Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold147G36374 Striga asiatica HOM05D000919 ORTHO05D403102 3.9e-60 234.6 117 100.0
SGA_v2.0_scaffold89G27511 Striga asiatica HOM05D000919 ORTHO05D004442 8.9e-28 127.1 63 100.0
unitig_748.g7916 Utricularia gibba HOM05D000919 ORTHO05D001187 8.6e-15 84.0 116 48.3
Migut.M01411 Erythranthe guttata HOM05D000919 ORTHO05D001187 4.3e-14 81.6 75 54.7
SGA_v2.0_scaffold4G01865 Striga asiatica HOM05D000919 ORTHO05D001187 3.6e-13 78.6 97 44.3
SGA_v2.0_scaffold7G03742 Striga asiatica HOM05D000919 ORTHO05D004442 8.1e-13 77.4 82 47.6
Migut.H01611 Erythranthe guttata HOM05D000919 ORTHO05D001187 2.0e-11 72.8 62 58.1
SGA_v2.0_scaffold49G18236 Striga asiatica HOM05D000919 ORTHO05D001187 4.4e-11 71.6 75 56.0
FAN21G0953 Fragaria x ananassa HOM05D000919 ORTHO05D001187 9.9e-11 70.5 68 54.4
DCAR_004906 Daucus carota HOM05D000919 ORTHO05D001187 1.3e-10 70.1 72 51.4
vmacro15766 Vaccinium macrocarpon HOM05D000919 ORTHO05D001187 6.4e-10 67.8 62 53.2
CAN.G696.23 Capsicum annuum HOM05D000919 ORTHO05D001187 8.3e-10 67.4 58 60.3
Rhsim02G0100800 Rhododendron simsii HOM05D000919 ORTHO05D001187 1.1e-09 67.0 62 56.5
Rhsim02G0103000 Rhododendron simsii HOM05D000919 ORTHO05D001187 1.1e-09 67.0 62 56.5
MSTRG.16029 Avicennia marina HOM05D000919 ORTHO05D001187 1.9e-09 66.2 62 53.2
Sabra16G0014500 Salix brachista HOM05D000919 ORTHO05D001187 1.9e-09 66.2 48 58.3
Nitab4.5_0000143g0130 Nicotiana tabacum HOM05D000919 ORTHO05D001187 2.4e-09 65.9 69 52.2
Actinidia11889 Actinidia chinensis HOM05D000919 ORTHO05D001187 4.1e-09 65.1 42 76.2
Nitab4.5_0003626g0110 Nicotiana tabacum HOM05D000919 ORTHO05D001187 4.1e-09 65.1 69 50.7
A02p31410 Brassica napus HOM05D000919 ORTHO05D001187 5.4e-09 64.7 70 50.0
C02p48750 Brassica napus HOM05D000919 ORTHO05D001187 5.4e-09 64.7 70 50.0
Cc09_g00780 Coffea canephora HOM05D000919 ORTHO05D001187 5.4e-09 64.7 62 53.2
Eucgr.E03918 Eucalyptus grandis HOM05D000919 ORTHO05D001187 5.4e-09 64.7 42 76.2
Oeu009406.1 Olea europaea HOM05D000919 ORTHO05D001187 5.4e-09 64.7 62 56.5
Oeu016817.1 Olea europaea HOM05D000919 ORTHO05D001187 5.4e-09 64.7 62 54.8
DCAR_027814 Daucus carota HOM05D000919 ORTHO05D001187 7.1e-09 64.3 57 54.4
Dinv13974 Davidia involucrata HOM05D000919 ORTHO05D001187 7.1e-09 64.3 62 53.2
FAN25G1217 Fragaria x ananassa HOM05D000919 ORTHO05D004442 7.1e-09 64.3 46 63.0
FvH4_3g00790 Fragaria vesca HOM05D000919 ORTHO05D001187 9.2e-09 63.9 46 63.0
