Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold14G06801 Striga asiatica HOM05D004290 ORTHO05D005025 3.6e-79 298.1 144 100.0
SGA_v2.0_scaffold14G06802 Striga asiatica HOM05D004290 ORTHO05D005025 6.5e-73 277.3 144 92.4
SalBow8G2020 Salvia bowleyana HOM05D004290 ORTHO05D005025 1.5e-53 213.0 136 72.1
Lj3A1022T62 Lonicera japonica HOM05D004290 ORTHO05D005025 6.0e-50 201.1 141 63.8
SalBow8G3034 Salvia bowleyana HOM05D004290 ORTHO05D005025 7.8e-50 200.7 134 67.2
unitig_744.g24286 Utricularia gibba HOM05D004290 ORTHO05D005025 1.0e-49 200.3 139 64.0
Cc11_g10790 Coffea canephora HOM05D004290 ORTHO05D005025 3.9e-49 198.4 141 65.2
Cc11_g10800 Coffea canephora HOM05D004290 ORTHO05D005025 6.6e-49 197.6 137 67.2
SalBow8G1203 Salvia bowleyana HOM05D004290 ORTHO05D005025 8.6e-49 197.2 141 64.5
SalBow8G5193 Salvia bowleyana HOM05D004290 ORTHO05D005025 8.6e-49 197.2 141 64.5
MSTRG.7697 Avicennia marina HOM05D004290 ORTHO05D005025 1.1e-48 196.8 135 68.9
HanXRQChr08g0214461 Helianthus annuus HOM05D004290 ORTHO05D005025 1.5e-48 196.4 134 67.2
Migut.L01112 Erythranthe guttata HOM05D004290 ORTHO05D005025 4.3e-48 194.9 136 65.4
QL03p037189 Quercus lobata HOM05D004290 ORTHO05D005025 4.3e-48 194.9 134 66.4
Dinv05808 Davidia involucrata HOM05D000436 ORTHO05D005025 5.6e-48 194.5 124 72.6
CiPaw.05G172700 Carya illinoinensis HOM05D004290 ORTHO05D005025 1.6e-47 193.0 138 64.5
Dinv16527 Davidia involucrata HOM05D004290 ORTHO05D005025 1.6e-47 193.0 124 72.6
Nitab4.5_0013408g0010 Nicotiana tabacum HOM05D004290 ORTHO05D005025 2.8e-47 192.2 137 63.5
Nitab4.5_0001178g0080 Nicotiana tabacum HOM05D004290 ORTHO05D005025 4.7e-47 191.4 137 63.5
COL.COLO4_07852 Corchorus olitorius HOM05D004290 ORTHO05D005025 6.2e-47 191.0 131 67.2
Solyc05g010015.1 Solanum lycopersicum HOM05D004290 ORTHO05D005025 6.2e-47 191.0 137 65.0
CANSAT64G1327 Cannabis sativa HOM05D004290 ORTHO05D005025 8.0e-47 190.7 133 65.4
CiPaw.05G172800 Carya illinoinensis HOM05D004290 ORTHO05D005025 8.0e-47 190.7 138 64.5
Sopen05g005830 Solanum pennellii HOM05D004290 ORTHO05D005025 8.0e-47 190.7 137 65.7
Duzib251G0274 Durio zibethinus HOM05D004290 ORTHO05D005025 1.1e-46 190.3 141 61.0
RcHm_v2.0_Chr4g0436191 Rosa chinensis HOM05D004290 ORTHO05D005025 1.8e-46 189.5 139 61.9
Ah.02g127350 Amaranthus hybridus HOM05D004290 ORTHO05D005025 4.0e-46 188.3 132 65.9
MELO3C012202.2 Cucumis melo HOM05D004290 ORTHO05D005025 4.0e-46 188.3 139 56.8
FAN12G2228 Fragaria x ananassa HOM05D004290 ORTHO05D005025 5.2e-46 188.0 141 59.6
Nn4g23673 Nelumbo nucifera HOM05D004290 ORTHO05D005025 5.2e-46 188.0 139 61.9
Thecc.02G363400 Theobroma cacao HOM05D004290 ORTHO05D005025 5.2e-46 188.0 141 59.6
Potri.008G114300 Populus trichocarpa HOM05D004290 ORTHO05D005025 1.2e-45 186.8 140 62.1
Aa31sc79G10 Aethionema arabicum HOM05D004290 ORTHO05D005025 1.5e-45 186.4 141 61.7
