Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold148G36448 Striga asiatica HOM05D003991 ORTHO05D004883 0.0e+00 1562.4 817 100.0
SalBow1G2342 Salvia bowleyana HOM05D003991 ORTHO05D004883 0.0e+00 1242.6 779 84.1
MSTRG.2973 Avicennia marina HOM05D003991 ORTHO05D004883 0.0e+00 1209.9 779 81.8
Migut.O00382 Erythranthe guttata HOM05D003991 ORTHO05D004883 0.0e+00 1192.2 779 80.5
Lj4A124G55 Lonicera japonica HOM05D003991 ORTHO05D004883 0.0e+00 1178.3 790 77.0
Hma1.2p1_1837F.1_g304750 Hydrangea macrophylla HOM05D003991 ORTHO05D004883 0.0e+00 1140.2 809 73.5
CANSAT64G1645 Cannabis sativa HOM05D003991 ORTHO05D004883 0.0e+00 1124.0 801 72.8
CSS0001564 Camellia sinensis var. sinensis HOM05D003991 ORTHO05D004883 0.0e+00 1117.4 802 73.6
Ciclev10011098m.g Citrus clementina HOM05D003991 ORTHO05D004883 0.0e+00 1117.4 795 72.3
TWI32G1311 Tripterygium wilfordii HOM05D003991 ORTHO05D004883 0.0e+00 1114.4 791 73.5
Potri.017G100300 Populus trichocarpa HOM05D003991 ORTHO05D004883 0.0e+00 1114.0 800 72.8
Manes.02G059600 Manihot esculenta HOM05D003991 ORTHO05D004883 0.0e+00 1109.7 793 72.8
Nitab4.5_0000154g0150 Nicotiana tabacum HOM05D003991 ORTHO05D004883 0.0e+00 1107.8 781 73.4
DCAR_011017 Daucus carota HOM05D003991 ORTHO05D004883 0.0e+00 1106.3 791 72.4
Manes.01G103600 Manihot esculenta HOM05D003991 ORTHO05D004883 0.0e+00 1106.3 795 72.1
MD17G1065900 Malus domestica HOM05D003991 ORTHO05D004883 0.0e+00 1103.6 797 72.8
Prupe.3G248800 Prunus persica HOM05D003991 ORTHO05D004883 0.0e+00 1102.4 796 72.2
vmacro18126 Vaccinium macrocarpon HOM05D003991 ORTHO05D004883 0.0e+00 1102.4 838 69.1
Cfa007697 Carpinus fangiana HOM05D003991 ORTHO05D004883 0.0e+00 1100.9 792 72.0
TWI34G0665 Tripterygium wilfordii HOM05D003991 ORTHO05D004883 0.0e+00 1099.7 788 72.8
Duzib138G0045 Durio zibethinus HOM05D003991 ORTHO05D004883 0.0e+00 1098.6 815 71.2
Peaxi162Scf01002g00121 Petunia axillaris HOM05D003991 ORTHO05D004883 0.0e+00 1098.2 783 72.9
Cc07_g04500 Coffea canephora HOM05D003991 ORTHO05D004883 0.0e+00 1097.4 812 72.5
TAR622G0714 Trochodendron aralioides HOM05D003991 ORTHO05D004883 0.0e+00 1095.1 801 71.5
Lsat_1_v5_gn_3_96860 Lactuca sativa HOM05D003991 ORTHO05D004883 0.0e+00 1093.6 800 71.6
unitig_748.g8415 Utricularia gibba HOM05D003991 ORTHO05D004883 0.0e+00 1092.4 779 74.2
COL.COLO4_10252 Corchorus olitorius HOM05D003991 ORTHO05D004883 0.0e+00 1092.0 811 70.5
Potri.004G114600 Populus trichocarpa HOM05D003991 ORTHO05D004883 0.0e+00 1092.0 794 71.8
Sopen03g010790 Solanum pennellii HOM05D003991 ORTHO05D004883 0.0e+00 1092.0 794 71.3
CAN.G427.3 Capsicum annuum HOM05D003991 ORTHO05D004883 0.0e+00 1090.9 795 71.4
Eucgr.I02064 Eucalyptus grandis HOM05D003991 ORTHO05D004883 0.0e+00 1089.3 788 71.3
CiPaw.03G082800 Carya illinoinensis HOM05D003991 ORTHO05D004883 0.0e+00 1088.9 777 73.6
Atru.chr8.642 Acer truncatum HOM05D003991 ORTHO05D004883 0.0e+00 1086.2 794 71.3
