Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold149G36512 Striga asiatica HOM05D007928 ORTHO05D009207 2.6e-61 238.4 111 100.0
Oeu050985.1 Olea europaea HOM05D007928 ORTHO05D009207 2.5e-24 115.5 83 65.1
Oeu054747.1 Olea europaea HOM05D007928 ORTHO05D009207 2.5e-24 115.5 97 57.7
Oeu030822.1 Olea europaea HOM05D007928 ORTHO05D009207 6.2e-23 110.9 83 61.4
SalBow3G1764 Salvia bowleyana HOM05D007928 ORTHO05D009207 4.0e-22 108.2 73 64.4
SalBow3G2359 Salvia bowleyana HOM05D007928 ORTHO05D009207 4.0e-22 108.2 73 64.4
Cc07_g07960 Coffea canephora HOM05D007928 ORTHO05D009207 5.8e-21 104.4 103 48.5
Migut.H00287 Erythranthe guttata HOM05D007928 ORTHO05D009207 1.0e-20 103.6 95 58.9
Nitab4.5_0007512g0040 Nicotiana tabacum HOM05D007928 ORTHO05D009207 6.5e-20 100.9 103 49.5
Nitab4.5_0000036g0450 Nicotiana tabacum HOM05D007928 ORTHO05D009207 3.2e-19 98.6 97 52.6
Nitab4.5_0003051g0030 Nicotiana tabacum HOM05D007928 ORTHO05D009207 3.2e-19 98.6 104 50.0
Actinidia16387 Actinidia chinensis HOM05D007928 ORTHO05D009207 5.5e-19 97.8 95 49.5
Migut.L00450 Erythranthe guttata HOM05D007928 ORTHO05D009207 4.6e-18 94.7 108 49.1
PGSC0003DMG400010390 Solanum tuberosum HOM05D007928 ORTHO05D009207 1.3e-17 93.2 100 48.0
Peaxi162Scf00943g00053 Petunia axillaris HOM05D007928 ORTHO05D009207 6.7e-17 90.9 106 48.1
Solyc02g063380.1 Solanum lycopersicum HOM05D007928 ORTHO05D009207 1.1e-16 90.1 94 48.9
Sopen02g014470 Solanum pennellii HOM05D007928 ORTHO05D009207 1.9e-16 89.4 96 47.9
Cfa006837 Carpinus fangiana HOM05D007928 ORTHO05D009207 3.3e-16 88.6 96 47.9
Peaxi162Scf00703g00018 Petunia axillaris HOM05D007928 ORTHO05D009207 7.4e-16 87.4 90 53.3
TAR628G0787 Trochodendron aralioides HOM05D007928 ORTHO05D009207 9.7e-16 87.0 71 54.9
RcHm_v2.0_Chr2g0110091 Rosa chinensis HOM05D007928 ORTHO05D009207 1.3e-15 86.7 104 49.0
Rhsim08G0088100 Rhododendron simsii HOM05D007928 ORTHO05D009207 1.6e-15 86.3 90 53.3
COL.COLO4_11686 Corchorus olitorius HOM05D007928 ORTHO05D009207 2.2e-15 85.9 97 48.5
Haze_03925 Corylus avellana HOM05D007928 ORTHO05D009207 2.2e-15 85.9 82 53.7
Glyma.01G020400 Glycine max HOM05D007928 ORTHO05D009207 4.8e-15 84.7 96 49.0
Dinv36974 Davidia involucrata HOM05D007928 ORTHO05D009207 6.3e-15 84.3 93 52.7
Gohir.A11G208300 Gossypium hirsutum HOM05D007928 ORTHO05D009207 1.8e-14 82.8 105 43.8
Manes.12G121900 Manihot esculenta HOM05D007928 ORTHO05D009207 2.4e-14 82.4 98 46.9
