Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold149G36610 Striga asiatica HOM05D004272 ORTHO05D005020 6.4e-260 900.2 446 100.0
Migut.N03339 Erythranthe guttata HOM05D004272 ORTHO05D005020 1.4e-121 440.7 395 58.7
SalBow6G4901 Salvia bowleyana HOM05D004272 ORTHO05D005020 2.4e-118 429.9 431 55.5
SalBow6G0059 Salvia bowleyana HOM05D004272 ORTHO05D005020 1.7e-116 423.7 431 55.5
Oeu004773.1 Olea europaea HOM05D004272 ORTHO05D005020 3.9e-116 422.5 424 55.0
Oeu030010.1 Olea europaea HOM05D004272 ORTHO05D005020 3.6e-114 416.0 406 55.4
Peaxi162Scf00268g01426 Petunia axillaris HOM05D004272 ORTHO05D005020 3.5e-109 399.4 400 53.2
Nitab4.5_0006059g0040 Nicotiana tabacum HOM05D004272 ORTHO05D005020 1.1e-107 394.4 407 52.3
Cc00_g04120 Coffea canephora HOM05D004272 ORTHO05D005020 7.4e-107 391.7 424 51.9
CiPaw.16G063800 Carya illinoinensis HOM05D004272 ORTHO05D005020 3.4e-104 382.9 413 53.0
Solyc06g065480.4 Solanum lycopersicum HOM05D004272 ORTHO05D005020 3.4e-104 382.9 400 51.5
Sopen06g023970 Solanum pennellii HOM05D004272 ORTHO05D005020 3.4e-104 382.9 410 51.5
Actinidia02597 Actinidia chinensis HOM05D004272 ORTHO05D005020 1.1e-102 377.9 423 48.7
QL02p034274 Quercus lobata HOM05D004272 ORTHO05D005020 1.1e-102 377.9 394 52.8
Sopen11g008950 Solanum pennellii HOM05D004272 ORTHO05D005020 1.4e-102 377.5 411 50.9
CSS0015299 Camellia sinensis var. sinensis HOM05D004272 ORTHO05D005020 2.5e-102 376.7 431 50.1
Dinv12903 Davidia involucrata HOM05D004272 ORTHO05D005020 3.2e-102 376.3 421 50.6
Solyc11g016990.3 Solanum lycopersicum HOM05D004272 ORTHO05D005020 7.1e-102 375.2 410 50.5
GSVIVG01034890001 Vitis vinifera HOM05D004272 ORTHO05D005020 1.6e-101 374.0 410 51.0
Manes.18G099100 Manihot esculenta HOM05D004272 ORTHO05D005020 4.6e-101 372.5 418 49.8
CANSAT25G2208 Cannabis sativa HOM05D004272 ORTHO05D005020 1.8e-100 370.5 404 49.0
FvH4_2g12360 Fragaria vesca HOM05D004272 ORTHO05D005020 1.8e-100 370.5 403 50.6
FAN24G2414 Fragaria x ananassa HOM05D004272 ORTHO05D005020 1.8e-100 370.5 403 50.6
Ciclev10001727m.g Citrus clementina HOM05D004272 ORTHO05D005020 2.3e-100 370.2 402 50.5
FAN20G0830 Fragaria x ananassa HOM05D004272 ORTHO05D005020 3.0e-100 369.8 396 51.3
Rhsim06G0099300 Rhododendron simsii HOM05D004272 ORTHO05D005020 3.9e-100 369.4 441 49.2
CiPaw.15G083400 Carya illinoinensis HOM05D004272 ORTHO05D005020 8.7e-100 368.2 421 50.6
THA.LOC104800104 Tarenaya hassleriana HOM05D004272 ORTHO05D005020 1.5e-99 367.5 408 49.0
CAN.G199.25 Capsicum annuum HOM05D004272 ORTHO05D005020 2.5e-99 366.7 295 62.4
Atru.chr13.1851 Acer truncatum HOM05D004272 ORTHO05D005020 3.3e-99 366.3 445 47.9
Prupe.8G052200 Prunus persica HOM05D004272 ORTHO05D005020 7.4e-99 365.2 410 49.3
Rhsim11G0061700 Rhododendron simsii HOM05D004272 ORTHO05D005020 9.6e-99 364.8 423 48.0
