Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold149G36490 Striga asiatica HOM05D004237 ORTHO05D005002 1.0e-188 663.3 354 100.0
Sopen02g035740 Solanum pennellii HOM05D004237 ORTHO05D005002 2.5e-102 376.3 403 52.1
SalBow3G4435 Salvia bowleyana HOM05D004237 ORTHO05D005002 1.4e-100 370.5 407 55.5
Solyc02g091090.4 Solanum lycopersicum HOM05D004237 ORTHO05D005002 2.2e-98 363.2 394 51.5
CSS0027261 Camellia sinensis var. sinensis HOM05D004237 ORTHO05D005002 8.5e-98 361.3 409 52.1
Cc07_g08200 Coffea canephora HOM05D004237 ORTHO05D005002 2.7e-96 356.3 403 51.6
Dinv14873 Davidia involucrata HOM05D004237 ORTHO05D005002 6.1e-96 355.1 412 50.5
Nitab4.5_0002248g0060 Nicotiana tabacum HOM05D004237 ORTHO05D005002 1.0e-95 354.4 409 51.6
Oeu047420.1 Olea europaea HOM05D004237 ORTHO05D005002 8.8e-95 351.3 358 56.4
Rhsim08G0085800 Rhododendron simsii HOM05D004237 ORTHO05D005002 1.3e-90 337.4 395 54.9
Sabra04G0058600 Salix brachista HOM05D004237 ORTHO05D005002 1.3e-90 337.4 418 50.0
CAN.G625.84 Capsicum annuum HOM05D004237 ORTHO05D005002 7.2e-89 331.6 357 54.1
Gohir.A05G279600 Gossypium hirsutum HOM05D004237 ORTHO05D005002 1.0e-87 327.8 409 51.1
Gorai.009G294600 Gossypium raimondii HOM05D004237 ORTHO05D005002 1.8e-87 327.0 410 51.2
Gohir.D05G281200 Gossypium hirsutum HOM05D004237 ORTHO05D005002 6.7e-87 325.1 411 48.7
MD09G1261100 Malus domestica HOM05D004237 ORTHO05D005002 1.1e-86 324.3 426 47.4
Actinidia17655 Actinidia chinensis HOM05D004237 ORTHO05D005002 2.6e-86 323.2 383 49.9
Prupe.3G158400 Prunus persica HOM05D004237 ORTHO05D005002 2.6e-86 323.2 422 47.6
EL10Ac2g04487 Beta vulgaris HOM05D004237 ORTHO05D005002 4.4e-86 322.4 399 47.6
Migut.H00265 Erythranthe guttata HOM05D004237 ORTHO05D005002 4.4e-86 322.4 418 50.7
Atru.chr4.1671 Acer truncatum HOM05D004237 ORTHO05D005002 1.7e-85 320.5 401 48.4
Duzib106G0201 Durio zibethinus HOM05D004237 ORTHO05D005002 1.4e-84 317.4 403 50.9
FAN06G1641 Fragaria x ananassa HOM05D004237 ORTHO05D005002 2.4e-84 316.6 419 47.0
FvH4_7g06071 Fragaria vesca HOM05D004237 ORTHO05D005002 7.0e-84 315.1 420 46.4
Thecc.10G175300 Theobroma cacao HOM05D004237 ORTHO05D005002 1.2e-83 314.3 406 50.2
Potri.004G088000 Populus trichocarpa HOM05D004237 ORTHO05D005002 1.5e-83 313.9 411 48.7
RcHm_v2.0_Chr7g0221661 Rosa chinensis HOM05D004237 ORTHO05D005002 2.0e-83 313.5 418 47.4
Manes.03G011500 Manihot esculenta HOM05D004237 ORTHO05D005002 3.4e-83 312.8 415 51.3
CiPaw.03G068200 Carya illinoinensis HOM05D004237 ORTHO05D005002 5.9e-83 312.0 407 45.7
Hund16204 Selenicereus undatus HOM05D004237 ORTHO05D005002 5.9e-83 312.0 411 47.7
ECA232G1788 Erigeron canadensis HOM05D004237 ORTHO05D005002 6.5e-82 308.5 380 48.9
DCAR_025876 Daucus carota HOM05D004237 ORTHO05D005002 1.1e-81 307.8 397 46.9