HanXRQChr02g0043871 Helianthus annuus HOM05D003991 ORTHO05D004883 0.0e+00 1085.9 789 71.5
Ca_06908_v3 Cicer arietinum L. HOM05D003991 ORTHO05D004883 0.0e+00 1084.7 777 72.5
TPR.G23393 Trifolium pratense HOM05D003991 ORTHO05D004883 0.0e+00 1083.9 779 71.4
Gorai.001G207000 Gossypium raimondii HOM05D003991 ORTHO05D004883 0.0e+00 1083.2 807 70.9
MD09G1074500 Malus domestica HOM05D003991 ORTHO05D004883 0.0e+00 1082.4 799 71.1
MELO3C026296.2 Cucumis melo HOM05D003991 ORTHO05D004883 0.0e+00 1075.8 799 70.3
RcHm_v2.0_Chr2g0164851 Rosa chinensis HOM05D003991 ORTHO05D004883 0.0e+00 1075.5 797 71.3
Lj1g0022443 Lotus japonicus HOM05D003991 ORTHO05D004883 5.6e-312 1074.7 777 72.1
Hund13674 Selenicereus undatus HOM05D003991 ORTHO05D004883 5.6e-312 1073.5 778 71.2
Solyc03g046590.3 Solanum lycopersicum HOM05D003991 ORTHO05D004883 1.1e-311 1072.8 794 70.9
Duzib133G0226 Durio zibethinus HOM05D003991 ORTHO05D004883 1.7e-311 1072.4 808 69.9
CsaV3_4G010070 Cucumis sativus L. HOM05D003991 ORTHO05D004883 2.8e-311 1071.6 798 69.9
Haze_14380 Corylus avellana HOM05D003991 ORTHO05D004883 8.4e-311 1070.1 864 65.7
Rhsim08G0077400 Rhododendron simsii HOM05D003991 ORTHO05D004883 1.9e-310 1068.9 818 69.7
Cpa.g.sc541.1 Carica papaya HOM05D003991 ORTHO05D004883 5.5e-310 1067.4 757 73.6
FAN05G5440 Fragaria x ananassa HOM05D003991 ORTHO05D004883 7.2e-310 1067.0 805 70.6
FvH4_6g46350 Fragaria vesca HOM05D003991 ORTHO05D004883 1.6e-309 1065.8 792 71.2
Glyma.18G274100 Glycine max HOM05D003991 ORTHO05D004883 2.1e-309 1065.4 791 71.0
FAN09G2010 Fragaria x ananassa HOM05D003991 ORTHO05D004883 2.7e-309 1065.1 792 71.1
Psat3g203280 Pisum sativum HOM05D003991 ORTHO05D004883 3.6e-309 1064.7 780 70.3
Lalb_Chr10g0092711 Lupinus albus HOM05D003991 ORTHO05D004883 8.0e-309 1063.5 793 71.0
VMungo1383G3466 Vigna mungo HOM05D003991 ORTHO05D004883 1.8e-308 1062.4 790 70.6
Glyma.08G251400 Glycine max HOM05D003991 ORTHO05D004883 1.2e-307 1059.7 791 70.8
Phvul.008G026400 Phaseolus vulgaris HOM05D003991 ORTHO05D004883 4.4e-307 1057.7 790 70.0
Nn4g23516 Nelumbo nucifera HOM05D003991 ORTHO05D004883 7.5e-307 1057.0 803 69.4
PGR004G0075 Punica granatum HOM05D003991 ORTHO05D004883 1.7e-306 1055.8 787 69.4
FAN14G3680 Fragaria x ananassa HOM05D003991 ORTHO05D004883 8.2e-306 1053.5 806 69.7
Sed0026923 Sechium edule HOM05D003991 ORTHO05D004883 1.1e-305 1053.1 796 68.7
Oeu007082.1 Olea europaea HOM05D003991 ORTHO05D004883 3.1e-305 1051.6 826 69.1
Medtr7g016900 Medicago truncatula HOM05D003991 ORTHO05D004883 8.5e-303 1043.5 771 70.6
FAN02G3988 Fragaria x ananassa HOM05D003991 ORTHO05D004883 1.5e-302 1042.7 810 69.0
EL10Ac2g04440 Beta vulgaris HOM05D003991 ORTHO05D004883 7.2e-302 1040.4 786 68.7
AL7G51550 Arabidopsis lyrata HOM05D003991 ORTHO05D004883 8.0e-301 1036.9 794 67.9
ClCG07G016050 Citrullus lanatus HOM05D003991 ORTHO05D004883 2.3e-300 1035.4 842 65.8
AT5G38880 Arabidopsis thaliana HOM05D003991 ORTHO05D004883 4.0e-300 1034.6 794 67.9