Rhsim11G0063200 Rhododendron simsii HOM05D004272 ORTHO05D005020 9.6e-99 364.8 423 48.0
RcHm_v2.0_Chr6g0272381 Rosa chinensis HOM05D004272 ORTHO05D005020 9.6e-99 364.8 398 50.5
arahy.Tifrunner.gnm1.ann1.6Q1IL7 Arachis hypogaea HOM05D004272 ORTHO05D005020 1.3e-98 364.4 407 49.6
Sabra13G0097600 Salix brachista HOM05D004272 ORTHO05D005020 1.6e-98 364.0 411 48.4
VMungo0720G1438 Vigna mungo HOM05D004272 ORTHO05D005020 1.6e-98 364.0 410 48.8
Potri.013G115400 Populus trichocarpa HOM05D004272 ORTHO05D005020 2.1e-98 363.6 410 49.0
arahy.Tifrunner.gnm1.ann1.CBRY2G Arachis hypogaea HOM05D004272 ORTHO05D005020 2.8e-98 363.2 407 49.4
Sp5g26920 Schrenkiella parvula HOM05D004272 ORTHO05D005020 3.7e-98 362.8 421 48.2
SpUn0020_0060 Schrenkiella parvula HOM05D004272 ORTHO05D005020 3.7e-98 362.8 421 48.2
unitig_61.g26072 Utricularia gibba HOM05D004272 ORTHO05D005020 3.7e-98 362.8 423 47.3
FAN27G2909 Fragaria x ananassa HOM05D004272 ORTHO05D005020 4.8e-98 362.5 396 50.3
Gohir.A09G116800 Gossypium hirsutum HOM05D004272 ORTHO05D005020 6.2e-98 362.1 413 47.5
Phvul.007G087900 Phaseolus vulgaris HOM05D004272 ORTHO05D005020 6.2e-98 362.1 406 49.8
MD10G1045300 Malus domestica HOM05D004272 ORTHO05D005020 2.4e-97 360.1 410 48.3
Gohir.D09G113700 Gossypium hirsutum HOM05D004272 ORTHO05D005020 4.0e-97 359.4 416 47.1
Gorai.006G131400 Gossypium raimondii HOM05D004272 ORTHO05D005020 5.3e-97 359.0 413 47.2
Haze_17897 Corylus avellana HOM05D004272 ORTHO05D005020 9.0e-97 358.2 471 46.5
Eucgr.F04145 Eucalyptus grandis HOM05D004272 ORTHO05D005020 1.5e-96 357.5 409 49.9
Migut.C01228 Erythranthe guttata HOM05D004272 ORTHO05D005020 2.6e-96 356.7 418 49.5
Lj7C302G8 Lonicera japonica HOM05D004272 ORTHO05D005020 2.6e-96 356.7 399 52.4
Thecc.08G200200 Theobroma cacao HOM05D004272 ORTHO05D005020 1.3e-95 354.4 413 47.2
Thhalv10018624m.g Eutrema salsugineum HOM05D004272 ORTHO05D005020 2.9e-95 353.2 445 46.1
Nitab4.5_0000159g0070 Nicotiana tabacum HOM05D004272 ORTHO05D005020 4.9e-95 352.4 307 59.3
Carub.0002s1862 Capsella rubella HOM05D004272 ORTHO05D005020 8.4e-95 351.7 397 49.1
Ca_10628_v3 Cicer arietinum L. HOM05D004272 ORTHO05D005020 4.2e-94 349.4 406 47.8
Aa31LG4G8760 Aethionema arabicum HOM05D004272 ORTHO05D005020 5.5e-94 349.0 411 47.7
Cpa.g.sc64.134 Carica papaya HOM05D004272 ORTHO05D005020 7.1e-94 348.6 413 48.2
Glyma.10G218100 Glycine max HOM05D004272 ORTHO05D005020 7.1e-94 348.6 411 48.4
Glyma.20G173700 Glycine max HOM05D004272 ORTHO05D005020 7.1e-94 348.6 414 49.0
C06p45930 Brassica napus HOM05D004272 ORTHO05D005020 1.6e-93 347.4 400 48.2
Aqoxy6G00139 Aquilegia oxysepala HOM05D004272 ORTHO05D005020 2.1e-93 347.1 398 48.7
BcaC08g46620 Brassica carinata HOM05D004272 ORTHO05D005020 3.5e-93 346.3 400 48.2
