Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold149G36578 Striga asiatica HOM05D042572 ORTHO05D000343 1.0e-219 766.5 410 100.0
SGA_v2.0_scaffold399G50795 Striga asiatica HOM05D042572 ORTHO05D400627 3.6e-60 236.5 179 70.9
SGA_v2.0_scaffold305G47999 Striga asiatica HOM05D000475 ORTHO05D000343 1.8e-51 207.6 251 58.2
SGA_v2.0_scaffold96G29030 Striga asiatica HOM05D000475 ORTHO05D000343 5.8e-50 202.6 269 57.6
MSTRG.11908 Avicennia marina HOM05D000475 ORTHO05D000343 6.2e-44 182.6 258 52.3
MSTRG.25692 Avicennia marina HOM05D000475 ORTHO05D000343 3.1e-43 180.3 278 48.6
SalBow1G8074 Salvia bowleyana HOM05D000475 ORTHO05D000343 1.3e-36 158.3 252 47.6
unitig_0.g2838 Utricularia gibba HOM05D000475 ORTHO05D000343 4.5e-34 149.8 244 45.1
Oeu063507.1 Olea europaea HOM05D000475 ORTHO05D000343 3.2e-32 143.7 275 45.5
Oeu058006.1 Olea europaea HOM05D000475 ORTHO05D000343 1.0e-30 138.7 275 40.4
Lsat_1_v5_gn_3_11361 Lactuca sativa HOM05D000475 ORTHO05D000343 1.3e-25 121.7 256 38.3
Lsat_1_v5_gn_6_84200 Lactuca sativa HOM05D000475 ORTHO05D000343 3.2e-24 117.1 254 37.4
ECA246G0466 Erigeron canadensis HOM05D000475 ORTHO05D000343 1.6e-23 114.8 260 37.3
ECA240G4762 Erigeron canadensis HOM05D000475 ORTHO05D000343 1.4e-22 111.7 260 42.3
PGSC0003DMG400012138 Solanum tuberosum HOM05D000475 ORTHO05D000343 1.8e-22 111.3 252 43.7
Solyc08g082610.4 Solanum lycopersicum HOM05D000475 ORTHO05D000343 2.3e-22 110.9 252 43.3
Hma1.2p1_0359F.1_g135090 Hydrangea macrophylla HOM05D000475 ORTHO05D000343 3.0e-22 110.5 253 46.2
Nitab4.5_0000798g0120 Nicotiana tabacum HOM05D000475 ORTHO05D000343 3.0e-22 110.5 260 38.1
Nitab4.5_0015866g0010 Nicotiana tabacum HOM05D000475 ORTHO05D000343 3.0e-22 110.5 260 38.5
Sopen08g030850 Solanum pennellii HOM05D000475 ORTHO05D000343 3.9e-22 110.2 248 42.7
Lj2A163T66 Lonicera japonica HOM05D000475 ORTHO05D000343 2.5e-21 107.5 260 39.6
HanXRQChr13g0415451 Helianthus annuus HOM05D000475 ORTHO05D000343 3.3e-21 107.1 261 41.0
HanXRQChr06g0166361 Helianthus annuus HOM05D000475 ORTHO05D000343 7.4e-21 105.9 243 37.9
HanXRQChr06g0166371 Helianthus annuus HOM05D000475 ORTHO05D000343 7.4e-21 105.9 243 37.9
HanXRQChr03g0083361 Helianthus annuus HOM05D000475 ORTHO05D000343 1.7e-20 104.8 249 41.0
Peaxi162Scf00102g01854 Petunia axillaris HOM05D000475 ORTHO05D000343 1.7e-20 104.8 260 41.9
CAN.G567.18 Capsicum annuum HOM05D000475 ORTHO05D000343 3.7e-20 103.6 257 37.0
Peaxi162Scf00074g00621 Petunia axillaris HOM05D000475 ORTHO05D000343 1.1e-19 102.1 244 38.5
