Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold149G36609 Striga asiatica HOM05D005137 ORTHO05D006478 1.2e-86 323.2 164 100.0
MSTRG.22441 Avicennia marina HOM05D005137 ORTHO05D006478 1.3e-77 293.1 164 87.8
Oeu021007.1 Olea europaea HOM05D005137 ORTHO05D006478 1.4e-74 283.1 164 85.4
Oeu039592.1 Olea europaea HOM05D005137 ORTHO05D006478 6.7e-74 280.8 164 84.8
Migut.N03340 Erythranthe guttata HOM05D005137 ORTHO05D006478 2.0e-73 279.3 164 82.9
SalBow6G2431 Salvia bowleyana HOM05D005137 ORTHO05D006478 1.3e-72 276.6 164 84.1
SalBow6G5561 Salvia bowleyana HOM05D005137 ORTHO05D006478 1.3e-72 276.6 164 84.1
CSS0031544 Camellia sinensis var. sinensis HOM05D005137 ORTHO05D006478 2.2e-69 265.8 164 78.7
CSS0044586 Camellia sinensis var. sinensis HOM05D005137 ORTHO05D006478 2.2e-69 265.8 164 78.7
Nn5g27795 Nelumbo nucifera HOM05D005137 ORTHO05D006478 1.9e-68 262.7 164 74.4
Peaxi162Scf00020g02234 Petunia axillaris HOM05D005137 ORTHO05D006478 1.2e-67 260.0 164 78.7
Dinv41687 Davidia involucrata HOM05D005137 ORTHO05D006478 3.6e-67 258.5 164 75.6
unitig_52.g17664 Utricularia gibba HOM05D005137 ORTHO05D006478 6.1e-67 257.7 164 78.0
Atru.chr13.1812 Acer truncatum HOM05D005137 ORTHO05D006478 8.0e-67 257.3 164 74.4
CSS0049152 Camellia sinensis var. sinensis HOM05D005137 ORTHO05D006478 1.0e-66 256.9 164 76.8
CANSAT25G3131 Cannabis sativa HOM05D005137 ORTHO05D006478 1.0e-66 256.9 164 76.2
Gohir.D05G253100 Gossypium hirsutum HOM05D005137 ORTHO05D006478 1.8e-66 256.1 164 74.4
Cc10_g11140 Coffea canephora HOM05D005137 ORTHO05D006478 2.3e-66 255.8 164 75.6
Gohir.A05G250700 Gossypium hirsutum HOM05D005137 ORTHO05D006478 3.0e-66 255.4 164 74.4
Gorai.009G263900 Gossypium raimondii HOM05D005137 ORTHO05D006478 5.2e-66 254.6 164 73.8
arahy.Tifrunner.gnm1.ann1.UQ6TGS Arachis hypogaea HOM05D005137 ORTHO05D006478 2.6e-65 252.3 164 74.4
TAR628G0708 Trochodendron aralioides HOM05D005137 ORTHO05D006478 2.6e-65 252.3 164 70.1
GSVIVG01023270001 Vitis vinifera HOM05D005137 ORTHO05D006478 2.6e-65 252.3 164 74.4
arahy.Tifrunner.gnm1.ann1.RF3N8D Arachis hypogaea HOM05D005137 ORTHO05D006478 4.4e-65 251.5 164 73.2
CANSAT64G0780 Cannabis sativa HOM05D005137 ORTHO05D006478 5.7e-65 251.1 164 74.4
PGSC0003DMG400033629 Solanum tuberosum HOM05D005137 ORTHO05D006478 9.7e-65 250.4 164 75.6
Manes.02G220500 Manihot esculenta HOM05D005137 ORTHO05D006478 2.2e-64 249.2 164 73.8
Sopen08g021770 Solanum pennellii HOM05D005137 ORTHO05D006478 2.2e-64 249.2 164 75.0