FAN21G3723 Fragaria x ananassa HOM05D000919 ORTHO05D004442 9.2e-09 63.9 46 63.0
arahy.Tifrunner.gnm1.ann1.1G3A4W Arachis hypogaea HOM05D000919 ORTHO05D001187 2.1e-08 62.8 42 66.7
arahy.Tifrunner.gnm1.ann1.321WPP Arachis hypogaea HOM05D000919 ORTHO05D001187 2.1e-08 62.8 42 66.7
Dinv07413 Davidia involucrata HOM05D000919 ORTHO05D001187 2.7e-08 62.4 62 53.2
COL.COLO4_31900 Corchorus olitorius HOM05D000919 ORTHO05D001187 4.6e-08 61.6 66 53.0
HanXRQChr05g0129091 Helianthus annuus HOM05D000919 ORTHO05D001187 4.6e-08 61.6 71 49.3
Cpa.g.sc75.102 Carica papaya HOM05D000919 ORTHO05D001187 6.0e-08 61.2 61 55.7
Potri.006G014800 Populus trichocarpa HOM05D000919 ORTHO05D001187 6.0e-08 61.2 42 64.3
ECA234G2161 Erigeron canadensis HOM05D000919 ORTHO05D001187 7.8e-08 60.8 41 70.7
Lsat_1_v5_gn_7_13780 Lactuca sativa HOM05D000919 ORTHO05D001187 7.8e-08 60.8 62 53.2
SalBow1G1696 Salvia bowleyana HOM05D000919 ORTHO05D001187 1.0e-07 60.5 62 46.8
Carub.0008s0024 Capsella rubella HOM05D000919 ORTHO05D001187 1.3e-07 60.1 48 62.5
Manes.08G069730 Manihot esculenta HOM05D000919 ORTHO05D001187 1.3e-07 60.1 42 61.9
Peaxi162Scf00352g00711 Petunia axillaris HOM05D000919 ORTHO05D001187 1.3e-07 60.1 48 66.7
Nitab4.5_0001735g0120 Nicotiana tabacum HOM05D000919 ORTHO05D001187 1.7e-07 59.7 52 61.5
Nitab4.5_0005135g0020 Nicotiana tabacum HOM05D000919 ORTHO05D001187 1.7e-07 59.7 52 61.5
Potri.010G155300 Populus trichocarpa HOM05D000919 ORTHO05D001187 1.7e-07 59.7 42 61.9
Potri.010G155400 Populus trichocarpa HOM05D000919 ORTHO05D001187 1.7e-07 59.7 42 61.9
Potri.016G011100 Populus trichocarpa HOM05D000919 ORTHO05D001187 1.7e-07 59.7 42 61.9
Potri.016G011300 Populus trichocarpa HOM05D000919 ORTHO05D001187 1.7e-07 59.7 42 61.9
Duzib160G0201 Durio zibethinus HOM05D000919 ORTHO05D001187 2.3e-07 59.3 42 69.0
BcaC06g31375 Brassica carinata HOM05D000919 ORTHO05D001187 3.0e-07 58.9 75 48.0
MELO3C025555.2 Cucumis melo HOM05D000919 ORTHO05D001187 3.0e-07 58.9 41 70.7
CsaV3_1G017130 Cucumis sativus L. HOM05D000919 ORTHO05D001187 3.0e-07 58.9 41 70.7
BcaB07g30772 Brassica carinata HOM05D000919 ORTHO05D001187 3.9e-07 58.5 72 47.2
ClCG01G010420 Citrullus lanatus HOM05D000919 ORTHO05D001187 3.9e-07 58.5 46 63.0
Sp2g12270 Schrenkiella parvula HOM05D000919 ORTHO05D001187 3.9e-07 58.5 48 60.4
TWI63G1802 Tripterygium wilfordii HOM05D000919 ORTHO05D001187 3.9e-07 58.5 46 58.7