DCAR_006521 Daucus carota HOM05D000475 ORTHO05D000343 5.3e-19 99.8 267 37.5
Dinv37510 Davidia involucrata HOM05D000475 ORTHO05D000343 1.5e-18 98.2 253 37.2
Aa31LG9G140 Aethionema arabicum HOM05D000475 ORTHO05D000343 2.0e-18 97.8 246 42.3
THA.LOC104817575 Tarenaya hassleriana HOM05D000475 ORTHO05D000343 2.6e-18 97.4 256 40.2
Gorai.008G256200 Gossypium raimondii HOM05D000475 ORTHO05D000343 3.4e-18 97.1 248 40.3
Dinv38818 Davidia involucrata HOM05D000475 ORTHO05D000343 5.9e-18 96.3 250 42.8
TWI81G0390 Tripterygium wilfordii HOM05D000475 ORTHO05D000343 5.9e-18 96.3 238 41.6
Medtr3g081090 Medicago truncatula HOM05D000475 ORTHO05D000343 1.0e-17 95.5 250 35.6
Gohir.A08G112200 Gossypium hirsutum HOM05D000475 ORTHO05D000343 1.3e-17 95.1 246 41.5
Duzib068G1055 Durio zibethinus HOM05D000475 ORTHO05D000343 1.7e-17 94.7 253 40.3
Gohir.A12G238000 Gossypium hirsutum HOM05D000475 ORTHO05D000343 1.7e-17 94.7 249 40.6
THA.LOC104809323 Tarenaya hassleriana HOM05D000475 ORTHO05D000343 1.7e-17 94.7 253 39.9
Gohir.D08G125100 Gossypium hirsutum HOM05D000475 ORTHO05D000343 2.2e-17 94.4 246 41.5
Gorai.004G131900 Gossypium raimondii HOM05D000475 ORTHO05D000343 2.2e-17 94.4 246 41.5
Thecc.03G301200 Theobroma cacao HOM05D000475 ORTHO05D000343 2.2e-17 94.4 243 40.7
Duzib205G1401 Durio zibethinus HOM05D000475 ORTHO05D000343 3.8e-17 93.6 250 40.8
Gohir.D12G239100 Gossypium hirsutum HOM05D000475 ORTHO05D000343 3.8e-17 93.6 249 40.2
arahy.Tifrunner.gnm1.ann1.79JQUH Arachis hypogaea HOM05D000475 ORTHO05D000343 5.0e-17 93.2 240 36.7
Ca_16305_v3 Cicer arietinum L. HOM05D000475 ORTHO05D000343 1.9e-16 91.3 244 39.3
CsaV3_4G006760 Cucumis sativus L. HOM05D000475 ORTHO05D000343 2.5e-16 90.9 270 39.6
Phvul.002G300300 Phaseolus vulgaris HOM05D000475 ORTHO05D000343 2.5e-16 90.9 253 36.8
Psat5g108280 Pisum sativum HOM05D000475 ORTHO05D000343 2.5e-16 90.9 252 35.7
CSS0003506 Camellia sinensis var. sinensis HOM05D000475 ORTHO05D000343 3.2e-16 90.5 269 39.8
PGSC0003DMG400005844 Solanum tuberosum HOM05D000475 ORTHO05D000343 4.2e-16 90.1 248 37.5
Sopen08g004250 Solanum pennellii HOM05D000475 ORTHO05D000343 1.2e-15 88.6 248 37.9
Lj8C206T3 Lonicera japonica HOM05D000475 ORTHO05D000343 2.1e-15 87.8 265 37.7
Manes.02G007800 Manihot esculenta HOM05D000475 ORTHO05D000343 2.1e-15 87.8 252 36.9
AL7G47110 Arabidopsis lyrata HOM05D000475 ORTHO05D000343 3.6e-15 87.0 251 41.0
AUR62010867 Chenopodium quinoa HOM05D000475 ORTHO05D000343 3.6e-15 87.0 245 37.6
Sc07g0010110 Simmondsia chinensis HOM05D000475 ORTHO05D000343 3.6e-15 87.0 238 40.8
