Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold148G36431 Striga asiatica HOM05D030106 ORTHO05D030155 1.5e-71 272.7 133 100.0
Dinv44560 Davidia involucrata HOM05D008098 ORTHO05D009893 3.3e-10 68.9 72 43.1
Dinv14021 Davidia involucrata HOM05D008098 ORTHO05D009893 2.8e-09 65.9 63 44.4
CSS0035580 Camellia sinensis var. sinensis HOM05D008098 ORTHO05D009893 2.3e-08 62.8 64 43.8
CSS0015317 Camellia sinensis var. sinensis HOM05D008098 ORTHO05D009893 3.1e-08 62.4 73 41.1
CSS0044396 Camellia sinensis var. sinensis HOM05D008098 ORTHO05D009893 4.0e-08 62.0 64 43.8
COL.COLO4_11875 Corchorus olitorius HOM05D008098 ORTHO05D009893 1.5e-07 60.1 72 40.3
Haze_16130 Corylus avellana HOM05D000562 ORTHO05D000388 1.5e-07 60.1 56 51.8
CiPaw.01G212200 Carya illinoinensis HOM05D000562 ORTHO05D000388 2.0e-07 59.7 57 50.9
Medtr5g006830 Medicago truncatula HOM05D030106 ORTHO05D030155 2.0e-07 59.7 43 55.8
Medtr5g084640 Medicago truncatula HOM05D030106 ORTHO05D030155 2.6e-07 59.3 42 57.1
Rhsim13G0027200 Rhododendron simsii HOM05D008098 ORTHO05D009893 2.6e-07 59.3 77 41.6
Potri.002G050100 Populus trichocarpa HOM05D008098 ORTHO05D009893 5.8e-07 58.2 42 54.8
Duzib138G1817 Durio zibethinus HOM05D008098 ORTHO05D009893 7.5e-07 57.8 64 40.6
Glyma.16G013000 Glycine max HOM05D000562 ORTHO05D000388 7.5e-07 57.8 69 42.0
MBI04_g46282_MAGBIO Magnolia biondii HOM05D000562 ORTHO05D000388 7.5e-07 57.8 88 37.5
Phvul.010G124000 Phaseolus vulgaris HOM05D000562 ORTHO05D000388 7.5e-07 57.8 41 56.1
PGR044G2144 Punica granatum HOM05D008098 ORTHO05D009893 7.5e-07 57.8 41 51.2
EL10Ac7g16484 Beta vulgaris HOM05D000562 ORTHO05D000388 9.8e-07 57.4 57 47.4
Hma1.2p1_1572F.1_g291470 Hydrangea macrophylla HOM05D008098 ORTHO05D009893 9.8e-07 57.4 73 41.1
Medtr8g022950 Medicago truncatula HOM05D000562 ORTHO05D000388 9.8e-07 57.4 67 43.3
TAR636G3050 Trochodendron aralioides HOM05D008098 ORTHO05D009893 9.8e-07 57.4 86 38.4
Lalb_Chr23g0270681 Lupinus albus HOM05D000562 ORTHO05D000388 1.3e-06 57.0 45 46.7
SEGI_14383 Sequoiadendron giganteum HOM05D000690 ORTHO05D000388 1.3e-06 57.0 44 52.3
VMungo0331G1346 Vigna mungo HOM05D000562 ORTHO05D000388 1.3e-06 57.0 69 40.6
VMungo1309G1386 Vigna mungo HOM05D000690 ORTHO05D001022 1.3e-06 57.0 77 37.7
Actinidia00786 Actinidia chinensis HOM05D008098 ORTHO05D009893 1.7e-06 56.6 73 42.5
MSTRG.12554 Avicennia marina HOM05D008098 ORTHO05D009893 1.7e-06 56.6 49 44.9
Dinv14007 Davidia involucrata HOM05D000690 ORTHO05D001022 2.2e-06 56.2 55 45.5
Glyma.07G044900 Glycine max HOM05D000562 ORTHO05D000388 2.2e-06 56.2 41 53.7
Lj3g0026093 Lotus japonicus HOM05D000562 ORTHO05D000388 2.2e-06 56.2 41 56.1
CANSAT78G2449 Cannabis sativa HOM05D000562 ORTHO05D000388 2.9e-06 55.8 78 38.5