Thecc.08G201900 Theobroma cacao HOM05D005137 ORTHO05D006478 2.2e-64 249.2 164 71.3
CAN.G623.4 Capsicum annuum HOM05D005137 ORTHO05D006478 2.8e-64 248.8 164 75.6
Eucgr.F04136 Eucalyptus grandis HOM05D005137 ORTHO05D006478 2.8e-64 248.8 164 71.3
Solyc08g067830.3 Solanum lycopersicum HOM05D005137 ORTHO05D006478 4.8e-64 248.1 164 75.0
THA.LOC104806781 Tarenaya hassleriana HOM05D005137 ORTHO05D006478 8.2e-64 247.3 164 72.6
Psat5g109360 Pisum sativum HOM05D005137 ORTHO05D006478 1.4e-63 246.5 158 72.8
Hund27077 Selenicereus undatus HOM05D005137 ORTHO05D006478 1.4e-63 246.5 162 72.2
CiPaw.15G082700 Carya illinoinensis HOM05D005137 ORTHO05D006478 2.4e-63 245.7 164 72.6
Duzib177G1119 Durio zibethinus HOM05D005137 ORTHO05D006478 2.4e-63 245.7 164 71.3
Lj1g0006567 Lotus japonicus HOM05D005137 ORTHO05D006478 3.1e-63 245.4 164 73.2
Nitab4.5_0000125g0160 Nicotiana tabacum HOM05D005137 ORTHO05D006478 3.1e-63 245.4 164 74.4
THA.LOC104813096 Tarenaya hassleriana HOM05D005137 ORTHO05D006478 3.1e-63 245.4 164 71.3
Ca_16220_v3 Cicer arietinum L. HOM05D005137 ORTHO05D006478 4.1e-63 245.0 164 70.1
Cfa018205 Carpinus fangiana HOM05D005137 ORTHO05D006478 5.3e-63 244.6 164 72.6
PGR004G0411 Punica granatum HOM05D005137 ORTHO05D006478 5.3e-63 244.6 164 73.2
Cpa.g.sc66.58 Carica papaya HOM05D005137 ORTHO05D006478 7.0e-63 244.2 164 72.0
TWI34G1514 Tripterygium wilfordii HOM05D005137 ORTHO05D006478 9.1e-63 243.8 164 71.3
Duzib116G0364 Durio zibethinus HOM05D005137 ORTHO05D006478 1.2e-62 243.4 164 70.1
Sabra13G0097100 Salix brachista HOM05D005137 ORTHO05D006478 1.6e-62 243.0 163 71.2
Glyma.09G166500 Glycine max HOM05D005137 ORTHO05D006478 2.0e-62 242.7 164 70.7
Sp1g29570 Schrenkiella parvula HOM05D005137 ORTHO05D006478 2.0e-62 242.7 164 72.0
Lalb_Chr03g0035851 Lupinus albus HOM05D005137 ORTHO05D006478 4.5e-62 241.5 164 71.3
Hund16805 Selenicereus undatus HOM05D005137 ORTHO05D006478 4.5e-62 241.5 164 70.7
AT1G34350 Arabidopsis thaliana HOM05D005137 ORTHO05D006478 5.9e-62 241.1 164 72.0
PSO210G7193 Papaver somniferum HOM05D005137 ORTHO05D006478 5.9e-62 241.1 164 70.7
BcaB03g13677 Brassica carinata HOM05D005137 ORTHO05D006478 7.7e-62 240.7 164 71.3
Carub.0001s3248 Capsella rubella HOM05D005137 ORTHO05D006478 7.7e-62 240.7 164 72.0
TWI32G0414 Tripterygium wilfordii HOM05D005137 ORTHO05D006478 7.7e-62 240.7 164 71.3
RcHm_v2.0_Chr6g0272201 Rosa chinensis HOM05D005137 ORTHO05D006478 1.0e-61 240.4 164 71.3
Glyma.16G156600 Glycine max HOM05D005137 ORTHO05D006478 2.2e-61 239.2 164 69.5