Ciclev10033020m.g Citrus clementina HOM05D004290 ORTHO05D005025 1.5e-45 186.4 139 61.9
CsaV3_5G033840 Cucumis sativus L. HOM05D004290 ORTHO05D005025 1.5e-45 186.4 136 58.1
DCAR_026707 Daucus carota HOM05D004290 ORTHO05D005025 1.5e-45 186.4 140 61.4
FvH4_4g28340 Fragaria vesca HOM05D004290 ORTHO05D005025 1.5e-45 186.4 141 58.9
FAN22G0640 Fragaria x ananassa HOM05D004290 ORTHO05D005025 1.5e-45 186.4 141 58.9
EL10Ac6g14527 Beta vulgaris HOM05D004290 ORTHO05D005025 2.0e-45 186.0 134 63.4
Sabra08G0086600 Salix brachista HOM05D004290 ORTHO05D005025 2.6e-45 185.7 140 61.4
Sp5g23870 Schrenkiella parvula HOM05D004290 ORTHO05D005025 3.4e-45 185.3 141 58.9
GSVIVG01011978001 Vitis vinifera HOM05D004290 ORTHO05D005025 3.4e-45 185.3 144 61.8
Aqoxy3G03864 Aquilegia oxysepala HOM05D004290 ORTHO05D005025 4.4e-45 184.9 134 62.7
Hund05546 Selenicereus undatus HOM05D004290 ORTHO05D005025 4.4e-45 184.9 135 63.0
DCAR_023699 Daucus carota HOM05D004290 ORTHO05D005025 9.8e-45 183.7 141 56.7
Manes.06G074500 Manihot esculenta HOM05D004290 ORTHO05D005025 9.8e-45 183.7 136 62.5
Sc04g0006830 Simmondsia chinensis HOM05D004290 ORTHO05D005025 9.8e-45 183.7 139 61.2
THA.LOC104821971 Tarenaya hassleriana HOM05D004290 ORTHO05D005025 9.8e-45 183.7 136 62.5
FAN17G1675 Fragaria x ananassa HOM05D004290 ORTHO05D005025 1.3e-44 183.3 141 58.2
Eucgr.B03066 Eucalyptus grandis HOM05D004290 ORTHO05D005025 1.7e-44 183.0 142 64.1
TWI31G0716 Tripterygium wilfordii HOM05D004290 ORTHO05D005025 1.7e-44 183.0 142 60.6
ECA234G2024 Erigeron canadensis HOM05D004290 ORTHO05D005025 2.2e-44 182.6 136 61.0
ClCG00G001430 Citrullus lanatus HOM05D004290 ORTHO05D005025 2.9e-44 182.2 139 56.1
ClCG05G023160 Citrullus lanatus HOM05D004290 ORTHO05D005025 2.9e-44 182.2 139 56.1
Ca_19617_v3 Cicer arietinum L. HOM05D004290 ORTHO05D005025 3.7e-44 181.8 145 60.0
Ca_30768_v3 Cicer arietinum L. HOM05D004290 ORTHO05D005025 3.7e-44 181.8 145 60.0
Oeu044394.1 Olea europaea HOM05D004290 ORTHO05D005025 3.7e-44 181.8 129 69.0
Potri.008G114400 Populus trichocarpa HOM05D004290 ORTHO05D005025 3.7e-44 181.8 138 62.3
arahy.Tifrunner.gnm1.ann1.IBNT6Z Arachis hypogaea HOM05D004290 ORTHO05D005025 6.4e-44 181.0 142 59.9
arahy.Tifrunner.gnm1.ann1.U655LF Arachis hypogaea HOM05D004290 ORTHO05D005025 6.4e-44 181.0 142 59.9
PSO478G2631 Papaver somniferum HOM05D004290 ORTHO05D005025 6.4e-44 181.0 138 60.9
HanXRQChr16g0528791 Helianthus annuus HOM05D004290 ORTHO05D005025 1.1e-43 180.3 139 60.4
Gohir.A13G071200 Gossypium hirsutum HOM05D004290 ORTHO05D005025 1.4e-43 179.9 141 58.9
PGR102G2310 Punica granatum HOM05D004290 ORTHO05D005025 2.4e-43 179.1 140 64.3
BcaB05g24409 Brassica carinata HOM05D004290 ORTHO05D005025 3.2e-43 178.7 134 60.4
Gohir.D13G069200 Gossypium hirsutum HOM05D004290 ORTHO05D005025 3.2e-43 178.7 141 58.9
Gorai.013G079300 Gossypium raimondii HOM05D004290 ORTHO05D005025 3.2e-43 178.7 141 58.9
