Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold14G06802 Striga asiatica HOM05D004290 ORTHO05D005025 2.7e-79 298.5 144 100.0
SGA_v2.0_scaffold14G06801 Striga asiatica HOM05D004290 ORTHO05D005025 5.0e-73 277.7 144 92.4
SalBow8G2020 Salvia bowleyana HOM05D004290 ORTHO05D005025 3.6e-55 218.4 136 73.5
unitig_744.g24286 Utricularia gibba HOM05D004290 ORTHO05D005025 6.4e-52 207.6 139 66.9
Lj3A1022T62 Lonicera japonica HOM05D004290 ORTHO05D005025 1.4e-51 206.5 141 68.1
SalBow8G3034 Salvia bowleyana HOM05D004290 ORTHO05D005025 2.0e-50 202.6 134 67.2
HanXRQChr08g0214461 Helianthus annuus HOM05D004290 ORTHO05D005025 7.8e-50 200.7 134 70.1
CiPaw.05G172700 Carya illinoinensis HOM05D004290 ORTHO05D005025 1.3e-49 199.9 138 68.1
Migut.L01112 Erythranthe guttata HOM05D004290 ORTHO05D005025 6.6e-49 197.6 136 67.6
CiPaw.05G172800 Carya illinoinensis HOM05D004290 ORTHO05D005025 8.6e-49 197.2 138 67.4
Cc11_g10800 Coffea canephora HOM05D004290 ORTHO05D005025 1.1e-48 196.8 137 67.2
Dinv05808 Davidia involucrata HOM05D000436 ORTHO05D005025 1.1e-48 196.8 124 75.0
Nitab4.5_0001178g0080 Nicotiana tabacum HOM05D004290 ORTHO05D005025 1.1e-48 196.8 137 67.2
Nitab4.5_0013408g0010 Nicotiana tabacum HOM05D004290 ORTHO05D005025 1.1e-48 196.8 137 67.2
CANSAT64G1327 Cannabis sativa HOM05D004290 ORTHO05D005025 1.9e-48 196.1 133 68.4
Cc11_g10790 Coffea canephora HOM05D004290 ORTHO05D005025 1.9e-48 196.1 141 65.2
MSTRG.7697 Avicennia marina HOM05D004290 ORTHO05D005025 2.5e-48 195.7 135 68.1
QL03p037189 Quercus lobata HOM05D004290 ORTHO05D005025 2.5e-48 195.7 134 66.4
MELO3C012202.2 Cucumis melo HOM05D004290 ORTHO05D005025 7.3e-48 194.1 139 59.0
Solyc05g010015.1 Solanum lycopersicum HOM05D004290 ORTHO05D005025 7.3e-48 194.1 137 66.4
Nn4g23673 Nelumbo nucifera HOM05D004290 ORTHO05D005025 9.5e-48 193.7 139 64.7
SalBow8G1203 Salvia bowleyana HOM05D004290 ORTHO05D005025 9.5e-48 193.7 141 63.8
SalBow8G5193 Salvia bowleyana HOM05D004290 ORTHO05D005025 9.5e-48 193.7 141 63.8
Sopen05g005830 Solanum pennellii HOM05D004290 ORTHO05D005025 9.5e-48 193.7 137 67.2
Dinv16527 Davidia involucrata HOM05D004290 ORTHO05D005025 1.2e-47 193.4 124 74.2
Thecc.02G363400 Theobroma cacao HOM05D004290 ORTHO05D005025 1.2e-47 193.4 141 62.4
Duzib251G0274 Durio zibethinus HOM05D004290 ORTHO05D005025 3.6e-47 191.8 141 63.1
Potri.008G114300 Populus trichocarpa HOM05D004290 ORTHO05D005025 3.6e-47 191.8 140 63.6
RcHm_v2.0_Chr4g0436191 Rosa chinensis HOM05D004290 ORTHO05D005025 3.6e-47 191.8 139 63.3
Aqoxy3G03864 Aquilegia oxysepala HOM05D004290 ORTHO05D005025 4.7e-47 191.4 134 65.7
EL10Ac6g14527 Beta vulgaris HOM05D004290 ORTHO05D005025 4.7e-47 191.4 134 66.4
Ciclev10033020m.g Citrus clementina HOM05D004290 ORTHO05D005025 4.7e-47 191.4 139 64.0
DCAR_026707 Daucus carota HOM05D004290 ORTHO05D005025 4.7e-47 191.4 140 65.0
FAN12G2228 Fragaria x ananassa HOM05D004290 ORTHO05D005025 6.2e-47 191.0 141 61.0