AL1G48900 Arabidopsis lyrata HOM05D005137 ORTHO05D006478 2.9e-61 238.8 164 71.3
C06p11610 Brassica napus HOM05D005137 ORTHO05D006478 2.9e-61 238.8 164 70.7
Glyma.02G074600 Glycine max HOM05D005137 ORTHO05D006478 3.8e-61 238.4 164 68.9
Phvul.004G084500 Phaseolus vulgaris HOM05D005137 ORTHO05D006478 3.8e-61 238.4 164 69.5
Thhalv10008956m.g Eutrema salsugineum HOM05D005137 ORTHO05D006478 6.5e-61 237.7 164 69.5
PSO238G0018 Papaver somniferum HOM05D005137 ORTHO05D006478 6.5e-61 237.7 164 70.1
Sc01g0001710 Simmondsia chinensis HOM05D005137 ORTHO05D006478 8.5e-61 237.3 164 70.1
A08p08280 Brassica napus HOM05D005137 ORTHO05D006478 1.5e-60 236.5 164 69.5
CDE05G2425 Ceratophyllum demersum HOM05D005137 ORTHO05D006478 1.5e-60 236.5 164 67.1
AUR62023580 Chenopodium quinoa HOM05D005137 ORTHO05D006478 1.5e-60 236.5 156 73.7
Ciclev10002730m.g Citrus clementina HOM05D005137 ORTHO05D006478 1.5e-60 236.5 164 72.0
Medtr3g078663 Medicago truncatula HOM05D005137 ORTHO05D006478 1.9e-60 236.1 164 67.7
Potri.019G085500 Populus trichocarpa HOM05D005137 ORTHO05D006478 1.9e-60 236.1 163 68.7
Potri.013G114800 Populus trichocarpa HOM05D005137 ORTHO05D006478 3.2e-60 235.3 163 68.7
MD05G1040400 Malus domestica HOM05D005137 ORTHO05D006478 4.2e-60 235.0 164 70.1
BcaC05g27759 Brassica carinata HOM05D005137 ORTHO05D006478 5.5e-60 234.6 164 68.9
BcaC08g43783 Brassica carinata HOM05D005137 ORTHO05D006478 5.5e-60 234.6 164 68.9
C05p37550 Brassica napus HOM05D005137 ORTHO05D006478 5.5e-60 234.6 164 68.9
BolC6t36295H Brassica oleracea HOM05D005137 ORTHO05D006478 5.5e-60 234.6 164 68.9
MD10G1046500 Malus domestica HOM05D005137 ORTHO05D006478 5.5e-60 234.6 164 70.7
VMungo0464G1968 Vigna mungo HOM05D005137 ORTHO05D006478 5.5e-60 234.6 164 68.3
BcaB07g33131 Brassica carinata HOM05D005137 ORTHO05D006478 7.2e-60 234.2 164 68.3
CsaV3_2G035870 Cucumis sativus L. HOM05D005137 ORTHO05D006478 9.4e-60 233.8 164 67.1
Prupe.8G054100 Prunus persica HOM05D005137 ORTHO05D006478 9.4e-60 233.8 164 70.1
Lalb_Chr01g0009971 Lupinus albus HOM05D005137 ORTHO05D006478 1.6e-59 233.0 164 67.7
Aqoxy5G03157 Aquilegia oxysepala HOM05D005137 ORTHO05D006478 2.7e-59 232.3 162 68.5
HanXRQChr01g0027021 Helianthus annuus HOM05D005137 ORTHO05D006478 2.7e-59 232.3 164 65.9
Haze_17904 Corylus avellana HOM05D005137 ORTHO05D006478 3.6e-59 231.9 188 63.3
Sed0020054 Sechium edule HOM05D005137 ORTHO05D006478 4.7e-59 231.5 164 67.7
FvH4_2g12231 Fragaria vesca HOM05D005137 ORTHO05D006478 6.1e-59 231.1 164 67.1