Lj2g0025619 Lotus japonicus HOM05D004290 ORTHO05D005025 3.2e-43 178.7 140 64.3
QL03p036461 Quercus lobata HOM05D004290 ORTHO05D005025 3.2e-43 178.7 141 58.2
MSTRG.13496 Avicennia marina HOM05D004290 ORTHO05D005025 4.1e-43 178.3 137 62.8
Haze_11793 Corylus avellana HOM05D004290 ORTHO05D005025 4.1e-43 178.3 150 56.0
MD13G1049100 Malus domestica HOM05D004290 ORTHO05D005025 4.1e-43 178.3 141 61.7
Sed0009817 Sechium edule HOM05D004290 ORTHO05D005025 4.1e-43 178.3 134 58.2
AT1G68760 Arabidopsis thaliana HOM05D004290 ORTHO05D005025 5.4e-43 177.9 141 56.7
CARHR061580 Cardamine hirsuta HOM05D004290 ORTHO05D005025 5.4e-43 177.9 141 56.7
AL2G27690 Arabidopsis lyrata HOM05D004290 ORTHO05D005025 7.0e-43 177.6 141 56.7
Lsat_1_v5_gn_8_37520 Lactuca sativa HOM05D004290 ORTHO05D005025 7.0e-43 177.6 129 63.6
A02p15320 Brassica napus HOM05D004290 ORTHO05D005025 1.2e-42 176.8 136 60.3
BraA02t06593Z Brassica rapa HOM05D004290 ORTHO05D005025 1.2e-42 176.8 135 60.7
ECA233G1907 Erigeron canadensis HOM05D004290 ORTHO05D005025 1.2e-42 176.8 136 61.8
MELO3C005349.2 Cucumis melo HOM05D004290 ORTHO05D005025 1.6e-42 176.4 139 60.4
Glyma.01G090900 Glycine max HOM05D004290 ORTHO05D005025 1.6e-42 176.4 139 62.6
Cfa008781 Carpinus fangiana HOM05D004290 ORTHO05D005025 2.1e-42 176.0 146 57.5
DCAR_017507 Daucus carota HOM05D004290 ORTHO05D005025 2.1e-42 176.0 140 55.7
DCAR_026708 Daucus carota HOM05D004290 ORTHO05D005025 2.1e-42 176.0 140 55.7
C02p25170 Brassica napus HOM05D004290 ORTHO05D005025 2.7e-42 175.6 135 60.7
CsaV3_5G028890 Cucumis sativus L. HOM05D004290 ORTHO05D005025 2.7e-42 175.6 139 59.7
Prupe.1G302800 Prunus persica HOM05D004290 ORTHO05D005025 3.5e-42 175.3 137 62.8
RcHm_v2.0_Chr6g0244161 Rosa chinensis HOM05D004290 ORTHO05D005025 3.5e-42 175.3 135 61.5
Prupe.1G303000 Prunus persica HOM05D004290 ORTHO05D005025 4.6e-42 174.9 140 57.9
Sed0004732 Sechium edule HOM05D004290 ORTHO05D005025 4.6e-42 174.9 137 62.0
Lalb_Chr04g0255051 Lupinus albus HOM05D004290 ORTHO05D005025 6.0e-42 174.5 142 59.2
ClCG05G023170 Citrullus lanatus HOM05D004290 ORTHO05D005025 7.8e-42 174.1 134 55.2
MD13G1048900 Malus domestica HOM05D004290 ORTHO05D005025 1.0e-41 173.7 141 58.2
Aqoxy3G03865 Aquilegia oxysepala HOM05D004290 ORTHO05D005025 1.3e-41 173.3 140 57.1
C04p37630 Brassica napus HOM05D004290 ORTHO05D005025 1.3e-41 173.3 135 60.0
CDE10G0275 Ceratophyllum demersum HOM05D004290 ORTHO05D005025 1.3e-41 173.3 138 58.7
Thhalv10019297m.g Eutrema salsugineum HOM05D004290 ORTHO05D005025 1.3e-41 173.3 143 57.3
HPP92_021836 Vanilla planifolia HOM05D004290 ORTHO05D005025 1.3e-41 173.3 136 56.6
FvH4_6g24180 Fragaria vesca HOM05D004290 ORTHO05D005025 1.7e-41 172.9 134 59.7
FAN14G4265 Fragaria x ananassa HOM05D004290 ORTHO05D005025 1.7e-41 172.9 134 59.7
BolC2t08596H Brassica oleracea HOM05D004290 ORTHO05D005025 2.3e-41 172.6 135 60.0
ATR1147G043 Amborella trichopoda HOM05D004290 ORTHO05D005025 3.0e-41 172.2 141 54.6
