Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold147G36363 Striga asiatica HOM05D004666 ORTHO05D005822 0.0e+00 1643.6 834 100.0
Migut.J00966 Erythranthe guttata HOM05D004666 ORTHO05D005822 2.3e-247 859.4 834 57.2
SalBow3G3865 Salvia bowleyana HOM05D004666 ORTHO05D005822 2.3e-231 806.2 844 54.1
Oeu040521.1 Olea europaea HOM05D004666 ORTHO05D005822 9.3e-212 741.1 791 54.1
Dinv21227 Davidia involucrata HOM05D004666 ORTHO05D005822 2.7e-195 686.4 868 46.3
Rhsim05G0022800 Rhododendron simsii HOM05D004666 ORTHO05D005822 2.2e-189 666.8 910 44.8
GSVIVG01032069001 Vitis vinifera HOM05D004666 ORTHO05D005822 8.7e-178 628.2 795 44.4
TAR365G1212 Trochodendron aralioides HOM05D004666 ORTHO05D005822 1.1e-175 621.3 850 42.8
Nitab4.5_0000794g0050 Nicotiana tabacum HOM05D004666 ORTHO05D005822 2.4e-175 620.2 910 41.9
CiPaw.09G011000 Carya illinoinensis HOM05D004666 ORTHO05D005822 5.9e-174 615.5 851 44.5
Lsat_1_v5_gn_1_48480 Lactuca sativa HOM05D004666 ORTHO05D005822 4.2e-172 609.4 764 46.5
Gorai.001G233200 Gossypium raimondii HOM05D004666 ORTHO05D005822 1.2e-171 607.8 881 40.6
vmacro22687 Vaccinium macrocarpon HOM05D004666 ORTHO05D005822 1.2e-171 607.8 1033 39.6
unitig_749.g14294 Utricularia gibba HOM05D004666 ORTHO05D005822 7.9e-171 605.1 760 46.4
Cc06_g05530 Coffea canephora HOM05D004666 ORTHO05D005822 1.4e-170 604.4 936 42.4
Cfa002067 Carpinus fangiana HOM05D004666 ORTHO05D005822 3.9e-170 602.8 924 41.9
Sp1g17360 Schrenkiella parvula HOM05D004666 ORTHO05D005822 1.5e-169 600.9 835 43.5
Sopen09g004490 Solanum pennellii HOM05D004666 ORTHO05D005822 4.3e-169 599.4 919 41.0
Gohir.A07G200500 Gossypium hirsutum HOM05D004666 ORTHO05D005822 5.7e-169 599.0 881 40.7
Solyc09g009710.4 Solanum lycopersicum HOM05D004666 ORTHO05D005822 5.7e-169 599.0 922 41.1
Thecc.01G223300 Theobroma cacao HOM05D004666 ORTHO05D005822 2.2e-168 597.0 862 45.0
vmacro17219 Vaccinium macrocarpon HOM05D004666 ORTHO05D005822 1.4e-167 594.3 1059 38.5
QL07p039593 Quercus lobata HOM05D004666 ORTHO05D005822 9.1e-167 591.7 863 41.4
Gohir.D07G206800 Gossypium hirsutum HOM05D004666 ORTHO05D005822 5.9e-166 589.0 881 40.1
HanXRQChr01g0029141 Helianthus annuus HOM05D004666 ORTHO05D005822 3.8e-165 586.3 867 43.1
COL.COLO4_15658 Corchorus olitorius HOM05D004666 ORTHO05D005822 2.5e-164 583.6 982 37.7
TWI34G1071 Tripterygium wilfordii HOM05D004666 ORTHO05D005822 2.5e-164 583.6 868 41.9
A08p29790 Brassica napus HOM05D004666 ORTHO05D005822 9.4e-164 581.6 827 42.6
BolC5t30496H Brassica oleracea HOM05D004666 ORTHO05D005822 9.4e-164 581.6 821 42.6