THA.LOC104822745 Tarenaya hassleriana HOM05D003991 ORTHO05D004883 2.6e-299 1031.9 800 68.5
arahy.Tifrunner.gnm1.ann1.YA99EJ Arachis hypogaea HOM05D003991 ORTHO05D004883 7.5e-299 1030.4 787 68.6
ECA246G2054 Erigeron canadensis HOM05D003991 ORTHO05D004883 3.7e-298 1028.1 788 68.5
Carub.0007s3697 Capsella rubella HOM05D003991 ORTHO05D004883 1.8e-297 1025.8 793 67.3
Aa31LG2G3750 Aethionema arabicum HOM05D003991 ORTHO05D004883 2.4e-297 1025.4 787 67.3
PSO782G2666 Papaver somniferum HOM05D003991 ORTHO05D004883 2.4e-297 1025.4 802 67.0
TAR374G0063 Trochodendron aralioides HOM05D003991 ORTHO05D004883 4.1e-297 1024.6 762 70.9
GSVIVG01036544001 Vitis vinifera HOM05D003991 ORTHO05D004883 7.0e-297 1023.8 779 70.6
AUR62009479 Chenopodium quinoa HOM05D003991 ORTHO05D004883 1.6e-296 1022.7 778 68.1
PSO063G1675 Papaver somniferum HOM05D003991 ORTHO05D004883 3.5e-296 1021.5 803 66.5
arahy.Tifrunner.gnm1.ann1.T6I3L8 Arachis hypogaea HOM05D003991 ORTHO05D004883 1.1e-294 1016.5 799 67.6
Sp2g18130 Schrenkiella parvula HOM05D003991 ORTHO05D004883 2.5e-294 1015.4 788 67.4
MBI17_g07944_MAGBIO Magnolia biondii HOM05D003991 ORTHO05D004883 3.3e-294 1015.0 800 67.2
Thhalv10003675m.g Eutrema salsugineum HOM05D003991 ORTHO05D004883 9.5e-294 1013.4 787 67.5
Thhalv10027646m.g Eutrema salsugineum HOM05D003991 ORTHO05D004883 4.7e-293 1011.1 790 66.7
Sabra17G0086400 Salix brachista HOM05D003991 ORTHO05D004883 6.1e-293 1010.7 893 61.9
Nitab4.5_0001434g0090 Nicotiana tabacum HOM05D003991 ORTHO05D004883 1.4e-289 999.6 788 68.5
A06p39740 Brassica napus HOM05D003991 ORTHO05D004883 7.0e-289 997.3 781 66.2
BraA06t26889Z Brassica rapa HOM05D003991 ORTHO05D004883 7.0e-289 997.3 781 66.2
AUR62023158 Chenopodium quinoa HOM05D003991 ORTHO05D004883 4.5e-288 994.6 769 67.1
BcaC06g33715 Brassica carinata HOM05D003991 ORTHO05D004883 5.9e-288 994.2 779 66.6
BcaC06g30850 Brassica carinata HOM05D003991 ORTHO05D004883 7.8e-288 993.8 784 66.5
C07p38530 Brassica napus HOM05D003991 ORTHO05D004883 1.7e-287 992.6 779 66.6
BolC7t44375H Brassica oleracea HOM05D003991 ORTHO05D004883 1.7e-287 992.6 779 66.6
Thecc.04G106400 Theobroma cacao HOM05D003991 ORTHO05D004883 1.3e-282 976.5 643 76.8
ATR0605G126 Amborella trichopoda HOM05D003991 ORTHO05D004883 1.2e-280 969.9 797 64.1
Lsat_1_v5_gn_2_90201 Lactuca sativa HOM05D003991 ORTHO05D004883 3.5e-280 968.4 799 64.3
Ah.16g101030 Amaranthus hybridus HOM05D003991 ORTHO05D004883 1.9e-278 962.6 763 66.3
CiPaw.04G052100 Carya illinoinensis HOM05D003991 ORTHO05D004883 1.6e-277 959.5 796 66.2
Gohir.A07G179600 Gossypium hirsutum HOM05D003991 ORTHO05D004883 1.4e-273 946.4 643 74.3
Gohir.D07G186400 Gossypium hirsutum HOM05D003991 ORTHO05D004883 1.7e-271 939.5 643 74.0
C09p04400 Brassica napus HOM05D003991 ORTHO05D004883 2.1e-269 932.6 774 64.2
Aqoxy3G03722 Aquilegia oxysepala HOM05D003991 ORTHO05D004883 8.1e-269 930.6 779 65.3
CDE06G2000 Ceratophyllum demersum HOM05D003991 ORTHO05D004883 4.0e-268 928.3 802 61.0