Phvul.003G024900 Phaseolus vulgaris HOM05D004290 ORTHO05D005025 3.9e-41 171.8 132 62.1
Psat2g074600 Pisum sativum HOM05D004290 ORTHO05D005025 3.9e-41 171.8 141 58.9
FAN09G0247 Fragaria x ananassa HOM05D004290 ORTHO05D005025 5.0e-41 171.4 134 59.7
HanXRQChr16g0528801 Helianthus annuus HOM05D004290 ORTHO05D005025 5.0e-41 171.4 137 57.7
Medtr5g062660 Medicago truncatula HOM05D004290 ORTHO05D005025 5.0e-41 171.4 145 60.0
Lsat_1_v5_gn_4_17281 Lactuca sativa HOM05D004290 ORTHO05D005025 8.6e-41 170.6 136 59.6
FAN12G2396 Fragaria x ananassa HOM05D004290 ORTHO05D005025 1.9e-40 169.5 134 60.4
MBI10_g35795_MAGBIO Magnolia biondii HOM05D004290 ORTHO05D005025 2.5e-40 169.1 128 60.9
FvH4_4g28300 Fragaria vesca HOM05D004290 ORTHO05D005025 4.3e-40 168.3 134 60.4
RcHm_v2.0_Chr2g0142071 Rosa chinensis HOM05D004290 ORTHO05D005025 4.3e-40 168.3 133 60.2
RcHm_v2.0_Chr2g0142081 Rosa chinensis HOM05D004290 ORTHO05D005025 4.3e-40 168.3 133 60.2
RcHm_v2.0_Chr2g0142111 Rosa chinensis HOM05D004290 ORTHO05D005025 4.3e-40 168.3 133 60.2
Carub.0002s1532 Capsella rubella HOM05D004290 ORTHO05D005025 5.6e-40 167.9 141 54.6
AUR62007751 Chenopodium quinoa HOM05D004290 ORTHO05D005025 5.6e-40 167.9 135 57.8
RcHm_v2.0_Chr4g0436181 Rosa chinensis HOM05D004290 ORTHO05D005025 9.5e-40 167.2 134 60.4
TPR.G33571 Trifolium pratense HOM05D004290 ORTHO05D005025 1.2e-39 166.8 148 58.1
FAN09G2488 Fragaria x ananassa HOM05D004290 ORTHO05D005025 1.6e-39 166.4 135 59.3
Peaxi162Scf00118g01310 Petunia axillaris HOM05D004290 ORTHO05D005025 2.1e-39 166.0 134 53.7
RcHm_v2.0_Chr2g0142121 Rosa chinensis HOM05D004290 ORTHO05D005025 2.8e-39 165.6 133 58.6
FvH4_4g28310 Fragaria vesca HOM05D004290 ORTHO05D005025 6.2e-39 164.5 132 57.6
FAN12G0523 Fragaria x ananassa HOM05D004290 ORTHO05D005025 6.2e-39 164.5 132 57.6
CSS0026618 Camellia sinensis var. sinensis HOM05D004290 ORTHO05D005025 1.1e-38 163.7 144 53.5
AUR62002942 Chenopodium quinoa HOM05D004290 ORTHO05D005025 1.1e-38 163.7 135 57.0
FAN07G1902 Fragaria x ananassa HOM05D004290 ORTHO05D005025 1.4e-38 163.3 134 58.2
Pp3c20_17780 Physcomitrium patens HOM05D004290 ORTHO05D005025 1.8e-38 162.9 132 54.5
PGSC0003DMG400030259 Solanum tuberosum HOM05D004290 ORTHO05D005025 2.3e-38 162.5 136 52.2
Solyc03g043860.2 Solanum lycopersicum HOM05D004290 ORTHO05D005025 6.8e-38 161.0 136 51.5
MD16G1050100 Malus domestica HOM05D004290 ORTHO05D005025 8.9e-38 160.6 135 57.0
MD16G1050200 Malus domestica HOM05D004290 ORTHO05D005025 8.9e-38 160.6 134 58.2
BcaC03g14984 Brassica carinata HOM05D004290 ORTHO05D005025 1.5e-37 159.8 134 56.7
ClCG01G005800 Citrullus lanatus HOM05D004290 ORTHO05D005025 1.5e-37 159.8 177 46.9
Prupe.1G302900 Prunus persica HOM05D004290 ORTHO05D005025 4.4e-37 158.3 137 56.9
RcHm_v2.0_Chr4g0436151 Rosa chinensis HOM05D004290 ORTHO05D005025 3.7e-36 155.2 142 54.2