Sc11g0008610 Simmondsia chinensis HOM05D004237 ORTHO05D005002 1.1e-81 307.8 401 46.4
TAR633G2403 Trochodendron aralioides HOM05D004237 ORTHO05D005002 1.6e-80 303.9 400 45.5
HanXRQChr09g0262291 Helianthus annuus HOM05D004237 ORTHO05D005002 8.0e-80 301.6 381 47.5
Lsat_1_v5_gn_4_154701 Lactuca sativa HOM05D004237 ORTHO05D005002 1.8e-79 300.4 389 49.1
PGR004G2154 Punica granatum HOM05D004237 ORTHO05D005002 2.3e-79 300.1 425 48.5
Nn3g18884 Nelumbo nucifera HOM05D004237 ORTHO05D005002 3.0e-79 299.7 412 49.3
AUR62023243 Chenopodium quinoa HOM05D004237 ORTHO05D005002 2.0e-78 297.0 400 46.2
Cfa007846 Carpinus fangiana HOM05D004237 ORTHO05D005002 3.3e-78 296.2 409 45.0
CANSAT54G2538 Cannabis sativa HOM05D004237 ORTHO05D005002 4.4e-78 295.8 435 46.0
Haze_14220 Corylus avellana HOM05D004237 ORTHO05D005002 3.7e-77 292.7 402 48.0
Hma1.2p1_3512F.1_g336510 Hydrangea macrophylla HOM05D004237 ORTHO05D005002 3.7e-77 292.7 355 50.4
GSVIVG01030867001 Vitis vinifera HOM05D004237 ORTHO05D005002 4.8e-77 292.4 362 48.1
Cpa.g.sc118.40 Carica papaya HOM05D004237 ORTHO05D005002 5.9e-75 285.4 386 48.4
Aqoxy5G01640 Aquilegia oxysepala HOM05D004237 ORTHO05D005002 3.8e-74 282.7 421 43.7
arahy.Tifrunner.gnm1.ann1.MQJ11K Arachis hypogaea HOM05D004237 ORTHO05D005002 1.1e-73 281.2 407 48.2
ClCG05G010910 Citrullus lanatus HOM05D004237 ORTHO05D005002 1.1e-73 281.2 427 46.4
QL11p004173 Quercus lobata HOM05D004237 ORTHO05D005002 6.1e-72 275.4 407 42.5
Eucgr.F02819 Eucalyptus grandis HOM05D004237 ORTHO05D005002 8.0e-72 275.0 434 41.5
Glyma.02G247200 Glycine max HOM05D004237 ORTHO05D005002 1.4e-71 274.2 358 46.6
Phvul.008G233700 Phaseolus vulgaris HOM05D004237 ORTHO05D005002 1.4e-71 274.2 360 47.5
arahy.Tifrunner.gnm1.ann1.68W1N1 Arachis hypogaea HOM05D004237 ORTHO05D005002 1.2e-70 271.2 402 45.8
unitig_899.g14517 Utricularia gibba HOM05D004236 ORTHO05D004903 5.7e-70 268.9 406 43.3
Sed0014224 Sechium edule HOM05D004237 ORTHO05D005002 2.2e-69 266.9 404 44.1
CsaV3_3G021670 Cucumis sativus L. HOM05D004237 ORTHO05D005002 2.8e-69 266.5 417 42.9
MELO3C020294.2 Cucumis melo HOM05D004237 ORTHO05D005002 3.7e-69 266.2 416 44.0
Lalb_Chr10g0104521 Lupinus albus HOM05D004237 ORTHO05D005002 8.2e-69 265.0 384 47.7
LjContig00141g0018818 Lotus japonicus HOM05D004237 ORTHO05D005002 7.0e-68 261.9 385 43.6
SHI19441 Sapria himalayana HOM05D004237 ORTHO05D005002 7.7e-67 258.5 397 41.1
TPR.G3499 Trifolium pratense HOM05D004237 ORTHO05D005002 5.7e-62 242.3 357 42.9
Ca_05866_v3 Cicer arietinum L. HOM05D004237 ORTHO05D005002 2.8e-61 240.0 386 43.3
Ca_29976_v3 Cicer arietinum L. HOM05D004237 ORTHO05D005002 2.8e-61 240.0 386 43.3
Medtr5g079680 Medicago truncatula HOM05D004237 ORTHO05D005002 3.7e-61 239.6 379 44.1