Ciclev10015837m.g Citrus clementina HOM05D000919 ORTHO05D001187 5.1e-07 58.2 42 64.3
Thhalv10000952m.g Eutrema salsugineum HOM05D000919 ORTHO05D001187 5.1e-07 58.2 48 58.3
Sed0012657 Sechium edule HOM05D000919 ORTHO05D001187 5.1e-07 58.2 41 68.3
Solyc05g054130.4 Solanum lycopersicum HOM05D000919 ORTHO05D001187 5.1e-07 58.2 65 55.4
AL8G10430 Arabidopsis lyrata HOM05D000919 ORTHO05D001187 6.6e-07 57.8 48 60.4
AT5G47540 Arabidopsis thaliana HOM05D000919 ORTHO05D001187 6.6e-07 57.8 48 60.4
Gohir.A05G174900 Gossypium hirsutum HOM05D000919 ORTHO05D001187 6.6e-07 57.8 42 66.7
Gohir.D05G177900 Gossypium hirsutum HOM05D000919 ORTHO05D001187 6.6e-07 57.8 42 66.7
Gorai.009G183300 Gossypium raimondii HOM05D000919 ORTHO05D001187 6.6e-07 57.8 42 66.7
QL05p069195 Quercus lobata HOM05D000919 ORTHO05D001187 6.6e-07 57.8 42 59.5
Sabra06G0010400 Salix brachista HOM05D000919 ORTHO05D001187 6.6e-07 57.8 72 41.7
Sabra16G0014800 Salix brachista HOM05D000919 ORTHO05D001187 6.6e-07 57.8 42 57.1
CSS0016248 Camellia sinensis var. sinensis HOM05D000919 ORTHO05D001187 8.6e-07 57.4 46 63.0
CSS0020272 Camellia sinensis var. sinensis HOM05D000919 ORTHO05D001187 8.6e-07 57.4 46 63.0
CSS0037254 Camellia sinensis var. sinensis HOM05D000919 ORTHO05D001187 8.6e-07 57.4 42 69.0
Sp7g16900 Schrenkiella parvula HOM05D000919 ORTHO05D001187 8.6e-07 57.4 49 57.1
Aa31sc118G110 Aethionema arabicum HOM05D000919 ORTHO05D001187 1.1e-06 57.0 44 63.6
BcaC03g16969 Brassica carinata HOM05D000919 ORTHO05D001187 1.1e-06 57.0 48 58.3
BolC2t10967H Brassica oleracea HOM05D000919 ORTHO05D001187 1.1e-06 57.0 48 58.3
BraA02t08143Z Brassica rapa HOM05D000919 ORTHO05D001187 1.1e-06 57.0 48 58.3
CiPaw.09G103600 Carya illinoinensis HOM05D000919 ORTHO05D001187 1.1e-06 57.0 43 65.1
Gohir.D10G008500 Gossypium hirsutum HOM05D000919 ORTHO05D001187 1.1e-06 57.0 42 66.7
Gorai.011G009300 Gossypium raimondii HOM05D000919 ORTHO05D001187 1.1e-06 57.0 42 66.7
PGR004G2894 Punica granatum HOM05D000919 ORTHO05D001187 1.1e-06 57.0 42 66.7
Solyc11g012400.2 Solanum lycopersicum HOM05D000919 ORTHO05D001187 1.1e-06 57.0 46 65.2
Sopen11g007150 Solanum pennellii HOM05D000919 ORTHO05D001187 1.1e-06 57.0 46 65.2
CAN.G449.21 Capsicum annuum HOM05D000919 ORTHO05D001187 1.5e-06 56.6 39 64.1
AL7G37430 Arabidopsis lyrata HOM05D000919 ORTHO05D001187 1.9e-06 56.2 48 56.2
AT4G17270 Arabidopsis thaliana HOM05D000919 ORTHO05D001187 1.9e-06 56.2 48 56.2
Carub.0007s2412 Capsella rubella HOM05D000919 ORTHO05D001187 1.9e-06 56.2 48 56.2
