
A09p61570 Brassica napus HOM05D003702 ORTHO05D004653 8.3e-163 577.4 425 66.6
vmacro12220 Vaccinium macrocarpon HOM05D003702 ORTHO05D004653 1.1e-162 577.0 546 55.9
Manes.06G063400 Manihot esculenta HOM05D003702 ORTHO05D004653 3.1e-162 575.5 384 72.9
Nitab4.5_0004597g0050 Nicotiana tabacum HOM05D003702 ORTHO05D004653 1.2e-161 573.5 387 71.6
FAN12G0213 Fragaria x ananassa HOM05D003702 ORTHO05D004653 1.6e-161 573.2 381 72.2
Nitab4.5_0003886g0040 Nicotiana tabacum HOM05D003702 ORTHO05D004653 1.6e-161 573.2 380 73.7
BcaNung05515 Brassica carinata HOM05D003702 ORTHO05D004653 7.7e-161 570.9 425 65.9
C08p45160 Brassica napus HOM05D003702 ORTHO05D004653 7.7e-161 570.9 425 65.9
MBI10_g06746_MAGBIO Magnolia biondii HOM05D003702 ORTHO05D004653 2.9e-160 568.9 381 73.5
TPR.G4874 Trifolium pratense HOM05D003702 ORTHO05D004653 2.9e-160 568.9 385 71.9
Nitab4.5_0000881g0100 Nicotiana tabacum HOM05D003702 ORTHO05D004653 6.5e-160 567.8 408 68.6
Zm00001eb334750 Zea mays HOM05D003702 ORTHO05D004653 2.5e-159 565.8 425 65.2
Rhsim09G0102000 Rhododendron simsii HOM05D003702 ORTHO05D004653 1.2e-158 563.5 414 67.9
Zm00001eb343120 Zea mays HOM05D003702 ORTHO05D004653 4.7e-158 561.6 397 65.2
Zm00001eb295120 Zea mays HOM05D003702 ORTHO05D004653 1.8e-157 559.7 429 62.2
arahy.Tifrunner.gnm1.ann1.8F881C Arachis hypogaea HOM05D003702 ORTHO05D004653 1.5e-156 556.6 376 71.0
Os05g0554400 Oryza sativa ssp. japonica HOM05D003702 ORTHO05D004653 4.4e-156 555.1 420 63.3
C05p13230 Brassica napus HOM05D003702 ORTHO05D004653 1.1e-154 550.4 391 69.8
BolC5t30060H Brassica oleracea HOM05D003702 ORTHO05D004653 1.1e-154 550.4 391 69.8
BraA06t24290Z Brassica rapa HOM05D003702 ORTHO05D004653 5.4e-154 548.1 386 69.9
A06p11110 Brassica napus HOM05D003702 ORTHO05D004653 7.0e-154 547.7 386 69.9
BraA09t41530Z Brassica rapa HOM05D003702 ORTHO05D004653 8.6e-152 540.8 390 69.0
Dinv16161 Davidia involucrata HOM05D003702 ORTHO05D004653 2.1e-150 536.2 355 73.5
BolC8t52064H Brassica oleracea HOM05D003702 ORTHO05D004653 8.0e-150 534.3 390 68.2
HPP92_026069 Vanilla planifolia HOM05D003702 ORTHO05D004653 1.8e-149 533.1 410 61.7
BcaB03g14561 Brassica carinata HOM05D003702 ORTHO05D004653 2.0e-145 519.6 370 68.1
Psat6g222840 Pisum sativum HOM05D003702 ORTHO05D004653 1.9e-143 513.1 355 70.7
ClCG01G006000 Citrullus lanatus HOM05D003702 ORTHO05D004653 3.6e-142 508.8 355 68.7
AUR62037259 Chenopodium quinoa HOM05D003702 ORTHO05D004653 5.8e-140 501.5 355 68.7
Sed0022429 Sechium edule HOM05D003702 ORTHO05D004653 1.3e-139 500.4 347 69.7
vmacro10616 Vaccinium macrocarpon HOM05D003702 ORTHO05D004653 1.3e-139 500.4 463 56.8
CDE07G1100 Ceratophyllum demersum HOM05D003702 ORTHO05D004653 4.9e-139 498.4 355 69.0
unitig_746.g26864 Utricularia gibba HOM05D003702 ORTHO05D004653 2.3e-136 489.6 408 63.0
Aa31LG1G40 Aethionema arabicum HOM05D003702 ORTHO05D004653 1.5e-135 486.9 398 63.1
CDE06G0787 Ceratophyllum demersum HOM05D003702 ORTHO05D004653 7.3e-135 484.6 417 60.0
Zm00001eb125990 Zea mays HOM05D003702 ORTHO05D004653 5.2e-133 478.4 345 68.4
Mapoly0057s0110 Marchantia polymorpha HOM05D003702 ORTHO05D004653 9.8e-132 474.2 385 59.2
Pp3c4_15740 Physcomitrium patens HOM05D003702 ORTHO05D004653 1.7e-131 473.4 375 60.5
ClCG05G022350 Citrullus lanatus HOM05D003702 ORTHO05D004653 8.6e-128 461.1 395 60.8
HPP92_008281 Vanilla planifolia HOM05D003702 ORTHO05D004653 3.4e-124 449.1 328 64.0
Pp3c26_4170 Physcomitrium patens HOM05D003702 ORTHO05D004653 7.6e-124 448.0 396 54.8