Lsat_1_v5_gn_1_53501 Lactuca sativa HOM05D005137 ORTHO05D006478 6.1e-59 231.1 164 66.5
MELO3C024753.2 Cucumis melo HOM05D005137 ORTHO05D006478 1.0e-58 230.3 164 66.5
FAN20G1842 Fragaria x ananassa HOM05D005137 ORTHO05D006478 1.0e-58 230.3 164 67.1
ECA248G1561 Erigeron canadensis HOM05D005137 ORTHO05D006478 2.3e-58 229.2 164 65.2
EL10Ac1g00786 Beta vulgaris HOM05D005137 ORTHO05D006478 8.8e-58 227.3 164 64.0
FAN27G0578 Fragaria x ananassa HOM05D005137 ORTHO05D006478 2.0e-57 226.1 164 65.9
Aa31LG6G8420 Aethionema arabicum HOM05D005137 ORTHO05D006478 7.5e-57 224.2 173 63.6
BolC8t47866H Brassica oleracea HOM05D005137 ORTHO05D006478 8.3e-56 220.7 185 60.0
BraA08t32846Z Brassica rapa HOM05D005137 ORTHO05D006478 1.4e-55 219.9 193 58.5
BolC5t32496H Brassica oleracea HOM05D005137 ORTHO05D006478 2.4e-55 219.2 191 58.6
Medtr1g083990 Medicago truncatula HOM05D001444 ORTHO05D006478 3.1e-55 218.8 174 63.8
Zm00001eb174480 Zea mays HOM05D005137 ORTHO05D006478 4.1e-55 218.4 164 64.0
DCAR_006419 Daucus carota HOM05D005137 ORTHO05D006478 5.4e-55 218.0 164 63.4
ClCG02G007860 Citrullus lanatus HOM05D005137 ORTHO05D006478 7.0e-55 217.6 160 65.6
HPP92_025038 Vanilla planifolia HOM05D005137 ORTHO05D006478 1.7e-53 213.0 164 62.8
PSO063G4111 Papaver somniferum HOM05D005137 ORTHO05D006478 2.3e-53 212.6 171 63.7
Os08g0104100 Oryza sativa ssp. japonica HOM05D005137 ORTHO05D006478 2.8e-51 205.7 162 58.6
ATR0584G018 Amborella trichopoda HOM05D005137 ORTHO05D006478 4.7e-51 204.9 164 63.4
unitig_62.g23355 Utricularia gibba HOM05D005137 ORTHO05D006478 9.2e-47 190.7 176 59.7
CARHR033800 Cardamine hirsuta HOM05D005137 ORTHO05D006478 1.3e-45 186.8 133 68.4
Nitab4.5_0006579g0080 Nicotiana tabacum HOM05D005137 ORTHO05D006478 8.6e-45 184.1 164 59.1
Os05g0432500 Oryza sativa ssp. japonica HOM05D005137 ORTHO05D006478 2.5e-44 182.6 164 53.0
FAN24G3447 Fragaria x ananassa HOM05D004393 ORTHO05D004897 3.3e-44 182.2 132 65.9
SEGI_32859 Sequoiadendron giganteum HOM05D005137 ORTHO05D006478 3.3e-44 182.2 170 55.3
SEGI_32911 Sequoiadendron giganteum HOM05D005137 ORTHO05D006478 3.3e-44 182.2 170 55.3
AUR62004663 Chenopodium quinoa HOM05D005137 ORTHO05D006478 4.3e-44 181.8 165 60.0
COL.COLO4_35446 Corchorus olitorius HOM05D005137 ORTHO05D006478 1.5e-41 173.3 221 46.2
Glyma.16G216600 Glycine max HOM05D005137 ORTHO05D006478 3.9e-37 158.7 117 68.4
Pp3c12_6500 Physcomitrium patens HOM05D005137 ORTHO05D006478 2.5e-36 156.0 168 48.2
