Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold147G36360 Striga asiatica HOM05D005297 ORTHO05D006545 3.9e-102 374.8 187 100.0
Migut.N00940 Erythranthe guttata HOM05D005297 ORTHO05D006545 5.9e-82 307.8 178 86.0
SalBow6G5239 Salvia bowleyana HOM05D005297 ORTHO05D006545 4.2e-80 301.6 179 86.0
Eucgr.J00466 Eucalyptus grandis HOM05D005297 ORTHO05D006545 3.6e-79 298.5 178 83.1
MSTRG.18743 Avicennia marina HOM05D005297 ORTHO05D006545 7.9e-79 297.4 178 83.7
Nitab4.5_0003532g0010 Nicotiana tabacum HOM05D005297 ORTHO05D006545 1.5e-77 293.1 178 83.1
CAN.G1177.8 Capsicum annuum HOM05D005297 ORTHO05D006545 3.3e-77 292.0 172 84.3
Peaxi162Scf00544g00918 Petunia axillaris HOM05D005297 ORTHO05D006545 3.3e-77 292.0 172 85.5
HanXRQChr13g0408991 Helianthus annuus HOM05D005297 ORTHO05D006545 5.7e-77 291.2 178 78.7
CSS0010276 Camellia sinensis var. sinensis HOM05D005297 ORTHO05D006545 9.7e-77 290.4 178 80.9
Manes.11G159700 Manihot esculenta HOM05D005297 ORTHO05D006545 1.7e-76 289.7 178 78.7
Nitab4.5_0021448g0010 Nicotiana tabacum HOM05D005297 ORTHO05D006545 1.7e-76 289.7 172 84.9
CAN.G644.6 Capsicum annuum HOM05D005297 ORTHO05D006545 3.7e-76 288.5 178 81.5
THA.LOC104799541 Tarenaya hassleriana HOM05D005297 ORTHO05D006545 3.7e-76 288.5 178 79.2
Manes.14G159600 Manihot esculenta HOM05D005297 ORTHO05D006545 4.8e-76 288.1 178 78.1
Potri.009G146100 Populus trichocarpa HOM05D005297 ORTHO05D006545 4.8e-76 288.1 178 77.5
Atru.chr3.3335 Acer truncatum HOM05D005297 ORTHO05D006545 8.2e-76 287.3 178 79.2
Solyc11g067150.2 Solanum lycopersicum HOM05D005297 ORTHO05D006545 8.2e-76 287.3 177 81.4
Sopen11g026830 Solanum pennellii HOM05D005297 ORTHO05D006545 8.2e-76 287.3 177 81.4
PGSC0003DMG400007409 Solanum tuberosum HOM05D005297 ORTHO05D006545 1.1e-75 287.0 178 80.9
Sabra09G0113000 Salix brachista HOM05D005297 ORTHO05D006545 1.4e-75 286.6 178 77.5
Sabra09G0115400 Salix brachista HOM05D005297 ORTHO05D006545 1.4e-75 286.6 178 77.5
BcaB01g01797 Brassica carinata HOM05D005297 ORTHO05D006545 4.1e-75 285.0 178 79.8
Carub.0006s3210 Capsella rubella HOM05D005297 ORTHO05D006545 4.1e-75 285.0 178 78.7
Thhalv10029010m.g Eutrema salsugineum HOM05D005297 ORTHO05D006545 4.1e-75 285.0 178 78.7
unitig_736.g22397 Utricularia gibba HOM05D005297 ORTHO05D006545 4.1e-75 285.0 178 80.3
PGR119G1280 Punica granatum HOM05D005297 ORTHO05D006545 5.3e-75 284.6 178 79.8
QL02p014091 Quercus lobata HOM05D005297 ORTHO05D006545 5.3e-75 284.6 177 80.8
CARHR253330 Cardamine hirsuta HOM05D005297 ORTHO05D006545 9.1e-75 283.9 182 76.4