VMungo1215G2120 Vigna mungo HOM05D007928 ORTHO05D009207 2.4e-14 82.4 84 52.4
CiPaw.08G144700 Carya illinoinensis HOM05D007928 ORTHO05D009207 3.1e-14 82.0 90 45.6
Duzib147G1143 Durio zibethinus HOM05D007928 ORTHO05D009207 3.1e-14 82.0 97 46.4
Gorai.007G230900 Gossypium raimondii HOM05D007928 ORTHO05D009207 3.1e-14 82.0 100 46.0
Thecc.01G084700 Theobroma cacao HOM05D007928 ORTHO05D009207 4.1e-14 81.6 101 43.6
Gohir.D11G215100 Gossypium hirsutum HOM05D007928 ORTHO05D009207 6.9e-14 80.9 100 46.0
Glyma.09G201900 Glycine max HOM05D007928 ORTHO05D009207 1.2e-13 80.1 80 50.0
Lsat_1_v5_gn_4_157020 Lactuca sativa HOM05D007928 ORTHO05D009207 1.2e-13 80.1 89 48.3
Phvul.002G143700 Phaseolus vulgaris HOM05D007928 ORTHO05D009207 2.0e-13 79.3 102 47.1
Prupe.6G209000 Prunus persica HOM05D007928 ORTHO05D009207 2.6e-13 79.0 86 48.8
FAN26G1033 Fragaria x ananassa HOM05D007928 ORTHO05D009207 3.4e-13 78.6 102 46.1
Lsat_1_v5_gn_4_157500 Lactuca sativa HOM05D007928 ORTHO05D009207 5.9e-13 77.8 83 50.6
FvH4_1g19100 Fragaria vesca HOM05D007928 ORTHO05D009207 7.6e-13 77.4 103 44.7
FAN19G2807 Fragaria x ananassa HOM05D007928 ORTHO05D009207 7.6e-13 77.4 103 44.7
Nn5g29796 Nelumbo nucifera HOM05D007928 ORTHO05D009207 2.9e-12 75.5 79 49.4
Gorai.008G088800 Gossypium raimondii HOM05D007928 ORTHO05D009207 3.8e-12 75.1 82 53.7
GSVIVG01003863001 Vitis vinifera HOM05D007928 ORTHO05D009207 3.8e-12 75.1 95 43.2
Gohir.A12G082800 Gossypium hirsutum HOM05D007928 ORTHO05D009207 1.1e-11 73.6 81 51.9
PGSC0003DMG400030657 Solanum tuberosum HOM05D007928 ORTHO05D009207 1.1e-11 73.6 78 50.0
Lsat_1_v5_gn_3_81040 Lactuca sativa HOM05D007928 ORTHO05D009207 3.2e-11 72.0 91 45.1
Atru.chr3.1179 Acer truncatum HOM05D007928 ORTHO05D009207 4.2e-11 71.6 92 46.7
CsaV3_6G044800 Cucumis sativus L. HOM05D007928 ORTHO05D009207 4.2e-11 71.6 93 50.5
Sopen02g036180 Solanum pennellii HOM05D007928 ORTHO05D009207 4.2e-11 71.6 87 46.0
Lalb_Chr16g0381521 Lupinus albus HOM05D007928 ORTHO05D009207 9.4e-11 70.5 86 41.9
MBI16_g14338_MAGBIO Magnolia biondii HOM05D007928 ORTHO05D009207 9.4e-11 70.5 86 44.2
Medtr5g030990 Medicago truncatula HOM05D007928 ORTHO05D009207 9.4e-11 70.5 75 52.0
MBI16_g36545_MAGBIO Magnolia biondii HOM05D007928 ORTHO05D009207 1.2e-10 70.1 86 44.2
Sc03g0000550 Simmondsia chinensis HOM05D007928 ORTHO05D009207 1.2e-10 70.1 98 43.9