BolC6t39646H Brassica oleracea HOM05D004272 ORTHO05D005020 3.5e-93 346.3 400 48.2
AT1G71860 Arabidopsis thaliana HOM05D004272 ORTHO05D005020 4.6e-93 345.9 395 48.1
Hma1.2p1_0510F.1_g168790 Hydrangea macrophylla HOM05D004272 ORTHO05D005020 1.0e-92 344.7 392 49.7
PSO170G2262 Papaver somniferum HOM05D004272 ORTHO05D005020 1.0e-92 344.7 380 50.0
Sed0022323 Sechium edule HOM05D004272 ORTHO05D005020 1.8e-92 344.0 450 45.6
TPR.G15693 Trifolium pratense HOM05D004272 ORTHO05D005020 2.3e-92 343.6 438 45.4
Lj5g0022070 Lotus japonicus HOM05D004272 ORTHO05D005020 3.0e-92 343.2 408 47.1
AL2G31440 Arabidopsis lyrata HOM05D004272 ORTHO05D005020 3.9e-92 342.8 397 47.9
MELO3C018159.2 Cucumis melo HOM05D004272 ORTHO05D005020 3.9e-92 342.8 406 47.8
Lalb_Chr06g0161911 Lupinus albus HOM05D004272 ORTHO05D005020 1.1e-91 341.3 406 45.6
BcaC08g46618 Brassica carinata HOM05D004272 ORTHO05D005020 1.5e-91 340.9 415 47.7
Lsat_1_v5_gn_5_157280 Lactuca sativa HOM05D004272 ORTHO05D005020 1.9e-91 340.5 476 42.6
Medtr1g096990 Medicago truncatula HOM05D004272 ORTHO05D005020 1.9e-91 340.5 386 47.9
MD05G1039700 Malus domestica HOM05D004272 ORTHO05D005020 1.6e-90 337.4 392 48.5
A07p38020 Brassica napus HOM05D004272 ORTHO05D005020 2.8e-90 336.7 401 47.6
BraA07t31367Z Brassica rapa HOM05D004272 ORTHO05D005020 2.8e-90 336.7 401 47.4
DCAR_010068 Daucus carota HOM05D004272 ORTHO05D005020 3.1e-89 333.2 392 46.9
HanXRQChr13g0388201 Helianthus annuus HOM05D004272 ORTHO05D005020 3.1e-89 333.2 400 45.8
CARHR289070 Cardamine hirsuta HOM05D004272 ORTHO05D005020 4.1e-89 332.8 296 57.4
CsaV3_7G024250 Cucumis sativus L. HOM05D004272 ORTHO05D005020 5.9e-88 328.9 441 45.1
Nitab4.5_0003518g0050 Nicotiana tabacum HOM05D004272 ORTHO05D005020 7.7e-88 328.6 304 57.9
Duzib116G0407 Durio zibethinus HOM05D004272 ORTHO05D005020 1.0e-87 328.2 491 41.1
TAR381G1009 Trochodendron aralioides HOM05D004272 ORTHO05D005020 1.7e-87 327.4 379 49.1
Sc01g0001660 Simmondsia chinensis HOM05D004272 ORTHO05D005020 8.5e-87 325.1 414 46.1
TWI60G0092 Tripterygium wilfordii HOM05D004272 ORTHO05D005020 1.9e-86 323.9 246 63.4
Manes.02G190000 Manihot esculenta HOM05D004272 ORTHO05D005020 3.2e-86 323.2 244 63.1
EL10Ac1g00062 Beta vulgaris HOM05D004272 ORTHO05D005020 2.1e-85 320.5 359 47.6
ATR0687G002 Amborella trichopoda HOM05D004272 ORTHO05D005020 5.1e-84 315.8 429 42.9
vmacro12508 Vaccinium macrocarpon HOM05D004272 ORTHO05D005020 6.7e-84 315.5 405 44.7
Hund27072 Selenicereus undatus HOM05D004272 ORTHO05D005020 1.1e-83 314.7 390 45.1
AUR62004668 Chenopodium quinoa HOM05D004272 ORTHO05D005020 2.2e-82 310.5 293 54.6
CAN.G61.12 Capsicum annuum HOM05D004272 ORTHO05D005020 1.4e-81 307.8 279 57.7
SGA_v2.0_scaffold483G52343 Striga asiatica HOM05D004272 ORTHO05D005020 2.2e-79 300.4 155 92.9