BolC8t49572H Brassica oleracea HOM05D004666 ORTHO05D005822 1.2e-163 581.3 838 42.0
BcaB03g12912 Brassica carinata HOM05D004666 ORTHO05D005822 3.6e-163 579.7 799 43.6
Thhalv10006802m.g Eutrema salsugineum HOM05D004666 ORTHO05D005822 7.9e-163 578.6 823 42.2
C08p19490 Brassica napus HOM05D004666 ORTHO05D005822 2.3e-162 577.0 837 42.4
BraA08t34913Z Brassica rapa HOM05D004666 ORTHO05D005822 2.3e-162 577.0 818 42.2
Potri.008G200900 Populus trichocarpa HOM05D004666 ORTHO05D005822 8.8e-162 575.1 904 40.6
Aqoxy3G00997 Aquilegia oxysepala HOM05D004666 ORTHO05D005822 2.0e-161 573.9 905 39.0
C05p17890 Brassica napus HOM05D004666 ORTHO05D005822 3.3e-161 573.2 827 41.5
Carub.0001s1905 Capsella rubella HOM05D004666 ORTHO05D005822 3.3e-161 573.2 817 42.6
Atru.chr8.1588 Acer truncatum HOM05D004666 ORTHO05D005822 4.4e-161 572.8 708 47.2
Lj2C133G10 Lonicera japonica HOM05D004666 ORTHO05D005822 5.7e-161 572.4 984 38.3
THA.LOC104827512 Tarenaya hassleriana HOM05D004666 ORTHO05D005822 5.7e-161 572.4 852 42.4
A06p15660 Brassica napus HOM05D004666 ORTHO05D005822 2.2e-160 570.5 798 42.1
BraA06t24675Z Brassica rapa HOM05D004666 ORTHO05D005822 2.2e-160 570.5 798 42.1
Manes.13G012000 Manihot esculenta HOM05D004666 ORTHO05D005822 1.1e-159 568.2 881 41.9
CARHR020050 Cardamine hirsuta HOM05D004666 ORTHO05D005822 2.4e-159 567.0 829 41.1
CANSAT54G2995 Cannabis sativa HOM05D004666 ORTHO05D005822 2.0e-158 563.9 807 41.3
FvH4_6g18260 Fragaria vesca HOM05D004666 ORTHO05D005822 4.5e-158 562.8 997 37.0
DCAR_013376 Daucus carota HOM05D004666 ORTHO05D005822 1.3e-157 561.2 875 40.1
Nitab4.5_0009916g0020 Nicotiana tabacum HOM05D004666 ORTHO05D005822 3.8e-157 559.7 910 41.4
Prupe.7G114200 Prunus persica HOM05D004666 ORTHO05D005822 3.8e-157 559.7 965 39.0
AT1G19485 Arabidopsis thaliana HOM05D004666 ORTHO05D005822 5.0e-157 559.3 817 41.0
Aa31LG7G4140 Aethionema arabicum HOM05D004666 ORTHO05D005822 8.5e-157 558.5 828 41.8
MBI17_g35786_MAGBIO Magnolia biondii HOM05D004666 ORTHO05D005822 1.9e-156 557.4 779 42.0
Medtr1g060580 Medicago truncatula HOM05D004666 ORTHO05D005822 1.6e-155 554.3 898 39.5
Peaxi162Scf00015g00639 Petunia axillaris HOM05D004666 ORTHO05D005822 4.7e-155 552.7 896 43.0
EL10Ac7g16949 Beta vulgaris HOM05D004666 ORTHO05D005822 8.0e-155 552.0 944 36.3
RcHm_v2.0_Chr4g0409331 Rosa chinensis HOM05D004666 ORTHO05D005822 1.1e-153 548.1 1032 35.3
Ca_26672_v3 Cicer arietinum L. HOM05D004666 ORTHO05D005822 1.3e-152 544.7 914 38.2
Ca_30723_v3 Cicer arietinum L. HOM05D004666 ORTHO05D005822 1.3e-152 544.7 914 38.2
Sed0022470 Sechium edule HOM05D004666 ORTHO05D005822 6.3e-152 542.3 893 40.6