Prupe.1G303100 Prunus persica HOM05D004290 ORTHO05D005025 6.4e-36 154.5 137 55.5
Mapoly0059s0094 Marchantia polymorpha HOM05D004290 ORTHO05D005025 1.4e-35 153.3 141 51.1
Actinidia14836 Actinidia chinensis HOM05D000436 ORTHO05D000678 2.4e-35 152.5 112 67.9
Peaxi162Scf00367g00519 Petunia axillaris HOM05D004290 ORTHO05D005025 7.1e-35 151.0 137 53.3
Prupe.1G300800 Prunus persica HOM05D004290 ORTHO05D005025 1.6e-34 149.8 135 54.8
CAN.G184.70 Capsicum annuum HOM05D004290 ORTHO05D005025 2.1e-34 149.4 111 63.1
AagrBONN_evm.TU.Sc2ySwM_344.2294 Anthoceros agrestis HOM05D004290 ORTHO05D005025 7.8e-34 147.5 138 49.3
CBR_g26184 Chara braunii HOM05D004290 ORTHO05D005025 5.6e-32 141.4 127 52.8
Sopen03g007670 Solanum pennellii HOM05D004290 ORTHO05D005025 7.3e-32 141.0 136 47.1
QL03p036408 Quercus lobata HOM05D004290 ORTHO05D005025 8.1e-31 137.5 96 63.5
Cre03.g184400 Chlamydomonas reinhardtii HOM05D004290 ORTHO05D005025 1.4e-30 136.7 134 49.3
FAN22G2200 Fragaria x ananassa HOM05D004290 ORTHO05D005025 4.4e-29 131.7 199 39.2
ATR1147G035 Amborella trichopoda HOM05D004290 ORTHO05D005025 3.8e-28 128.6 150 42.7
FvH4_4g28280 Fragaria vesca HOM05D004290 ORTHO05D005025 5.4e-27 124.8 133 46.6
FAN12G1909 Fragaria x ananassa HOM05D004290 ORTHO05D005025 4.6e-26 121.7 133 47.4
Peaxi162Scf00367g00520 Petunia axillaris HOM05D004290 ORTHO05D005025 7.8e-26 120.9 129 49.6
FAN09G1140 Fragaria x ananassa HOM05D005343 ORTHO05D007153 2.3e-25 119.4 95 55.8
PRCOL_00005217 Prasinoderma coloniale HOM05D004290 ORTHO05D005025 1.5e-24 116.7 127 50.4
MCO10G139 Micromonas commoda HOM05D004290 ORTHO05D005025 1.4e-22 110.2 124 45.2
Rhsim09G0114000 Rhododendron simsii HOM05D000436 ORTHO05D000678 1.1e-19 100.5 102 53.9
Solyc03g150121.1 Solanum lycopersicum HOM05D004290 ORTHO05D005025 2.1e-18 96.3 103 46.6
Oeu018290.1 Olea europaea HOM05D004290 ORTHO05D005025 8.7e-17 90.9 50 72.0
Nitab4.5_0005210g0010 Nicotiana tabacum HOM05D004290 ORTHO05D005025 3.3e-16 89.0 116 41.4
FAN02G2314 Fragaria x ananassa HOM05D004290 ORTHO05D005025 4.8e-15 85.1 78 59.0
RcHm_v2.0_Chr2g0142061 Rosa chinensis HOM05D004290 ORTHO05D005025 3.1e-14 82.4 63 63.5
vmacro10513 Vaccinium macrocarpon HOM05D004290 ORTHO05D005025 7.6e-13 77.8 66 59.1
MD13G1048800 Malus domestica HOM05D004290 ORTHO05D005025 2.2e-12 76.3 57 63.2
RcHm_v2.0_Chr2g0142051 Rosa chinensis HOM05D004290 ORTHO05D005025 3.8e-12 75.5 50 58.0
Prupe.1G303300 Prunus persica HOM05D004290 ORTHO05D005025 2.4e-11 72.8 103 41.7
Aqoxy3G02627 Aquilegia oxysepala HOM05D004290 ORTHO05D005025 3.2e-11 72.4 72 43.1
TAR629G2250 Trochodendron aralioides HOM05D004290 ORTHO05D005025 3.0e-09 65.9 37 64.9
Sopen03g019130 Solanum pennellii HOM05D006181 ORTHO05D008560 4.3e-08 62.0 63 49.2
Cre07.g336000 Chlamydomonas reinhardtii HOM05D065225 ORTHO05D044221 9.6e-08 60.8 69 49.3


User provided reference genes

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