BraA09t36055Z Brassica rapa HOM05D003991 ORTHO05D004883 1.2e-267 926.8 772 63.5
BolC9t53370H Brassica oleracea HOM05D003991 ORTHO05D004883 1.2e-264 916.8 771 63.4
A09p04180 Brassica napus HOM05D003991 ORTHO05D004883 3.3e-262 908.7 773 63.4
BcaC04g23813 Brassica carinata HOM05D003991 ORTHO05D004883 5.8e-251 871.3 773 60.9
HPP92_025879 Vanilla planifolia HOM05D003991 ORTHO05D004883 1.7e-247 859.8 779 59.4
CSS0050035 Camellia sinensis var. sinensis HOM05D003991 ORTHO05D004883 2.3e-247 859.4 704 67.8
SEGI_18103 Sequoiadendron giganteum HOM05D003991 ORTHO05D004883 2.3e-247 859.4 815 57.3
HanXRQChr07g0200011 Helianthus annuus HOM05D003991 ORTHO05D004883 1.9e-246 856.3 812 57.3
ECA238G0416 Erigeron canadensis HOM05D003991 ORTHO05D004883 8.1e-245 850.9 791 58.9
Sc11g0008820 Simmondsia chinensis HOM05D003991 ORTHO05D004883 5.1e-215 751.9 642 64.5
BcaC04g23825 Brassica carinata HOM05D003991 ORTHO05D004883 6.7e-215 751.5 638 62.9
SMO147G0301 Selaginella moellendorffii HOM05D003991 ORTHO05D004883 1.6e-200 703.7 798 49.1
Actinidia26270 Actinidia chinensis HOM05D003991 ORTHO05D004883 3.3e-198 696.0 481 74.8
Pp3c9_9760 Physcomitrium patens HOM05D003991 ORTHO05D004883 4.7e-184 649.0 848 46.1
Pp3c9_9870 Physcomitrium patens HOM05D003991 ORTHO05D004883 4.7e-184 649.0 848 46.1
Mapoly0016s0130 Marchantia polymorpha HOM05D003991 ORTHO05D004883 1.0e-178 631.3 873 43.9
Zm00001eb311840 Zea mays HOM05D003991 ORTHO05D004883 6.1e-168 595.5 459 66.2
Pp3c15_7610 Physcomitrium patens HOM05D003991 ORTHO05D004883 4.0e-167 592.8 850 43.4
ECA285G0010 Erigeron canadensis HOM05D003991 ORTHO05D004883 2.9e-165 586.6 617 54.0
Zm00001eb099080 Zea mays HOM05D003991 ORTHO05D004883 1.6e-163 580.9 579 57.5
Pp3c10_8720 Physcomitrium patens HOM05D003991 ORTHO05D004883 4.3e-161 572.8 650 49.7
Os09g0386600 Oryza sativa ssp. japonica HOM05D003991 ORTHO05D004883 2.8e-160 570.1 434 66.8
AagrBONN_evm.TU.Sc2ySwM_344.1887 Anthoceros agrestis HOM05D003991 ORTHO05D004883 5.2e-159 565.8 830 42.3
MBI17_g36999_MAGBIO Magnolia biondii HOM05D003991 ORTHO05D004883 5.1e-154 549.3 533 57.8
CARHR263670 Cardamine hirsuta HOM05D003991 ORTHO05D004883 2.4e-127 460.7 401 62.6
BcaB04g19523 Brassica carinata HOM05D003991 ORTHO05D004883 9.7e-105 385.6 593 43.5
BcaC04g23815 Brassica carinata HOM05D003991 ORTHO05D004883 7.9e-99 365.9 616 41.6
CBR_g36314 Chara braunii HOM05D003991 ORTHO05D004883 5.3e-79 300.1 766 31.5
Dinv33866 Davidia involucrata HOM05D003991 ORTHO05D004883 2.9e-77 294.3 213 74.6
arahy.Tifrunner.gnm1.ann1.VU455X Arachis hypogaea HOM05D003991 ORTHO05D004883 2.0e-73 281.6 211 66.8
Aa31LG1G6630 Aethionema arabicum HOM05D003991 ORTHO05D004883 9.8e-73 279.3 291 55.7
arahy.Tifrunner.gnm1.ann1.994D9I Arachis hypogaea HOM05D003991 ORTHO05D004883 2.7e-70 271.2 196 68.4
arahy.Tifrunner.gnm1.ann1.52AFQE Arachis hypogaea HOM05D003991 ORTHO05D004883 4.5e-70 270.4 196 68.4
arahy.Tifrunner.gnm1.ann1.YE0A4T Arachis hypogaea HOM05D003991 ORTHO05D004883 4.5e-70 270.4 196 68.4