Psat6g082920 Pisum sativum HOM05D004666 ORTHO05D005822 5.3e-151 539.3 958 38.6
TPR.G35431 Trifolium pratense HOM05D004666 ORTHO05D005822 7.7e-150 535.4 937 36.6
arahy.Tifrunner.gnm1.ann1.T4KAXF Arachis hypogaea HOM05D004666 ORTHO05D005822 1.7e-149 534.3 905 37.6
MELO3C009457.2 Cucumis melo HOM05D004666 ORTHO05D005822 3.8e-149 533.1 881 39.0
PGR142G0825 Punica granatum HOM05D004666 ORTHO05D005822 8.5e-149 531.9 874 40.3
FvH4_7g02500 Fragaria vesca HOM05D004666 ORTHO05D005822 1.1e-148 531.6 1032 35.5
Lalb_Chr02g0155381 Lupinus albus HOM05D004666 ORTHO05D005822 7.2e-148 528.9 989 35.1
MD09G1081300 Malus domestica HOM05D004666 ORTHO05D005822 7.2e-148 528.9 950 37.7
PSO384G1605 Papaver somniferum HOM05D004666 ORTHO05D005822 1.6e-147 527.7 1049 35.5
arahy.Tifrunner.gnm1.ann1.WFL2XE Arachis hypogaea HOM05D004666 ORTHO05D005822 2.7e-147 526.9 885 37.2
arahy.Tifrunner.gnm1.ann1.G8H5C8 Arachis hypogaea HOM05D004666 ORTHO05D005822 1.0e-146 525.0 913 36.7
ECA248G3102 Erigeron canadensis HOM05D004666 ORTHO05D005822 1.4e-146 524.6 1038 35.1
MD12G1022600 Malus domestica HOM05D004666 ORTHO05D005822 1.8e-146 524.2 934 38.8
Lj5g0013478 Lotus japonicus HOM05D004666 ORTHO05D005822 4.0e-146 523.1 1000 34.8
PSO425G0050 Papaver somniferum HOM05D004666 ORTHO05D005822 4.0e-146 523.1 1050 35.5
TWI73G1120 Tripterygium wilfordii HOM05D004666 ORTHO05D005822 7.5e-145 518.8 849 39.1
ClCG10G019140 Citrullus lanatus HOM05D004666 ORTHO05D005822 2.8e-144 516.9 897 38.6
CsaV3_3G037120 Cucumis sativus L. HOM05D004666 ORTHO05D005822 8.3e-144 515.4 975 36.7
Ciclev10011197m.g Citrus clementina HOM05D004666 ORTHO05D005822 5.4e-143 512.7 701 43.1
Glyma.10G068100 Glycine max HOM05D004666 ORTHO05D005822 5.0e-141 506.1 1053 32.6
Phvul.011G176600 Phaseolus vulgaris HOM05D004666 ORTHO05D005822 1.5e-140 504.6 1064 35.7
AL1G32230 Arabidopsis lyrata HOM05D004666 ORTHO05D005822 2.7e-139 500.4 705 42.8
Phvul.007G229800 Phaseolus vulgaris HOM05D004666 ORTHO05D005822 4.7e-139 499.6 1060 33.2
AUR62033523 Chenopodium quinoa HOM05D004666 ORTHO05D005822 8.8e-138 495.4 968 33.7
Hund26220 Selenicereus undatus HOM05D004666 ORTHO05D005822 8.8e-138 495.4 1066 33.1
Ah.08g210700 Amaranthus hybridus HOM05D004666 ORTHO05D005822 3.7e-136 490.0 995 33.6
Lj5g0018797 Lotus japonicus HOM05D004666 ORTHO05D005822 9.1e-135 485.3 890 36.1
ECA248G2596 Erigeron canadensis HOM05D004666 ORTHO05D005822 5.0e-133 479.6 1047 33.6
Sed0014063 Sechium edule HOM05D004666 ORTHO05D005822 6.6e-133 479.2 1038 35.6
FAN06G2408 Fragaria x ananassa HOM05D004666 ORTHO05D005822 2.5e-132 477.2 1065 33.1