Psat2g041040 Pisum sativum HOM05D004237 ORTHO05D005002 2.4e-60 236.9 402 40.8
Peaxi162Scf00003g00001 Petunia axillaris HOM05D004237 ORTHO05D005002 2.2e-53 213.8 327 41.3
Nitab4.5_0004399g0090 Nicotiana tabacum HOM05D004237 ORTHO05D005002 7.0e-52 208.8 326 44.2
CDE02G0048 Ceratophyllum demersum HOM05D004237 ORTHO05D005002 1.3e-50 204.5 243 49.4
CDE09G1075 Ceratophyllum demersum HOM05D004237 ORTHO05D005002 6.1e-48 195.7 406 35.7
MBI08_g18909_MAGBIO Magnolia biondii HOM05D004237 ORTHO05D005002 9.8e-46 188.3 295 45.1
ATR0743G026 Amborella trichopoda HOM05D004237 ORTHO05D005002 7.3e-41 172.2 476 33.8
Cpa.g.sc83.32 Carica papaya HOM05D004237 ORTHO05D005002 8.0e-40 168.7 273 39.9
SEGI_20207 Sequoiadendron giganteum HOM05D004237 ORTHO05D005002 8.0e-40 168.7 193 46.1
SEGI_05374 Sequoiadendron giganteum HOM05D004237 ORTHO05D005002 2.3e-39 167.2 436 34.6
GSVIVG01021000001 Vitis vinifera HOM05D004237 ORTHO05D005002 2.3e-39 167.2 359 35.7
Glyma.05G153300 Glycine max HOM05D004237 ORTHO05D005002 5.2e-39 166.0 130 56.9
Psat7g073000 Pisum sativum HOM05D004237 ORTHO05D005002 1.2e-38 164.9 121 58.7
ATR0561G250 Amborella trichopoda HOM05D004237 ORTHO05D005002 3.4e-38 163.3 138 54.3
TPR.G11799 Trifolium pratense HOM05D004237 ORTHO05D005002 7.5e-38 162.2 147 52.4
Peaxi162Scf00047g00110 Petunia axillaris HOM05D004237 ORTHO05D005002 1.3e-37 161.4 118 60.2
Nitab4.5_0007828g0040 Nicotiana tabacum HOM05D004237 ORTHO05D005002 2.9e-37 160.2 120 58.3
TAR636G2161 Trochodendron aralioides HOM05D004237 ORTHO05D005002 2.9e-37 160.2 198 44.9
MBI11_g07416_MAGBIO Magnolia biondii HOM05D004237 ORTHO05D005002 3.7e-37 159.8 244 41.8
AUR62023195 Chenopodium quinoa HOM05D004237 ORTHO05D005002 6.4e-37 159.1 301 40.2
Lj4g0001711 Lotus japonicus HOM05D004237 ORTHO05D005002 6.4e-37 159.1 436 32.3
Solyc09g092210.4 Solanum lycopersicum HOM05D004237 ORTHO05D005002 8.3e-37 158.7 141 52.5
Sopen09g035130 Solanum pennellii HOM05D004237 ORTHO05D005002 8.3e-37 158.7 141 52.5
Atru.chr4.1600 Acer truncatum HOM05D004237 ORTHO05D005002 1.1e-36 158.3 268 39.9
CiPaw.01G118000 Carya illinoinensis HOM05D004237 ORTHO05D005002 1.1e-36 158.3 257 40.1
Medtr8g085190 Medicago truncatula HOM05D004237 ORTHO05D005002 3.2e-36 156.8 283 38.5
Phvul.003G050200 Phaseolus vulgaris HOM05D004237 ORTHO05D005002 5.4e-36 156.0 273 38.8
vmacro15560 Vaccinium macrocarpon HOM05D004237 ORTHO05D005002 9.2e-36 155.2 140 53.6
Ca_17976_v3 Cicer arietinum L. HOM05D004237 ORTHO05D005002 1.2e-35 154.8 277 37.9
CSS0022501 Camellia sinensis var. sinensis HOM05D004237 ORTHO05D005002 1.6e-35 154.5 137 52.6
SGA_v2.0_scaffold31G12582 Striga asiatica HOM05D004237 ORTHO05D005002 1.6e-35 154.5 115 56.5
Ciclev10004964m.g Citrus clementina HOM05D004237 ORTHO05D005002 2.7e-35 153.7 265 38.5