Aa31sc79G10 Aethionema arabicum HOM05D004290 ORTHO05D005025 8.0e-47 190.7 141 63.1
COL.COLO4_07852 Corchorus olitorius HOM05D004290 ORTHO05D005025 8.0e-47 190.7 131 67.9
Sp5g23870 Schrenkiella parvula HOM05D004290 ORTHO05D005025 1.1e-46 190.3 141 60.3
FvH4_4g28340 Fragaria vesca HOM05D004290 ORTHO05D005025 1.8e-46 189.5 141 60.3
FAN22G0640 Fragaria x ananassa HOM05D004290 ORTHO05D005025 1.8e-46 189.5 141 60.3
Manes.06G074500 Manihot esculenta HOM05D004290 ORTHO05D005025 2.3e-46 189.1 136 65.4
Sc04g0006830 Simmondsia chinensis HOM05D004290 ORTHO05D005025 2.3e-46 189.1 139 61.2
PGR102G2310 Punica granatum HOM05D004290 ORTHO05D005025 3.1e-46 188.7 140 67.9
Hund05546 Selenicereus undatus HOM05D004290 ORTHO05D005025 3.1e-46 188.7 135 65.2
Ah.02g127350 Amaranthus hybridus HOM05D004290 ORTHO05D005025 4.0e-46 188.3 132 66.7
CsaV3_5G033840 Cucumis sativus L. HOM05D004290 ORTHO05D005025 4.0e-46 188.3 136 58.8
Sabra08G0086600 Salix brachista HOM05D004290 ORTHO05D005025 4.0e-46 188.3 140 62.1
ClCG00G001430 Citrullus lanatus HOM05D004290 ORTHO05D005025 5.2e-46 188.0 139 58.3
ClCG05G023160 Citrullus lanatus HOM05D004290 ORTHO05D005025 5.2e-46 188.0 139 58.3
FAN17G1675 Fragaria x ananassa HOM05D004290 ORTHO05D005025 1.5e-45 186.4 141 59.6
GSVIVG01011978001 Vitis vinifera HOM05D004290 ORTHO05D005025 2.6e-45 185.7 144 63.2
HanXRQChr16g0528791 Helianthus annuus HOM05D004290 ORTHO05D005025 4.4e-45 184.9 139 61.9
PSO478G2631 Papaver somniferum HOM05D004290 ORTHO05D005025 5.8e-45 184.5 138 63.0
Haze_11793 Corylus avellana HOM05D004290 ORTHO05D005025 7.5e-45 184.1 150 58.7
TWI31G0716 Tripterygium wilfordii HOM05D004290 ORTHO05D005025 7.5e-45 184.1 142 62.7
DCAR_023699 Daucus carota HOM05D004290 ORTHO05D005025 9.8e-45 183.7 141 58.2
Oeu044394.1 Olea europaea HOM05D004290 ORTHO05D005025 1.3e-44 183.3 129 69.8
QL03p036461 Quercus lobata HOM05D004290 ORTHO05D005025 1.3e-44 183.3 141 61.0
ECA234G2024 Erigeron canadensis HOM05D004290 ORTHO05D005025 1.7e-44 183.0 136 61.0
Eucgr.B03066 Eucalyptus grandis HOM05D004290 ORTHO05D005025 1.7e-44 183.0 142 63.4
Gohir.A13G071200 Gossypium hirsutum HOM05D004290 ORTHO05D005025 1.7e-44 183.0 141 61.0
Potri.008G114400 Populus trichocarpa HOM05D004290 ORTHO05D005025 1.7e-44 183.0 138 63.8
Prupe.1G303000 Prunus persica HOM05D004290 ORTHO05D005025 1.7e-44 183.0 140 61.4
MSTRG.13496 Avicennia marina HOM05D004290 ORTHO05D005025 2.2e-44 182.6 137 62.8
A02p15320 Brassica napus HOM05D004290 ORTHO05D005025 2.2e-44 182.6 136 61.8
AT1G68760 Arabidopsis thaliana HOM05D004290 ORTHO05D005025 2.9e-44 182.2 141 58.2
BcaB05g24409 Brassica carinata HOM05D004290 ORTHO05D005025 2.9e-44 182.2 134 61.2
Cfa008781 Carpinus fangiana HOM05D004290 ORTHO05D005025 2.9e-44 182.2 146 60.3
BraA02t06593Z Brassica rapa HOM05D004290 ORTHO05D005025 3.7e-44 181.8 135 62.2