arahy.Tifrunner.gnm1.ann1.LSN657 Arachis hypogaea HOM05D004666 ORTHO05D005822 8.0e-131 472.2 884 35.1
Nn2g14084 Nelumbo nucifera HOM05D004666 ORTHO05D005822 3.0e-130 470.3 627 43.1
VMungo0720G2175 Vigna mungo HOM05D004666 ORTHO05D005822 4.0e-130 469.9 1119 30.3
FAN03G3209 Fragaria x ananassa HOM05D004666 ORTHO05D005822 6.4e-128 462.6 1100 32.4
FAN02G3237 Fragaria x ananassa HOM05D004666 ORTHO05D005822 1.7e-125 454.5 834 35.7
Duzib114G0569 Durio zibethinus HOM05D004666 ORTHO05D005822 2.5e-124 450.7 801 39.2
Peaxi162Scf00036g00125 Petunia axillaris HOM05D004666 ORTHO05D005822 8.3e-120 435.6 917 37.4
CDE08G1659 Ceratophyllum demersum HOM05D004666 ORTHO05D005822 7.8e-118 429.1 818 34.4
RcHm_v2.0_Chr3g0472691 Rosa chinensis HOM05D004666 ORTHO05D005822 1.5e-116 424.9 486 46.9
HPP92_015079 Vanilla planifolia HOM05D004666 ORTHO05D005822 2.5e-116 424.1 422 51.2
Sc02g0001000 Simmondsia chinensis HOM05D004666 ORTHO05D005822 2.8e-115 420.6 973 34.4
Sabra08G0160300 Salix brachista HOM05D004666 ORTHO05D005822 2.6e-113 414.1 617 41.8
Sabra12G0045300 Salix brachista HOM05D004666 ORTHO05D005822 4.7e-107 393.3 655 39.5
FAN05G5602 Fragaria x ananassa HOM05D004666 ORTHO05D005822 1.4e-106 391.7 856 34.0
Haze_19573 Corylus avellana HOM05D004666 ORTHO05D005822 1.9e-95 354.8 580 40.2
Zm00001eb147330 Zea mays HOM05D004666 ORTHO05D005822 4.6e-94 350.1 499 38.5
Eucgr.K02035 Eucalyptus grandis HOM05D004666 ORTHO05D005822 4.0e-90 337.0 290 54.5
Os01g0858000 Oryza sativa ssp. japonica HOM05D004666 ORTHO05D005822 3.2e-87 327.4 348 47.1
AUR62028568 Chenopodium quinoa HOM05D004666 ORTHO05D005822 1.2e-86 325.5 494 39.1
Potri.006G036601 Populus trichocarpa HOM05D004666 ORTHO05D005822 7.9e-86 322.8 656 34.8
Pp3c1_31470 Physcomitrium patens HOM05D004666 ORTHO05D005822 3.6e-83 313.9 743 29.3
AagrBONN_evm.TU.Sc2ySwM_344.3422 Anthoceros agrestis HOM05D004666 ORTHO05D005822 8.4e-80 302.8 782 30.2
PGSC0003DMG400008959 Solanum tuberosum HOM05D004666 ORTHO05D005822 7.1e-79 299.7 581 38.2
Mapoly0021s0027 Marchantia polymorpha HOM05D004666 ORTHO05D005822 6.2e-75 286.6 748 29.7
Rhsim09G0020300 Rhododendron simsii HOM05D004666 ORTHO05D005822 2.9e-56 224.6 447 35.1
Cpa.g.sc5.49 Carica papaya HOM05D004666 ORTHO05D005822 4.3e-52 210.7 315 40.0
FAN09G1276 Fragaria x ananassa HOM05D004666 ORTHO05D005822 2.9e-48 198.0 266 44.7
RcHm_v2.0_Chr3g0472701 Rosa chinensis HOM05D004666 ORTHO05D005822 5.0e-48 197.2 282 42.6
Cpa.g.c36918 Carica papaya HOM05D004666 ORTHO05D005822 3.6e-46 191.0 212 45.8