AagrBONN_evm.TU.Sc2ySwM_117.1441 Anthoceros agrestis HOM05D005137 ORTHO05D006478 2.1e-35 152.9 169 47.9
CAN.G21.12 Capsicum annuum HOM05D005137 ORTHO05D006478 1.1e-34 150.6 97 79.4
Actinidia32879 Actinidia chinensis HOM05D005137 ORTHO05D006478 1.2e-33 147.1 94 77.7
Mapoly0118s0004 Marchantia polymorpha HOM05D005137 ORTHO05D006478 3.7e-32 142.1 165 47.9
SGA_v2.0_scaffold386G50489 Striga asiatica HOM05D005137 ORTHO05D006478 5.4e-31 138.3 104 75.0
SMO115G0137 Selaginella moellendorffii HOM05D005137 ORTHO05D006478 2.1e-30 136.3 121 51.2
BraA09t38756Z Brassica rapa HOM05D005137 ORTHO05D006478 1.3e-29 133.7 96 66.7
QL02p034107 Quercus lobata HOM05D005137 ORTHO05D006478 1.3e-29 133.7 82 75.6
SMO304G0014 Selaginella moellendorffii HOM05D005137 ORTHO05D006478 1.7e-29 133.3 167 46.7
Lj7P297T42 Lonicera japonica HOM05D005137 ORTHO05D006478 3.0e-29 132.5 83 78.3
Peaxi162Scf00105g01425 Petunia axillaris HOM05D005137 ORTHO05D006478 3.0e-29 132.5 91 76.9
Rhsim06G0097400 Rhododendron simsii HOM05D005137 ORTHO05D006478 3.6e-27 125.6 82 74.4
QL02p034100 Quercus lobata HOM05D005137 ORTHO05D006478 4.7e-27 125.2 83 73.5
Cre02.g142150 Chlamydomonas reinhardtii HOM05D005137 ORTHO05D006478 1.2e-22 110.5 151 39.7
Dinv30978 Davidia involucrata HOM05D005137 ORTHO05D006478 3.0e-21 105.9 69 69.6
arahy.Tifrunner.gnm1.ann1.T3MISZ Arachis hypogaea HOM05D005137 ORTHO05D006478 3.9e-21 105.5 66 74.2
MCO05G717 Micromonas commoda HOM05D005137 ORTHO05D006478 2.0e-17 93.2 119 38.7
Zm00001eb289230 Zea mays HOM05D005137 ORTHO05D006478 5.8e-17 91.7 82 52.4
SGA_v2.0_scaffold1053G53813 Striga asiatica HOM05D005137 ORTHO05D006478 2.9e-16 89.4 77 66.2
BcaB04g17880 Brassica carinata HOM05D005137 ORTHO05D006478 3.8e-16 89.0 57 64.9
Lj7C297T10 Lonicera japonica HOM05D005137 ORTHO05D006478 1.2e-14 84.0 47 80.9
arahy.Tifrunner.gnm1.ann1.84LCSI Arachis hypogaea HOM05D005137 ORTHO05D013367 3.9e-13 79.0 84 51.2
arahy.Tifrunner.gnm1.ann1.A3G9LL Arachis hypogaea HOM05D005137 ORTHO05D006478 5.1e-13 78.6 48 79.2
vmacro12499 Vaccinium macrocarpon HOM05D005137 ORTHO05D006478 8.7e-13 77.8 46 71.7
arahy.Tifrunner.gnm1.ann1.T6GVNL Arachis hypogaea HOM05D005137 ORTHO05D006478 9.6e-12 74.3 68 60.3
Medtr2g069440 Medicago truncatula HOM05D003000 ORTHO05D003699 1.2e-09 67.4 44 70.5
TPR.G27590 Trifolium pratense HOM05D005137 ORTHO05D006478 1.2e-09 67.4 47 57.4
BraA09t38755Z Brassica rapa HOM05D005137 ORTHO05D006478 6.0e-06 55.1 32 78.1


User provided reference genes

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