COL.COLO4_10734 Corchorus olitorius HOM05D000475 ORTHO05D000343 4.7e-15 86.7 257 43.2
Solyc08g008370.3 Solanum lycopersicum HOM05D000475 ORTHO05D000343 4.7e-15 86.7 248 37.5
MELO3C016273.2 Cucumis melo HOM05D000475 ORTHO05D000343 6.1e-15 86.3 268 38.8
Duzib084G1000 Durio zibethinus HOM05D000475 ORTHO05D000343 1.4e-14 85.1 267 37.1
ClCG07G011450 Citrullus lanatus HOM05D000475 ORTHO05D000343 1.8e-14 84.7 267 39.0
Ciclev10021060m.g Citrus clementina HOM05D000475 ORTHO05D000343 1.8e-14 84.7 257 35.4
Medtr8g099685 Medicago truncatula HOM05D000475 ORTHO05D000343 1.8e-14 84.7 244 39.8
Hund14206 Selenicereus undatus HOM05D000475 ORTHO05D000343 1.8e-14 84.7 245 35.1
Cpa.g.sc79.7 Carica papaya HOM05D000475 ORTHO05D000343 2.3e-14 84.3 240 35.4
TPR.G3444 Trifolium pratense HOM05D000475 ORTHO05D000343 3.0e-14 84.0 257 38.1
Lalb_Chr05g0223991 Lupinus albus HOM05D000475 ORTHO05D000343 3.9e-14 83.6 269 40.1
Glyma.05G218500 Glycine max HOM05D000475 ORTHO05D000343 5.1e-14 83.2 257 39.7
AT5G42050 Arabidopsis thaliana HOM05D000475 ORTHO05D000343 6.7e-14 82.8 248 39.9
Carub.0007s3330 Capsella rubella HOM05D000475 ORTHO05D000343 6.7e-14 82.8 262 35.1
PSO384G2506 Papaver somniferum HOM05D000475 ORTHO05D000343 1.1e-13 82.0 250 39.2
Glyma.08G024600 Glycine max HOM05D000475 ORTHO05D000343 2.0e-13 81.3 247 41.3
Nn3g18969 Nelumbo nucifera HOM05D000475 ORTHO05D000343 2.0e-13 81.3 236 39.8
TAR636G1378 Trochodendron aralioides HOM05D000736 ORTHO05D000343 2.6e-13 80.9 235 38.3
VMungo0251G2340 Vigna mungo HOM05D000475 ORTHO05D000343 3.3e-13 80.5 255 38.8
CSS0018285 Camellia sinensis var. sinensis HOM05D000475 ORTHO05D000343 4.4e-13 80.1 282 40.1
MD06G1110600 Malus domestica HOM05D000475 ORTHO05D000343 4.4e-13 80.1 275 38.5
Sp7g00070 Schrenkiella parvula HOM05D000475 ORTHO05D000343 5.7e-13 79.7 262 37.8
TWI15G0479 Tripterygium wilfordii HOM05D000475 ORTHO05D000343 5.7e-13 79.7 280 39.3
RcHm_v2.0_Chr7g0194091 Rosa chinensis HOM05D000475 ORTHO05D000343 7.4e-13 79.3 290 37.6
BcaC02g08895 Brassica carinata HOM05D000475 ORTHO05D000343 9.7e-13 79.0 249 39.8
C04p49370 Brassica napus HOM05D000475 ORTHO05D000343 9.7e-13 79.0 249 39.8
CSS0045258 Camellia sinensis var. sinensis HOM05D000475 ORTHO05D000343 9.7e-13 79.0 283 39.9
Lj4g0011918 Lotus japonicus HOM05D000475 ORTHO05D000343 9.7e-13 79.0 257 38.1
Lj6g0018803 Lotus japonicus HOM05D000475 ORTHO05D000343 1.3e-12 78.6 249 32.5
Manes.01G052500 Manihot esculenta HOM05D000475 ORTHO05D000343 1.3e-12 78.6 268 34.0