Dinv33867 Davidia involucrata HOM05D003991 ORTHO05D004883 4.7e-67 260.4 208 64.9
Sp7g03030 Schrenkiella parvula HOM05D003991 ORTHO05D004883 4.5e-62 243.8 239 55.2
BcaC04g23820 Brassica carinata HOM05D003991 ORTHO05D004883 6.6e-61 240.0 464 39.0
SMO147G0173 Selaginella moellendorffii HOM05D003991 ORTHO05D004883 2.2e-56 224.9 510 34.9
MD09G1075300 Malus domestica HOM05D003991 ORTHO05D004883 8.9e-50 203.0 119 78.2
Dinv33865 Davidia involucrata HOM05D003991 ORTHO05D004883 1.5e-44 185.7 132 75.8
BcaC04g23819 Brassica carinata HOM05D003991 ORTHO05D004883 1.1e-36 159.5 149 57.0
CSS0000762 Camellia sinensis var. sinensis HOM05D003991 ORTHO05D004883 1.2e-35 156.0 82 80.5
CSS0038698 Camellia sinensis var. sinensis HOM05D003991 ORTHO05D004883 1.2e-35 156.0 82 80.5
Sc11g0008830 Simmondsia chinensis HOM05D003991 ORTHO05D004883 1.2e-35 156.0 87 78.2
HPP92_006579 Vanilla planifolia HOM05D003991 ORTHO05D004883 4.7e-35 154.1 231 45.5
SMO147G0397 Selaginella moellendorffii HOM05D003991 ORTHO05D050858 9.2e-31 139.8 146 50.0
HPP92_006533 Vanilla planifolia HOM05D003991 ORTHO05D004883 3.5e-30 137.9 362 31.5
HPP92_026595 Vanilla planifolia HOM05D003991 ORTHO05D004883 5.6e-28 130.6 131 57.3
arahy.Tifrunner.gnm1.ann1.Q8CATI Arachis hypogaea HOM05D003991 ORTHO05D004883 6.0e-22 110.5 75 73.3
BcaC04g23821 Brassica carinata HOM05D003991 ORTHO05D004883 1.3e-21 109.4 87 58.6
HPP92_028494 Vanilla planifolia HOM05D003991 ORTHO05D004883 2.5e-20 105.1 125 48.8
BcaB04g19526 Brassica carinata HOM05D003991 ORTHO05D004883 9.6e-20 103.2 74 63.5
Medtr7g008870 Medicago truncatula HOM05D003991 ORTHO05D004883 9.0e-18 96.7 67 67.2
Dinv33864 Davidia involucrata HOM05D003991 ORTHO05D004883 2.9e-16 91.7 113 49.6
HPP92_028205 Vanilla planifolia HOM05D003991 ORTHO05D004883 8.4e-16 90.1 147 39.5
HPP92_026824 Vanilla planifolia HOM05D003991 ORTHO05D004883 2.4e-15 88.6 108 47.2
Cfa002005 Carpinus fangiana HOM05D003991 ORTHO05D009743 4.2e-15 87.8 56 73.2
HPP92_026934 Vanilla planifolia HOM05D003881 ORTHO05D004343 4.2e-15 87.8 85 55.3
Medtr7g051850 Medicago truncatula HOM05D003991 ORTHO05D004883 9.3e-15 86.7 59 67.8
QL05p023649 Quercus lobata HOM05D003991 ORTHO05D004883 4.3e-12 77.8 53 77.4
Cfa020174 Carpinus fangiana HOM05D003991 ORTHO05D004883 9.6e-12 76.6 73 56.2
Os11g0189900 Oryza sativa ssp. japonica HOM05D003991 ORTHO05D298446 9.0e-10 70.1 77 49.4
QL01p030546 Quercus lobata HOM05D003991 ORTHO05D004883 9.0e-10 70.1 52 71.2
SEGI_36661 Sequoiadendron giganteum HOM05D001164 ORTHO05D018381 9.0e-10 70.1 77 50.6
QL05p049573 Quercus lobata HOM05D003991 ORTHO05D004883 3.4e-09 68.2 51 68.6
QL05p049558 Quercus lobata HOM05D003991 ORTHO05D004883 1.7e-08 65.9 48 72.9
HPP92_027770 Vanilla planifolia HOM05D003991 ORTHO05D432268 4.9e-08 64.3 52 61.5
HPP92_028743 Vanilla planifolia HOM05D003991 ORTHO05D004883 2.7e-06 58.5 78 48.7


User provided reference genes

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