PSO782G4024 Papaver somniferum HOM05D004272 ORTHO05D005020 2.5e-78 297.0 372 46.0
AUR62023587 Chenopodium quinoa HOM05D004272 ORTHO05D005020 3.2e-78 296.6 285 54.0
HPP92_003132 Vanilla planifolia HOM05D004272 ORTHO05D005020 9.4e-78 295.0 364 44.8
PSO170G2167 Papaver somniferum HOM05D004272 ORTHO05D005020 3.6e-77 293.1 376 44.9
Nn5g27830 Nelumbo nucifera HOM05D004272 ORTHO05D005020 1.0e-76 291.6 375 45.9
Hund16809 Selenicereus undatus HOM05D004272 ORTHO05D005020 3.9e-76 289.7 389 41.9
RcHm_v2.0_Chr7g0181531 Rosa chinensis HOM05D004272 ORTHO05D005020 4.4e-75 286.2 389 46.5
arahy.Tifrunner.gnm1.ann1.E3548W Arachis hypogaea HOM05D004272 ORTHO05D005020 2.8e-74 283.5 228 60.5
RcHm_v2.0_Chr3g0456471 Rosa chinensis HOM05D004272 ORTHO05D005020 3.7e-74 283.1 292 52.4
MD09G1287400 Malus domestica HOM05D004272 ORTHO05D005020 1.4e-73 281.2 460 40.0
ClCG09G010370 Citrullus lanatus HOM05D004272 ORTHO05D005020 2.4e-73 280.4 373 44.2
FvH4_5g14850 Fragaria vesca HOM05D004272 ORTHO05D005020 2.4e-73 280.4 395 45.6
FAN18G3209 Fragaria x ananassa HOM05D004272 ORTHO05D005020 1.2e-72 278.1 381 45.9
FAN08G2250 Fragaria x ananassa HOM05D004272 ORTHO05D005020 1.3e-71 274.6 390 42.6
FAN13G2363 Fragaria x ananassa HOM05D004272 ORTHO05D005020 3.2e-70 270.0 392 42.3
Prupe.1G402600 Prunus persica HOM05D004272 ORTHO05D005020 6.1e-69 265.8 262 55.3
SHI09047 Sapria himalayana HOM05D004272 ORTHO05D005020 1.0e-68 265.0 305 45.9
DCAR_014268 Daucus carota HOM05D004272 ORTHO05D005020 1.4e-68 264.6 426 38.7
ECA248G3752 Erigeron canadensis HOM05D004272 ORTHO05D005020 2.0e-67 260.8 379 42.5
HanXRQChr13g0388211 Helianthus annuus HOM05D004272 ORTHO05D005020 4.8e-66 256.1 341 42.8
Nitab4.5_0029014g0010 Nicotiana tabacum HOM05D004272 ORTHO05D005020 8.2e-66 255.4 313 46.3
Hund16808 Selenicereus undatus HOM05D004272 ORTHO05D005020 2.5e-62 243.8 383 38.6
Ah.05g177840 Amaranthus hybridus HOM05D004272 ORTHO05D005020 1.5e-59 234.6 394 37.8
vmacro00781 Vaccinium macrocarpon HOM05D004272 ORTHO05D005020 5.7e-59 232.6 426 38.3
Psat6g189360 Pisum sativum HOM05D004272 ORTHO05D005020 2.8e-58 230.3 341 40.5
MELO3C023674.2 Cucumis melo HOM05D004272 ORTHO05D005020 1.2e-56 224.9 325 41.5
Mapoly0167s0026 Marchantia polymorpha HOM05D004272 ORTHO05D005020 2.7e-53 213.8 290 41.4
ECA248G0749 Erigeron canadensis HOM05D004272 ORTHO05D005020 1.1e-49 201.8 279 40.5
Pp3c3_2290 Physcomitrium patens HOM05D004272 ORTHO05D005020 1.2e-48 198.4 285 38.2
Pp3c13_6130 Physcomitrium patens HOM05D004272 ORTHO05D005020 2.9e-47 193.7 290 38.3
SMO347G0125 Selaginella moellendorffii HOM05D004272 ORTHO05D005020 1.5e-46 191.4 289 39.1
Os12g0174800 Oryza sativa ssp. japonica HOM05D004272 ORTHO05D005020 2.5e-46 190.7 353 35.1
SEGI_33079 Sequoiadendron giganteum HOM05D004272 ORTHO05D005020 5.5e-46 189.5 155 56.8