FAN05G4874 Fragaria x ananassa HOM05D004666 ORTHO05D005822 3.6e-46 191.0 281 42.7
ATR0820G291 Amborella trichopoda HOM05D004666 ORTHO05D005822 1.8e-45 188.7 333 33.0
Hma1.2p1_2087F.1_g313760 Hydrangea macrophylla HOM05D004666 ORTHO05D005822 1.6e-41 175.6 292 39.4
CBR_g38478 Chara braunii HOM05D004666 ORTHO05D005822 2.6e-41 174.9 264 37.1
ATR0820G266 Amborella trichopoda HOM05D004666 ORTHO05D005822 6.5e-40 170.2 274 40.1
CDE08G0899 Ceratophyllum demersum HOM05D007279 ORTHO05D009212 6.5e-32 143.7 232 34.9
Hma1.2p1_0084F.1_g043500 Hydrangea macrophylla HOM05D004666 ORTHO05D005822 1.0e-29 136.3 342 30.4
SEGI_09998 Sequoiadendron giganteum HOM05D004666 ORTHO05D005822 1.2e-28 132.9 133 48.9
QL03p004438 Quercus lobata HOM05D004666 ORTHO05D005822 3.4e-28 131.3 188 41.0
Haze_16425 Corylus avellana HOM05D004666 ORTHO05D005822 3.8e-24 117.9 296 32.8
RhsimUnG0189100 Rhododendron simsii HOM05D004666 ORTHO05D005822 1.0e-21 109.8 225 35.1
Hma1.2p1_0084F.1_g043480 Hydrangea macrophylla HOM05D004666 ORTHO05D005822 8.8e-21 106.7 206 36.4
Eucgr.L02043 Eucalyptus grandis HOM05D004666 ORTHO05D005822 2.0e-20 105.5 199 39.7
QL03p004414 Quercus lobata HOM05D004666 ORTHO05D005822 2.6e-20 105.1 201 36.3
FAN14G5421 Fragaria x ananassa HOM05D004666 ORTHO05D005822 1.8e-18 99.0 220 35.0
SHI23868 Sapria himalayana HOM05D004666 ORTHO05D005822 5.0e-16 90.9 202 33.7
SEGI_32780 Sequoiadendron giganteum HOM05D004666 ORTHO05D005822 2.5e-15 88.6 208 30.8
arahy.Tifrunner.gnm1.ann1.AE8L4W Arachis hypogaea HOM05D004666 ORTHO05D005822 1.6e-14 85.9 160 34.4
Os02g0307300 Oryza sativa ssp. japonica HOM05D004666 ORTHO05D005822 2.8e-14 85.1 72 55.6
CDE08G0815 Ceratophyllum demersum HOM05D004666 ORTHO05D005822 8.0e-14 83.6 184 31.5
Hma1.2p1_2087F.1_g313780 Hydrangea macrophylla HOM05D004666 ORTHO05D005822 6.8e-13 80.5 204 31.4
CSS0049785 Camellia sinensis var. sinensis HOM05D004666 ORTHO05D005822 8.9e-13 80.1 94 46.8
FAN10G4251 Fragaria x ananassa HOM05D004666 ORTHO05D005822 8.9e-13 80.1 77 48.1
Hma1.2p1_0084F.1_g043490 Hydrangea macrophylla HOM05D004666 ORTHO05D005822 3.7e-11 74.7 86 45.3
Sabra06G0024800 Salix brachista HOM05D004666 ORTHO05D005822 1.4e-10 72.8 145 34.5
Haze_16424 Corylus avellana HOM05D004666 ORTHO05D005822 5.0e-08 64.3 205 27.8
QL04p079053 Quercus lobata HOM05D004666 ORTHO05D005822 1.6e-06 59.3 161 29.2
RcHm_v2.0_Chr7g0223981 Rosa chinensis HOM05D004666 ORTHO05D005822 2.1e-06 58.9 51 49.0
Sabra16G0037300 Salix brachista HOM05D004666 ORTHO05D017783 2.8e-06 58.5 48 58.3


User provided reference genes

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