AL2G27690 Arabidopsis lyrata HOM05D004290 ORTHO05D005025 4.9e-44 181.4 141 58.2
C02p25170 Brassica napus HOM05D004290 ORTHO05D005025 4.9e-44 181.4 135 62.2
DCAR_017507 Daucus carota HOM05D004290 ORTHO05D005025 4.9e-44 181.4 140 59.3
DCAR_026708 Daucus carota HOM05D004290 ORTHO05D005025 4.9e-44 181.4 140 59.3
Gohir.D13G069200 Gossypium hirsutum HOM05D004290 ORTHO05D005025 6.4e-44 181.0 141 59.6
Gorai.013G079300 Gossypium raimondii HOM05D004290 ORTHO05D005025 6.4e-44 181.0 141 59.6
arahy.Tifrunner.gnm1.ann1.IBNT6Z Arachis hypogaea HOM05D004290 ORTHO05D005025 8.3e-44 180.6 142 60.6
arahy.Tifrunner.gnm1.ann1.U655LF Arachis hypogaea HOM05D004290 ORTHO05D005025 8.3e-44 180.6 142 60.6
CARHR061580 Cardamine hirsuta HOM05D004290 ORTHO05D005025 8.3e-44 180.6 141 57.4
Ca_19617_v3 Cicer arietinum L. HOM05D004290 ORTHO05D005025 8.3e-44 180.6 145 60.7
Ca_30768_v3 Cicer arietinum L. HOM05D004290 ORTHO05D005025 8.3e-44 180.6 145 60.7
MELO3C005349.2 Cucumis melo HOM05D004290 ORTHO05D005025 1.1e-43 180.3 139 61.9
Thhalv10019297m.g Eutrema salsugineum HOM05D004290 ORTHO05D005025 1.1e-43 180.3 143 59.4
MD13G1048900 Malus domestica HOM05D004290 ORTHO05D005025 1.1e-43 180.3 141 61.0
MD13G1049100 Malus domestica HOM05D004290 ORTHO05D005025 1.1e-43 180.3 141 61.7
Sed0009817 Sechium edule HOM05D004290 ORTHO05D005025 1.1e-43 180.3 134 59.0
Prupe.1G302800 Prunus persica HOM05D004290 ORTHO05D005025 1.4e-43 179.9 137 64.2
RcHm_v2.0_Chr6g0244161 Rosa chinensis HOM05D004290 ORTHO05D005025 1.4e-43 179.9 135 63.7
CsaV3_5G028890 Cucumis sativus L. HOM05D004290 ORTHO05D005025 1.9e-43 179.5 139 61.2
RcHm_v2.0_Chr2g0142071 Rosa chinensis HOM05D004290 ORTHO05D005025 1.9e-43 179.5 133 63.2
RcHm_v2.0_Chr2g0142081 Rosa chinensis HOM05D004290 ORTHO05D005025 1.9e-43 179.5 133 63.2
RcHm_v2.0_Chr2g0142111 Rosa chinensis HOM05D004290 ORTHO05D005025 1.9e-43 179.5 133 63.2
THA.LOC104821971 Tarenaya hassleriana HOM05D004290 ORTHO05D005025 1.9e-43 179.5 136 60.3
ECA233G1907 Erigeron canadensis HOM05D004290 ORTHO05D005025 2.4e-43 179.1 136 63.2
FvH4_6g24180 Fragaria vesca HOM05D004290 ORTHO05D005025 2.4e-43 179.1 134 62.7
FAN14G4265 Fragaria x ananassa HOM05D004290 ORTHO05D005025 2.4e-43 179.1 134 62.7
Lj2g0025619 Lotus japonicus HOM05D004290 ORTHO05D005025 2.4e-43 179.1 140 63.6
Sed0004732 Sechium edule HOM05D004290 ORTHO05D005025 3.2e-43 178.7 137 63.5
C04p37630 Brassica napus HOM05D004290 ORTHO05D005025 4.1e-43 178.3 135 61.5
BolC2t08596H Brassica oleracea HOM05D004290 ORTHO05D005025 4.1e-43 178.3 135 61.5
RcHm_v2.0_Chr4g0436181 Rosa chinensis HOM05D004290 ORTHO05D005025 4.1e-43 178.3 134 63.4
Aqoxy3G03865 Aquilegia oxysepala HOM05D004290 ORTHO05D005025 5.4e-43 177.9 140 58.6
ClCG05G023170 Citrullus lanatus HOM05D004290 ORTHO05D005025 5.4e-43 177.9 134 56.7
Lsat_1_v5_gn_8_37520 Lactuca sativa HOM05D004290 ORTHO05D005025 5.4e-43 177.9 129 65.1
FAN09G0247 Fragaria x ananassa HOM05D004290 ORTHO05D005025 7.0e-43 177.6 134 62.7