Cfa015417 Carpinus fangiana HOM05D000562 ORTHO05D000388 2.9e-06 55.8 58 44.8
AUR62001415 Chenopodium quinoa HOM05D000562 ORTHO05D000388 2.9e-06 55.8 62 45.2
Phvul.009G099100 Phaseolus vulgaris HOM05D000690 ORTHO05D001022 2.9e-06 55.8 77 36.4
QL05p001408 Quercus lobata HOM05D000562 ORTHO05D000388 2.9e-06 55.8 63 42.9
Atru.chr1.4111 Acer truncatum HOM05D000562 ORTHO05D000388 3.7e-06 55.5 56 46.4
CANSAT56G3481 Cannabis sativa HOM05D000562 ORTHO05D000388 3.7e-06 55.5 41 58.5
Dinv34781 Davidia involucrata HOM05D008098 ORTHO05D009893 3.7e-06 55.5 71 40.8
Eucgr.H03950 Eucalyptus grandis HOM05D000690 ORTHO05D000388 3.7e-06 55.5 62 43.5
Psat4g165880 Pisum sativum HOM05D000562 ORTHO05D000388 3.7e-06 55.5 41 53.7
Sabra05G0162400 Salix brachista HOM05D008098 ORTHO05D009893 3.7e-06 55.5 42 50.0
TPR.G19194 Trifolium pratense HOM05D000562 ORTHO05D000388 3.7e-06 55.5 66 39.4
TWI73G0337 Tripterygium wilfordii HOM05D000690 ORTHO05D000388 3.7e-06 55.5 50 44.0
Actinidia23529 Actinidia chinensis HOM05D008098 ORTHO05D009893 4.9e-06 55.1 76 36.8
Aa31LG3G15730 Aethionema arabicum HOM05D000690 ORTHO05D001022 4.9e-06 55.1 43 48.8
CiPaw.01G146100 Carya illinoinensis HOM05D000562 ORTHO05D000388 4.9e-06 55.1 73 39.7
Haze_01172 Corylus avellana HOM05D000562 ORTHO05D000388 4.9e-06 55.1 58 44.8
Gohir.D08G205000 Gossypium hirsutum HOM05D008098 ORTHO05D009893 4.9e-06 55.1 47 48.9
Gorai.004G217100 Gossypium raimondii HOM05D008098 ORTHO05D009893 4.9e-06 55.1 47 48.9
TAR260G0007 Trochodendron aralioides HOM05D008098 ORTHO05D009893 4.9e-06 55.1 82 36.6
MSTRG.17457 Avicennia marina HOM05D008098 ORTHO05D009893 6.4e-06 54.7 67 40.3
CSS0009367 Camellia sinensis var. sinensis HOM05D000562 ORTHO05D000388 6.4e-06 54.7 41 53.7
CSS0046205 Camellia sinensis var. sinensis HOM05D000562 ORTHO05D000388 6.4e-06 54.7 41 53.7
CiPaw.02G080500 Carya illinoinensis HOM05D000562 ORTHO05D000388 6.4e-06 54.7 67 41.8
Gohir.A08G186800 Gossypium hirsutum HOM05D008098 ORTHO05D009893 6.4e-06 54.7 47 48.9
Gohir.D09G220150 Gossypium hirsutum HOM05D008098 ORTHO05D009893 6.4e-06 54.7 48 45.8
Lalb_Chr17g0343321 Lupinus albus HOM05D000562 ORTHO05D000388 6.4e-06 54.7 41 51.2
MD08G1134900 Malus domestica HOM05D000690 ORTHO05D001022 6.4e-06 54.7 57 38.6
Oeu023884.1 Olea europaea HOM05D008098 ORTHO05D009893 6.4e-06 54.7 40 50.0
Aqoxy7G01779 Aquilegia oxysepala HOM05D000690 ORTHO05D001022 8.3e-06 54.3 66 40.9
Manes.04G150300 Manihot esculenta HOM05D000562 ORTHO05D000388 8.3e-06 54.3 69 37.7
Pp3c25_400 Physcomitrium patens HOM05D000562 ORTHO05D000388 8.3e-06 54.3 43 46.5
Rhsim08G0243900 Rhododendron simsii HOM05D000562 ORTHO05D000388 8.3e-06 54.3 62 41.9
THA.LOC104810583 Tarenaya hassleriana HOM05D000562 ORTHO05D000388 8.3e-06 54.3 43 48.8


User provided reference genes

Program Settings