Potri.019G086001 Populus trichocarpa HOM05D004272 ORTHO05D005020 6.1e-45 186.0 167 53.9
Os11g0180200 Oryza sativa ssp. japonica HOM05D004272 ORTHO05D005020 5.7e-43 179.5 237 44.3
CBR_g17924 Chara braunii HOM05D004272 ORTHO05D005020 4.1e-41 173.3 231 38.5
Dinv41680 Davidia involucrata HOM05D004272 ORTHO05D005020 4.1e-41 173.3 105 75.2
PGSC0003DMG400024543 Solanum tuberosum HOM05D004272 ORTHO05D005020 1.6e-37 161.4 178 48.9
Cre12.g524450 Chlamydomonas reinhardtii HOM05D004272 ORTHO05D005020 8.3e-34 149.1 319 31.7
AagrBONN_evm.TU.Sc2ySwM_228.1486 Anthoceros agrestis HOM05D004272 ORTHO05D005020 1.9e-33 147.9 289 32.5
TPR.G15698 Trifolium pratense HOM05D004272 ORTHO05D005020 3.2e-33 147.1 101 66.3
Zm00001eb091350 Zea mays HOM05D004272 ORTHO05D005020 2.0e-32 144.4 454 29.3
CBR_g49956 Chara braunii HOM05D004272 ORTHO05D005020 6.0e-32 142.9 239 37.2
SGA_v2.0_scaffold1053G53812 Striga asiatica HOM05D004272 ORTHO05D005020 1.7e-31 141.4 75 90.7
SGA_v2.0_scaffold322G48619 Striga asiatica HOM05D004272 ORTHO05D005020 1.7e-31 141.4 75 90.7
SGA_v2.0_scaffold386G50488 Striga asiatica HOM05D004272 ORTHO05D005020 3.9e-31 140.2 75 89.3
CDE12G0366 Ceratophyllum demersum HOM05D004272 ORTHO05D005020 1.3e-26 125.2 341 29.0
Zm00001eb138930 Zea mays HOM05D004272 ORTHO05D005020 3.3e-22 110.5 235 33.2
Haze_26549 Corylus avellana HOM05D004272 ORTHO05D005020 7.3e-22 109.4 411 26.5
CBR_g53619 Chara braunii HOM05D004272 ORTHO05D005020 2.8e-21 107.5 122 41.8
CBR_g53623 Chara braunii HOM05D004272 ORTHO05D005020 8.1e-21 105.9 114 39.5
SMO351G0156 Selaginella moellendorffii HOM05D004272 ORTHO05D005020 2.3e-20 104.4 153 38.6
Haze_26606 Corylus avellana HOM05D004272 ORTHO05D005020 2.6e-19 100.9 228 28.5
Cre09.g389949 Chlamydomonas reinhardtii HOM05D004272 ORTHO05D005020 2.9e-18 97.4 139 42.4
SMO115G0188 Selaginella moellendorffii HOM05D004272 ORTHO05D005020 4.9e-18 96.7 153 32.7
SMO166G0076 Selaginella moellendorffii HOM05D004272 ORTHO05D005020 8.4e-18 95.9 215 27.4
SMO119G0089 Selaginella moellendorffii HOM05D004272 ORTHO05D005020 7.1e-17 92.8 155 33.5
Glyma.20G173900 Glycine max HOM05D004272 ORTHO05D005020 1.9e-14 84.7 60 61.7
PRCOL_00003935 Prasinoderma coloniale HOM05D004272 ORTHO05D005020 1.9e-14 84.7 280 27.9
Psat6g014560 Pisum sativum HOM05D004272 ORTHO05D005020 2.8e-13 80.9 80 52.5
SEGI_21150 Sequoiadendron giganteum HOM05D004272 ORTHO05D005020 1.8e-12 78.2 77 51.9
Cfa026335 Carpinus fangiana HOM05D003314 ORTHO05D004164 3.4e-11 73.9 230 28.7
PSO170G3665 Papaver somniferum HOM05D004272 ORTHO05D005020 1.9e-09 68.2 48 64.6
Cfa022797 Carpinus fangiana HOM05D004272 ORTHO05D005020 7.1e-09 66.2 276 23.6


User provided reference genes

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