Lalb_Chr04g0255051 Lupinus albus HOM05D004290 ORTHO05D005025 1.2e-42 176.8 142 61.3
RcHm_v2.0_Chr2g0142121 Rosa chinensis HOM05D004290 ORTHO05D005025 1.2e-42 176.8 133 61.7
HanXRQChr16g0528801 Helianthus annuus HOM05D004290 ORTHO05D005025 2.1e-42 176.0 137 59.1
ATR1147G043 Amborella trichopoda HOM05D004290 ORTHO05D005025 2.7e-42 175.6 141 57.4
FvH4_4g28310 Fragaria vesca HOM05D004290 ORTHO05D005025 3.5e-42 175.3 132 60.6
FAN12G0523 Fragaria x ananassa HOM05D004290 ORTHO05D005025 3.5e-42 175.3 132 60.6
FAN12G2396 Fragaria x ananassa HOM05D004290 ORTHO05D005025 3.5e-42 175.3 134 61.9
Glyma.01G090900 Glycine max HOM05D004290 ORTHO05D005025 3.5e-42 175.3 139 62.6
HPP92_021836 Vanilla planifolia HOM05D004290 ORTHO05D005025 6.0e-42 174.5 136 58.1
FvH4_4g28300 Fragaria vesca HOM05D004290 ORTHO05D005025 7.8e-42 174.1 134 61.9
AUR62007751 Chenopodium quinoa HOM05D004290 ORTHO05D005025 1.3e-41 173.3 135 61.5
CDE10G0275 Ceratophyllum demersum HOM05D004290 ORTHO05D005025 2.3e-41 172.6 138 60.1
FAN09G2488 Fragaria x ananassa HOM05D004290 ORTHO05D005025 2.3e-41 172.6 135 62.2
Phvul.003G024900 Phaseolus vulgaris HOM05D004290 ORTHO05D005025 2.3e-41 172.6 132 62.9
Carub.0002s1532 Capsella rubella HOM05D004290 ORTHO05D005025 3.0e-41 172.2 141 56.0
MD16G1050200 Malus domestica HOM05D004290 ORTHO05D005025 3.0e-41 172.2 134 62.7
Psat2g074600 Pisum sativum HOM05D004290 ORTHO05D005025 3.9e-41 171.8 141 58.2
Lsat_1_v5_gn_4_17281 Lactuca sativa HOM05D004290 ORTHO05D005025 5.0e-41 171.4 136 58.1
Medtr5g062660 Medicago truncatula HOM05D004290 ORTHO05D005025 5.0e-41 171.4 145 59.3
MBI10_g35795_MAGBIO Magnolia biondii HOM05D004290 ORTHO05D005025 1.1e-40 170.2 128 60.9
Peaxi162Scf00118g01310 Petunia axillaris HOM05D004290 ORTHO05D005025 1.5e-40 169.9 134 56.7
AUR62002942 Chenopodium quinoa HOM05D004290 ORTHO05D005025 2.5e-40 169.1 135 60.7
FAN07G1902 Fragaria x ananassa HOM05D004290 ORTHO05D005025 2.5e-40 169.1 134 59.7
ClCG01G005800 Citrullus lanatus HOM05D004290 ORTHO05D005025 1.2e-39 166.8 177 49.2
MD16G1050100 Malus domestica HOM05D004290 ORTHO05D005025 1.2e-39 166.8 135 59.3
TPR.G33571 Trifolium pratense HOM05D004290 ORTHO05D005025 1.2e-39 166.8 148 58.8
PGSC0003DMG400030259 Solanum tuberosum HOM05D004290 ORTHO05D005025 2.1e-39 166.0 136 55.1
Solyc03g043860.2 Solanum lycopersicum HOM05D004290 ORTHO05D005025 2.8e-39 165.6 136 55.1
BcaC03g14984 Brassica carinata HOM05D004290 ORTHO05D005025 3.6e-39 165.2 134 58.2
CSS0026618 Camellia sinensis var. sinensis HOM05D004290 ORTHO05D005025 1.8e-38 162.9 144 54.9
Prupe.1G302900 Prunus persica HOM05D004290 ORTHO05D005025 3.1e-38 162.2 137 59.1
Pp3c20_17780 Physcomitrium patens HOM05D004290 ORTHO05D005025 5.2e-38 161.4 132 54.5
Prupe.1G303100 Prunus persica HOM05D004290 ORTHO05D005025 1.2e-37 160.2 137 56.9
RcHm_v2.0_Chr4g0436151 Rosa chinensis HOM05D004290 ORTHO05D005025 7.5e-37 157.5 142 55.6