Rhsim02G0061200 Rhododendron simsii HOM05D004237 ORTHO05D005002 2.7e-35 153.7 159 49.7
RhsimUnG0035800 Rhododendron simsii HOM05D004237 ORTHO05D005002 2.7e-35 153.7 159 49.7
unitig_45.g31537 Utricularia gibba HOM05D004237 ORTHO05D005002 2.7e-35 153.7 122 54.1
unitig_578.g16513 Utricularia gibba HOM05D004237 ORTHO05D005002 2.7e-35 153.7 122 54.1
CAN.G1565.17 Capsicum annuum HOM05D004237 ORTHO05D005002 3.5e-35 153.3 151 49.7
Haze_11643 Corylus avellana HOM05D004237 ORTHO05D005002 3.5e-35 153.3 260 39.2
Lj2P435T33 Lonicera japonica HOM05D004237 ORTHO05D005002 3.5e-35 153.3 276 39.1
Prupe.1G163000 Prunus persica HOM05D004237 ORTHO05D005002 3.5e-35 153.3 207 43.5
Potri.001G318600 Populus trichocarpa HOM05D004237 ORTHO05D005002 6.0e-35 152.5 281 37.7
Cfa014954 Carpinus fangiana HOM05D004237 ORTHO05D005002 7.8e-35 152.1 261 39.5
CBR_g29388 Chara braunii HOM05D004237 ORTHO05D005002 1.0e-34 151.8 161 46.0
Sabra16G0201600 Salix brachista HOM05D004237 ORTHO05D005002 1.7e-34 151.0 448 32.1
DCAR_030819 Daucus carota HOM05D004237 ORTHO05D005002 3.9e-34 149.8 266 38.0
MELO3C020354.2 Cucumis melo HOM05D004237 ORTHO05D005002 5.1e-34 149.4 267 34.8
Sc13g0000310 Simmondsia chinensis HOM05D004237 ORTHO05D005002 5.1e-34 149.4 297 38.7
PGSC0003DMG400026424 Solanum tuberosum HOM05D004237 ORTHO05D005002 5.1e-34 149.4 259 37.5
arahy.Tifrunner.gnm1.ann1.BLV0FA Arachis hypogaea HOM05D004237 ORTHO05D005002 6.6e-34 149.1 435 31.5
arahy.Tifrunner.gnm1.ann1.T9JHLZ Arachis hypogaea HOM05D004237 ORTHO05D005002 6.6e-34 149.1 435 31.5
Dinv27207 Davidia involucrata HOM05D004237 ORTHO05D005002 6.6e-34 149.1 418 33.3
Eucgr.H02692 Eucalyptus grandis HOM05D004237 ORTHO05D005002 6.6e-34 149.1 220 40.5
HanXRQChr15g0484241 Helianthus annuus HOM05D004237 ORTHO05D005002 8.6e-34 148.7 365 35.6
Oeu063463.1 Olea europaea HOM05D004237 ORTHO05D005002 1.5e-33 147.9 420 32.4
CsaV3_2G011170 Cucumis sativus L. HOM05D004237 ORTHO05D005002 3.3e-33 146.7 267 34.1
MD04G1016300 Malus domestica HOM05D004237 ORTHO05D005002 3.3e-33 146.7 223 38.1
VMungo0251G2499 Vigna mungo HOM05D004237 ORTHO05D005002 3.3e-33 146.7 426 33.6
Gohir.A10G128300 Gossypium hirsutum HOM05D004237 ORTHO05D005002 4.3e-33 146.4 272 36.8
Oeu025033.1 Olea europaea HOM05D004237 ORTHO05D005002 4.3e-33 146.4 256 38.7
Lalb_Chr07g0186771 Lupinus albus HOM05D004237 ORTHO05D005002 9.5e-33 145.2 419 33.9
Duzib212G0922 Durio zibethinus HOM05D004237 ORTHO05D005002 1.6e-32 144.4 271 36.2
Sabra17G0051800 Salix brachista HOM05D004237 ORTHO05D005002 2.1e-32 144.1 277 36.5
Aqoxy2G03968 Aquilegia oxysepala HOM05D004237 ORTHO05D005002 3.6e-32 143.3 271 38.4
Mapoly0008s0013 Marchantia polymorpha HOM05D004237 ORTHO05D005002 4.7e-32 142.9 417 32.9