EL10Ac5g12943 Beta vulgaris HOM05D000475 ORTHO05D000343 1.7e-12 78.2 260 37.7
A04p15150 Brassica napus HOM05D000475 ORTHO05D000343 2.2e-12 77.8 246 39.4
Prupe.5G123200 Prunus persica HOM05D000475 ORTHO05D000343 2.8e-12 77.4 278 36.7
TPR.G33569 Trifolium pratense HOM05D000475 ORTHO05D000343 2.8e-12 77.4 256 36.3
PSO135G0491 Papaver somniferum HOM05D000475 ORTHO05D000343 6.3e-12 76.3 251 34.3
FvH4_5g04970 Fragaria vesca HOM05D000475 ORTHO05D000343 8.2e-12 75.9 272 40.4
PGR042G3449 Punica granatum HOM05D000475 ORTHO05D000343 8.2e-12 75.9 256 34.0
BraA04t17156Z Brassica rapa HOM05D000475 ORTHO05D000343 1.1e-11 75.5 252 39.3
FAN13G1493 Fragaria x ananassa HOM05D000475 ORTHO05D000343 1.1e-11 75.5 272 40.4
CARHR212520 Cardamine hirsuta HOM05D000475 ORTHO05D000343 1.4e-11 75.1 268 32.8
FAN18G1876 Fragaria x ananassa HOM05D000475 ORTHO05D000343 1.4e-11 75.1 271 39.9
BolC4t26524H Brassica oleracea HOM05D000475 ORTHO05D000343 1.8e-11 74.7 249 39.0
FAN08G3679 Fragaria x ananassa HOM05D000475 ORTHO05D000343 1.8e-11 74.7 272 40.1
FAN18G0361 Fragaria x ananassa HOM05D000475 ORTHO05D000343 1.8e-11 74.7 271 39.5
MD14G1131300 Malus domestica HOM05D000475 ORTHO05D000343 1.8e-11 74.7 280 40.4
BcaB06g27687 Brassica carinata HOM05D000475 ORTHO05D000343 5.3e-11 73.2 256 39.1
CANSAT21G2288 Cannabis sativa HOM05D000475 ORTHO05D000343 5.3e-11 73.2 275 37.5
Eucgr.D01762 Eucalyptus grandis HOM05D000475 ORTHO05D000343 5.3e-11 73.2 291 36.1
FAN04G0549 Fragaria x ananassa HOM05D000475 ORTHO05D000343 7.0e-11 72.8 270 39.6
Glyma.13G003200 Glycine max HOM05D000475 ORTHO05D000343 9.1e-11 72.4 268 38.8
TAR629G1186 Trochodendron aralioides HOM05D000475 ORTHO05D000343 1.2e-10 72.0 241 37.3
PSO063G2481 Papaver somniferum HOM05D000475 ORTHO05D000343 2.6e-10 70.9 238 35.7
Psat7g024720 Pisum sativum HOM05D000475 ORTHO05D000343 2.6e-10 70.9 258 31.4
arahy.Tifrunner.gnm1.ann1.2Z587T Arachis hypogaea HOM05D000475 ORTHO05D000343 3.5e-10 70.5 122 47.5
arahy.Tifrunner.gnm1.ann1.9RX38M Arachis hypogaea HOM05D000475 ORTHO05D000343 3.5e-10 70.5 122 46.7
Lalb_Chr16g0390701 Lupinus albus HOM05D000475 ORTHO05D000343 3.5e-10 70.5 260 37.3
TWI60G0550 Tripterygium wilfordii HOM05D000475 ORTHO05D000343 3.5e-10 70.5 300 32.0
TAR374G0801 Trochodendron aralioides HOM05D000475 ORTHO05D000343 3.5e-10 70.5 236 36.9
PGR031G1926 Punica granatum HOM05D000475 ORTHO05D000343 4.5e-10 70.1 252 38.1
TAR375G0442 Trochodendron aralioides HOM05D000475 ORTHO05D000343 5.9e-10 69.7 234 37.6
PSO170G3482 Papaver somniferum HOM05D000475 ORTHO05D000343 7.7e-10 69.3 247 36.4