Nn1g05659 Nelumbo nucifera HOM05D007928 ORTHO05D009207 1.6e-10 69.7 72 47.2
FAN23G2934 Fragaria x ananassa HOM05D007928 ORTHO05D009207 3.6e-10 68.6 86 47.7
CiPaw.07G043300 Carya illinoinensis HOM05D007928 ORTHO05D009207 4.6e-10 68.2 84 46.4
Ciclev10026783m.g Citrus clementina HOM05D007928 ORTHO05D009207 4.6e-10 68.2 85 44.7
Ah.03g134340 Amaranthus hybridus HOM05D007928 ORTHO05D009207 7.9e-10 67.4 88 46.6
Gohir.A11G049900 Gossypium hirsutum HOM05D007928 ORTHO05D009207 7.9e-10 67.4 74 48.6
Lsat_1_v5_gn_4_157120 Lactuca sativa HOM05D011897 ORTHO05D009207 1.4e-09 66.6 81 43.2
Gorai.007G058100 Gossypium raimondii HOM05D007928 ORTHO05D009207 2.3e-09 65.9 83 47.0
Lj2g0015328 Lotus japonicus HOM05D007928 ORTHO05D009207 5.1e-09 64.7 79 49.4
TPR.G37018 Trifolium pratense HOM05D007928 ORTHO05D009207 5.1e-09 64.7 83 48.2
Cpa.g.sc129.13 Carica papaya HOM05D007928 ORTHO05D009207 6.7e-09 64.3 91 46.2
Lsat_1_v5_gn_4_157060 Lactuca sativa HOM05D011897 ORTHO05D009207 6.7e-09 64.3 80 46.2
ECA232G2728 Erigeron canadensis HOM05D011897 ORTHO05D009207 1.1e-08 63.5 82 46.3
Lsat_1_v5_gn_4_157100 Lactuca sativa HOM05D011897 ORTHO05D009207 1.5e-08 63.2 81 40.7
EL10Ac6g13311 Beta vulgaris HOM05D007928 ORTHO05D009207 2.5e-08 62.4 96 40.6
Lsat_1_v5_gn_4_156501 Lactuca sativa HOM05D011897 ORTHO05D009207 2.5e-08 62.4 80 43.8
ClCG01G018220 Citrullus lanatus HOM05D007928 ORTHO05D009207 3.3e-08 62.0 85 48.2
MELO3C007699.2 Cucumis melo HOM05D007928 ORTHO05D009207 3.3e-08 62.0 79 50.6
Lsat_1_v5_gn_4_156780 Lactuca sativa HOM05D011897 ORTHO05D009207 4.3e-08 61.6 82 42.7
Lsat_1_v5_gn_4_157180 Lactuca sativa HOM05D011897 ORTHO05D009207 4.3e-08 61.6 80 43.8
Lsat_1_v5_gn_4_157220 Lactuca sativa HOM05D011897 ORTHO05D009207 4.3e-08 61.6 80 43.8
Psat2g133800 Pisum sativum HOM05D007928 ORTHO05D009207 1.7e-07 59.7 72 48.6
arahy.Tifrunner.gnm1.ann1.WFP9WJ Arachis hypogaea HOM05D007928 ORTHO05D009207 2.8e-07 58.9 98 35.7
Lsat_1_v5_gn_4_157300 Lactuca sativa HOM05D011897 ORTHO05D009207 4.8e-07 58.2 80 42.5
unitig_88.g27719 Utricularia gibba HOM05D007928 ORTHO05D009207 8.2e-07 57.4 86 40.7
MBI16_g07262_MAGBIO Magnolia biondii HOM05D007928 ORTHO05D009207 1.4e-06 56.6 94 42.6
Lsat_1_v5_gn_4_156481 Lactuca sativa HOM05D011897 ORTHO05D009207 1.8e-06 56.2 80 41.2
Lalb_Chr09g0325821 Lupinus albus HOM05D007928 ORTHO05D009207 1.8e-06 56.2 84 39.3


User provided reference genes

Program Settings