Potri.017G058200 Populus trichocarpa HOM05D004237 ORTHO05D005002 4.7e-32 142.9 286 35.7
Dinv38185 Davidia involucrata HOM05D004237 ORTHO05D005002 6.2e-32 142.5 409 34.2
Thecc.04G196500 Theobroma cacao HOM05D004237 ORTHO05D005002 6.2e-32 142.5 463 30.7
RcHm_v2.0_Chr1g0334211 Rosa chinensis HOM05D004237 ORTHO05D005002 8.1e-32 142.1 272 34.9
Manes.15G056100 Manihot esculenta HOM05D004237 ORTHO05D005002 1.4e-31 141.4 304 36.5
QL06p026437 Quercus lobata HOM05D004237 ORTHO05D005002 1.8e-31 141.0 102 59.8
Manes.03G145100 Manihot esculenta HOM05D004237 ORTHO05D005002 2.3e-31 140.6 424 32.3
FAN12G1632 Fragaria x ananassa HOM05D004237 ORTHO05D005002 3.1e-31 140.2 255 38.4
HPP92_024243 Vanilla planifolia HOM05D004237 ORTHO05D005002 3.1e-31 140.2 120 54.2
MD13G1282300 Malus domestica HOM05D004237 ORTHO05D005002 5.2e-31 139.4 257 37.7
Actinidia11451 Actinidia chinensis HOM05D004237 ORTHO05D005002 8.9e-31 138.7 416 33.7
CANSAT78G0306 Cannabis sativa HOM05D004237 ORTHO05D005002 8.9e-31 138.7 308 35.7
FvH4_4g13400 Fragaria vesca HOM05D004237 ORTHO05D005002 8.9e-31 138.7 255 38.0
Lsat_1_v5_gn_2_45661 Lactuca sativa HOM05D004237 ORTHO05D005002 1.2e-30 138.3 368 34.5
MSTRG.21980 Avicennia marina HOM05D004237 ORTHO05D005002 1.5e-30 137.9 269 35.7
FAN07G1461 Fragaria x ananassa HOM05D004237 ORTHO05D005002 2.6e-30 137.1 255 37.6
Hma1.2p1_2958F.1_g330800 Hydrangea macrophylla HOM05D004237 ORTHO05D005002 2.6e-30 137.1 430 30.7
RcHm_v2.0_Chr4g0413771 Rosa chinensis HOM05D004237 ORTHO05D005002 1.3e-29 134.8 265 36.2
CDE05G0646 Ceratophyllum demersum HOM05D004237 ORTHO05D005002 5.4e-28 129.4 289 34.9
Actinidia28992 Actinidia chinensis HOM05D004237 ORTHO05D005002 1.2e-27 128.3 416 33.2
Migut.N00416 Erythranthe guttata HOM05D004237 ORTHO05D005002 1.2e-27 128.3 118 52.5
ECA238G4613 Erigeron canadensis HOM05D004237 ORTHO05D005002 1.0e-26 125.2 376 31.1
Gohir.D10G137600 Gossypium hirsutum HOM05D004237 ORTHO05D005002 3.0e-26 123.6 253 36.4
COL.COLO4_20213 Corchorus olitorius HOM05D004237 ORTHO05D005002 3.9e-26 123.2 195 38.5
AUR62020847 Chenopodium quinoa HOM05D004237 ORTHO05D005002 1.1e-25 121.7 235 37.0
Gorai.011G152800 Gossypium raimondii HOM05D004237 ORTHO05D005002 1.5e-25 121.3 253 36.0
RcHm_v2.0_Chr1g0333491 Rosa chinensis HOM05D003866 ORTHO05D004508 3.3e-25 120.2 96 58.3
Glyma.14G069000 Glycine max HOM05D004237 ORTHO05D005002 4.3e-25 119.8 287 36.9
Sed0001983 Sechium edule HOM05D004237 ORTHO05D005002 5.2e-23 112.8 248 32.7
RcHm_v2.0_Chr1g0333501 Rosa chinensis HOM05D004237 ORTHO05D005002 3.4e-14 83.6 176 36.9
PSO017G6634 Papaver somniferum HOM05D004237 ORTHO05D005002 9.9e-14 82.0 252 31.3
Peaxi162Scf00013g03225 Petunia axillaris HOM05D004237 ORTHO05D005002 9.6e-09 65.5 53 60.4


User provided reference genes

Program Settings