BcaB02g07866 Brassica carinata HOM05D000475 ORTHO05D000343 1.0e-09 68.9 242 38.0
Atru.chr9.1931 Acer truncatum HOM05D000475 ORTHO05D000343 1.3e-09 68.6 306 33.0
A07p21110 Brassica napus HOM05D000475 ORTHO05D000343 2.2e-09 67.8 243 37.9
vmacro13888 Vaccinium macrocarpon HOM05D000475 ORTHO05D000343 2.2e-09 67.8 327 29.4
VMungo0540G0925 Vigna mungo HOM05D000475 ORTHO05D000343 5.0e-09 66.6 258 36.0
Ah.12g052780 Amaranthus hybridus HOM05D006862 ORTHO05D008726 8.5e-09 65.9 256 40.2
C06p20470 Brassica napus HOM05D000475 ORTHO05D000343 8.5e-09 65.9 247 37.7
CAN.G792.35 Capsicum annuum HOM05D000475 ORTHO05D000343 8.5e-09 65.9 257 32.7
Rhsim07G0081400 Rhododendron simsii HOM05D000475 ORTHO05D000343 1.1e-08 65.5 123 45.5
Actinidia27310 Actinidia chinensis HOM05D000475 ORTHO05D000343 1.5e-08 65.1 267 38.2
Aqoxy5G04281 Aquilegia oxysepala HOM05D000475 ORTHO05D000343 1.9e-08 64.7 235 34.9
BcaC08g44580 Brassica carinata HOM05D000475 ORTHO05D000343 1.9e-08 64.7 247 37.7
BolC6t37228H Brassica oleracea HOM05D000475 ORTHO05D000343 1.9e-08 64.7 247 37.7
CiPaw.11G118600 Carya illinoinensis HOM05D000475 ORTHO05D000343 1.9e-08 64.7 106 54.7
Thhalv10027832m.g Eutrema salsugineum HOM05D000475 ORTHO05D000343 1.9e-08 64.7 250 36.4
Haze_09095 Corylus avellana HOM05D000475 ORTHO05D000343 2.5e-08 64.3 300 35.0
MBI06_g13420_MAGBIO Magnolia biondii HOM05D000475 ORTHO05D000343 2.5e-08 64.3 231 37.7
Nn1g00268 Nelumbo nucifera HOM05D000475 ORTHO05D000343 4.2e-08 63.5 241 42.7
QL02p029844 Quercus lobata HOM05D000475 ORTHO05D000343 4.2e-08 63.5 303 36.3
Migut.A00613 Erythranthe guttata HOM05D000475 ORTHO05D000343 1.2e-07 62.0 251 32.3
BraA07t29797Z Brassica rapa HOM05D000475 ORTHO05D000343 2.1e-07 61.2 246 36.6
Potri.001G088800 Populus trichocarpa HOM05D000475 ORTHO05D000343 2.7e-07 60.8 285 35.1
AUR62019869 Chenopodium quinoa HOM05D000475 ORTHO05D000343 4.7e-07 60.1 235 31.5
Ca_17463_v3 Cicer arietinum L. HOM05D000475 ORTHO05D000343 8.0e-07 59.3 124 39.5
Phvul.006G001100 Phaseolus vulgaris HOM05D000475 ORTHO05D000343 8.0e-07 59.3 253 36.4
Sed0027450 Sechium edule HOM05D000475 ORTHO05D000343 8.0e-07 59.3 270 35.9
Cfa011978 Carpinus fangiana HOM05D000475 ORTHO05D000343 2.3e-06 57.8 299 34.1
CiPaw.12G081100 Carya illinoinensis HOM05D000475 ORTHO05D000343 6.7e-06 56.2 104 51.9
Nitab4.5_0002231g0050 Nicotiana tabacum HOM05D000475 ORTHO05D000343 6.7e-06 56.2 237 32.1


User provided reference genes

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