Glyma.09G011000 Glycine max HOM05D000919 ORTHO05D001187 1.9e-06 56.2 42 64.3
Gohir.A10G008800 Gossypium hirsutum HOM05D000919 ORTHO05D001187 1.9e-06 56.2 42 64.3
Sed0007328 Sechium edule HOM05D000919 ORTHO05D001187 1.9e-06 56.2 46 60.9
GSVIVG01006719001 Vitis vinifera HOM05D000919 ORTHO05D001187 1.9e-06 56.2 62 46.8
A03p50380 Brassica napus HOM05D000919 ORTHO05D001187 2.5e-06 55.8 64 51.6
BraA03t14128Z Brassica rapa HOM05D000919 ORTHO05D001187 2.5e-06 55.8 64 51.6
CANSAT56G3054 Cannabis sativa HOM05D000919 ORTHO05D001187 2.5e-06 55.8 42 64.3
Glyma.15G115400 Glycine max HOM05D000919 ORTHO05D001187 2.5e-06 55.8 41 65.9
Lalb_Chr20g0119311 Lupinus albus HOM05D000919 ORTHO05D001187 2.5e-06 55.8 42 61.9
THA.LOC104798372 Tarenaya hassleriana HOM05D000919 ORTHO05D001187 2.5e-06 55.8 48 58.3
Atru.chr1.2380 Acer truncatum HOM05D000919 ORTHO05D001187 3.3e-06 55.5 46 58.7
BolC7t43660H Brassica oleracea HOM05D000919 ORTHO05D001187 3.3e-06 55.5 68 50.0
CiPaw.10G078700 Carya illinoinensis HOM05D000919 ORTHO05D001187 3.3e-06 55.5 65 47.7
PGSC0003DMG401013284 Solanum tuberosum HOM05D000919 ORTHO05D001187 3.3e-06 55.5 46 63.0
THA.LOC104812803 Tarenaya hassleriana HOM05D000919 ORTHO05D001187 3.3e-06 55.5 48 56.2
Manes.02G106400 Manihot esculenta HOM05D000919 ORTHO05D001187 4.3e-06 55.1 57 54.4
Phvul.006G142500 Phaseolus vulgaris HOM05D000919 ORTHO05D001187 4.3e-06 55.1 62 48.4
Psat1g175240 Pisum sativum HOM05D000919 ORTHO05D001187 4.3e-06 55.1 41 61.0
PGSC0003DMG400008459 Solanum tuberosum HOM05D000919 ORTHO05D001187 4.3e-06 55.1 43 62.8
Thecc.06G234800 Theobroma cacao HOM05D000919 ORTHO05D001187 5.6e-06 54.7 42 64.3
MD05G1359100 Malus domestica HOM05D000919 ORTHO05D001187 7.3e-06 54.3 42 64.3
MD10G1334800 Malus domestica HOM05D000919 ORTHO05D001187 7.3e-06 54.3 42 64.3
Sopen05g032620 Solanum pennellii HOM05D000919 ORTHO05D001187 7.3e-06 54.3 43 62.8
A01p20090 Brassica napus HOM05D000919 ORTHO05D001187 9.5e-06 53.9 48 58.3
BraA01t01933Z Brassica rapa HOM05D000919 ORTHO05D001187 9.5e-06 53.9 48 58.3
Haze_06954 Corylus avellana HOM05D000919 ORTHO05D001187 9.5e-06 53.9 41 63.4
PSO541G2781 Papaver somniferum HOM05D000919 ORTHO05D001187 9.5e-06 53.9 42 66.7
PSO675G1844 Papaver somniferum HOM05D000919 ORTHO05D001187 9.5e-06 53.9 42 66.7
VMungo0540G0204 Vigna mungo HOM05D000919 ORTHO05D001187 9.5e-06 53.9 62 48.4


User provided reference genes

Program Settings