Peaxi162Scf00367g00519 Petunia axillaris HOM05D004290 ORTHO05D005025 1.7e-36 156.4 137 56.9
Prupe.1G300800 Prunus persica HOM05D004290 ORTHO05D005025 3.7e-36 155.2 135 56.3
Mapoly0059s0094 Marchantia polymorpha HOM05D004290 ORTHO05D005025 1.1e-35 153.7 141 50.4
Actinidia14836 Actinidia chinensis HOM05D000436 ORTHO05D000678 3.2e-35 152.1 112 67.9
CAN.G184.70 Capsicum annuum HOM05D004290 ORTHO05D005025 2.7e-34 149.1 111 64.9
Sopen03g007670 Solanum pennellii HOM05D004290 ORTHO05D005025 1.7e-33 146.4 136 50.7
AagrBONN_evm.TU.Sc2ySwM_344.2294 Anthoceros agrestis HOM05D004290 ORTHO05D005025 3.9e-33 145.2 138 49.3
CBR_g26184 Chara braunii HOM05D004290 ORTHO05D005025 1.9e-32 142.9 127 53.5
FAN22G2200 Fragaria x ananassa HOM05D004290 ORTHO05D005025 3.3e-32 142.1 199 41.2
ATR1147G035 Amborella trichopoda HOM05D004290 ORTHO05D005025 2.4e-30 136.0 150 46.0
QL03p036408 Quercus lobata HOM05D004290 ORTHO05D005025 1.5e-29 133.3 96 61.5
Cre03.g184400 Chlamydomonas reinhardtii HOM05D004290 ORTHO05D005025 5.8e-29 131.3 134 47.8
FvH4_4g28280 Fragaria vesca HOM05D004290 ORTHO05D005025 9.9e-29 130.6 133 48.9
Peaxi162Scf00367g00520 Petunia axillaris HOM05D004290 ORTHO05D005025 1.1e-27 127.1 129 52.7
FAN12G1909 Fragaria x ananassa HOM05D004290 ORTHO05D005025 2.4e-27 125.9 133 48.9
FAN09G1140 Fragaria x ananassa HOM05D005343 ORTHO05D007153 9.2e-27 124.0 95 60.0
PRCOL_00005217 Prasinoderma coloniale HOM05D004290 ORTHO05D005025 4.3e-24 115.2 126 50.0
MCO10G139 Micromonas commoda HOM05D004290 ORTHO05D005025 4.4e-21 105.1 125 42.4
Rhsim09G0114000 Rhododendron simsii HOM05D000436 ORTHO05D000678 4.6e-18 95.1 75 61.3
Solyc03g150121.1 Solanum lycopersicum HOM05D004290 ORTHO05D005025 7.8e-18 94.4 103 47.6
Oeu018290.1 Olea europaea HOM05D004290 ORTHO05D005025 3.9e-17 92.0 50 74.0
Nitab4.5_0005210g0010 Nicotiana tabacum HOM05D004290 ORTHO05D005025 6.6e-17 91.3 116 43.1
FAN02G2314 Fragaria x ananassa HOM05D004290 ORTHO05D005025 6.2e-15 84.7 65 64.6
RcHm_v2.0_Chr2g0142061 Rosa chinensis HOM05D004290 ORTHO05D005025 1.8e-14 83.2 63 63.5
RcHm_v2.0_Chr2g0142051 Rosa chinensis HOM05D004290 ORTHO05D005025 9.0e-14 80.9 50 64.0
Prupe.1G303300 Prunus persica HOM05D004290 ORTHO05D005025 2.6e-13 79.3 103 43.7
Aqoxy3G02627 Aquilegia oxysepala HOM05D004290 ORTHO05D005025 4.5e-13 78.6 72 48.6
vmacro10513 Vaccinium macrocarpon HOM05D004290 ORTHO05D005025 7.6e-13 77.8 66 60.6
MD13G1048800 Malus domestica HOM05D004290 ORTHO05D005025 9.9e-13 77.4 57 63.2
TAR629G2250 Trochodendron aralioides HOM05D004290 ORTHO05D005025 1.8e-09 66.6 37 67.6
Sopen03g019130 Solanum pennellii HOM05D006181 ORTHO05D008560 5.6e-08 61.6 63 50.8
Cre07.g336000 Chlamydomonas reinhardtii HOM05D065225 ORTHO05D044221 1.8e-06 56.6 69 47.8
FvH4_6g51211 Fragaria vesca HOM05D004290 ORTHO05D005025 9.0e-06 54.3 38 65.8


User provided reference genes

Program Settings