AagrBONN_evm.TU.Sc2ySwM_117.3898 Anthoceros agrestis HOM05D003702 ORTHO05D004653 1.9e-119 433.3 340 61.5
Hund20721 Selenicereus undatus HOM05D003702 ORTHO05D004653 5.6e-119 431.8 287 73.5
HPP92_021847 Vanilla planifolia HOM05D003702 ORTHO05D004653 1.7e-115 420.2 327 62.1
Actinidia16697 Actinidia chinensis HOM05D003702 ORTHO05D004653 6.9e-109 398.3 441 49.4
Oeu048389.1 Olea europaea HOM05D003702 ORTHO05D004653 3.5e-105 386.0 212 84.0
TAR629G3334 Trochodendron aralioides HOM05D003702 ORTHO05D004653 9.3e-98 361.3 212 78.8
Duzib251G0696 Durio zibethinus HOM05D003702 ORTHO05D004653 5.3e-93 345.5 343 54.8
Sed0018132 Sechium edule HOM05D003702 ORTHO05D004653 1.6e-89 334.0 245 66.9
Aqoxy6G00508 Aquilegia oxysepala HOM05D003702 ORTHO05D004653 8.7e-80 301.6 233 64.8
Cpa.g.sc65.87 Carica papaya HOM05D003702 ORTHO05D004653 3.1e-77 293.1 179 76.5
CSS0044058 Camellia sinensis var. sinensis HOM05D003702 ORTHO05D004653 1.2e-76 291.2 160 83.1
AUR62002771 Chenopodium quinoa HOM05D003702 ORTHO05D004653 2.2e-70 270.4 204 66.2
Os01g0118300 Oryza sativa ssp. japonica HOM05D003702 ORTHO05D004653 1.6e-65 254.2 168 71.4
MCO02G069 Micromonas commoda HOM05D003702 ORTHO05D004653 7.9e-65 251.9 323 41.2
Zm00001eb335270 Zea mays HOM05D003702 ORTHO05D004653 5.3e-61 239.2 135 79.3
SMO116G0260 Selaginella moellendorffii HOM05D003702 ORTHO05D004653 5.9e-60 235.7 192 58.9
Os01g0683550 Oryza sativa ssp. japonica HOM05D003702 ORTHO05D004653 1.6e-57 227.6 209 54.1
Aqoxy6G00509 Aquilegia oxysepala HOM05D003702 ORTHO05D004653 1.3e-54 218.0 119 85.7
Zm00001eb103650 Zea mays HOM05D003702 ORTHO05D004653 2.8e-54 216.9 126 78.6
CSS0043066 Camellia sinensis var. sinensis HOM05D003702 ORTHO05D004653 4.5e-52 209.5 127 75.6
SEGI_02132 Sequoiadendron giganteum HOM05D003702 ORTHO05D004653 1.6e-41 174.5 127 64.6
Zm00001eb294100 Zea mays HOM05D003702 ORTHO05D004653 1.6e-41 174.5 118 69.5
Zm00001eb371470 Zea mays HOM05D003702 ORTHO05D004653 7.5e-39 165.6 89 78.7
Aqoxy7G02147 Aquilegia oxysepala HOM05D003702 ORTHO05D004653 1.3e-38 164.9 85 85.9
CSS0004358 Camellia sinensis var. sinensis HOM05D003702 ORTHO05D004653 1.7e-38 164.5 84 90.5
Zm00001eb367010 Zea mays HOM05D003702 ORTHO05D004653 2.1e-33 147.5 90 73.3
Lsat_1_v5_gn_0_25341 Lactuca sativa HOM05D006132 ORTHO05D007305 8.0e-33 145.6 98 68.4
C05p31130 Brassica napus HOM05D003702 ORTHO05D014526 4.0e-24 116.7 131 49.6
C07p19070 Brassica napus HOM05D003702 ORTHO05D014526 4.0e-24 116.7 131 48.1
C08p39290 Brassica napus HOM05D003702 ORTHO05D014526 2.0e-23 114.4 111 55.0
BolC7t42416H Brassica oleracea HOM05D003702 ORTHO05D014526 5.8e-23 112.8 100 55.0
BcaC07g40935 Brassica carinata HOM05D003702 ORTHO05D014526 1.3e-22 111.7 92 60.9
BolC4t27595H Brassica oleracea HOM05D003702 ORTHO05D014526 1.7e-22 111.3 80 66.2
BolC5t33656H Brassica oleracea HOM05D003702 ORTHO05D014526 1.7e-22 111.3 100 54.0
BcaC01g03963 Brassica carinata HOM05D003702 ORTHO05D014526 2.9e-22 110.5 80 65.0
SHI16230 Sapria himalayana HOM05D000105 ORTHO05D000023 5.4e-21 106.3 118 48.3
BolC3t21317H Brassica oleracea HOM05D003702 ORTHO05D014526 1.6e-20 104.8 80 63.8
C03p53560 Brassica napus HOM05D003547 ORTHO05D042659 4.0e-08 63.5 81 46.9
BolC3t17616H Brassica oleracea HOM05D003547 ORTHO05D042659 4.0e-08 63.5 81 46.9
PRCOL_00004560 Prasinoderma coloniale HOM05D003702 ORTHO05D004653 8.9e-08 62.4 182 28.0


User provided reference genes

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