Cc01_g09520 Coffea canephora HOM05D005297 ORTHO05D006545 9.1e-75 283.9 172 83.1
ECA236G0310 Erigeron canadensis HOM05D005297 ORTHO05D006545 9.1e-75 283.9 178 76.4
Thecc.09G287800 Theobroma cacao HOM05D005297 ORTHO05D006545 2.0e-74 282.7 178 78.7
Sp6g04610 Schrenkiella parvula HOM05D005297 ORTHO05D006545 2.6e-74 282.3 178 78.7
Aa31LG6G1540 Aethionema arabicum HOM05D005297 ORTHO05D006545 4.5e-74 281.6 178 77.0
MELO3C003122.2 Cucumis melo HOM05D005297 ORTHO05D006545 4.5e-74 281.6 176 79.0
Lsat_1_v5_gn_8_117180 Lactuca sativa HOM05D005297 ORTHO05D006545 4.5e-74 281.6 180 76.7
Nn2g14072 Nelumbo nucifera HOM05D005297 ORTHO05D006545 5.9e-74 281.2 178 79.2
CsaV3_4G024870 Cucumis sativus L. HOM05D005297 ORTHO05D006545 1.3e-73 280.0 176 78.4
Rhsim13G0108000 Rhododendron simsii HOM05D005297 ORTHO05D006545 1.7e-73 279.6 178 78.1
BcaC04g21280 Brassica carinata HOM05D005297 ORTHO05D006545 2.2e-73 279.3 178 77.5
Haze_23424 Corylus avellana HOM05D005297 ORTHO05D006545 2.2e-73 279.3 160 85.0
Duzib150G0109 Durio zibethinus HOM05D005297 ORTHO05D006545 3.8e-73 278.5 178 77.5
Gorai.001G120900 Gossypium raimondii HOM05D005297 ORTHO05D006545 3.8e-73 278.5 178 77.5
AT4G04190 Arabidopsis thaliana HOM05D005297 ORTHO05D006545 5.0e-73 278.1 183 75.4
GSVIVG01036187001 Vitis vinifera HOM05D005297 ORTHO05D006545 5.0e-73 278.1 172 82.6
Aqoxy4G02831 Aquilegia oxysepala HOM05D005297 ORTHO05D006545 1.4e-72 276.6 178 77.0
Gohir.A07G108700 Gossypium hirsutum HOM05D005297 ORTHO05D006545 1.9e-72 276.2 178 77.0
Gohir.A07G108780 Gossypium hirsutum HOM05D005297 ORTHO05D006545 1.9e-72 276.2 178 77.0
Gohir.D07G112500 Gossypium hirsutum HOM05D005297 ORTHO05D006545 2.5e-72 275.8 178 76.4
Sp7g17550 Schrenkiella parvula HOM05D005297 ORTHO05D006545 4.2e-72 275.0 178 75.8
C09p33610 Brassica napus HOM05D002056 ORTHO05D002289 5.5e-72 274.6 175 77.7
CANSAT64G2769 Cannabis sativa HOM05D005297 ORTHO05D006545 7.2e-72 274.2 178 77.0
Dinv29444 Davidia involucrata HOM05D005297 ORTHO05D006545 7.2e-72 274.2 160 85.0
TAR623G0730 Trochodendron aralioides HOM05D005297 ORTHO05D006545 7.2e-72 274.2 178 77.0
A09p26430 Brassica napus HOM05D005297 ORTHO05D006545 2.7e-71 272.3 175 77.1
Hund18738 Selenicereus undatus HOM05D005297 ORTHO05D006545 3.6e-71 271.9 178 75.3
CiPaw.13G138500 Carya illinoinensis HOM05D005297 ORTHO05D006545 6.1e-71 271.2 201 71.1
Lsat_1_v5_gn_8_90380 Lactuca sativa HOM05D005297 ORTHO05D006545 6.1e-71 271.2 173 76.9
RcHm_v2.0_Chr5g0054901 Rosa chinensis HOM05D005297 ORTHO05D006545 1.8e-70 269.6 157 82.8
RcHm_v2.0_Chr5g0054661 Rosa chinensis HOM05D005297 ORTHO05D006545 2.3e-70 269.2 159 81.1
Hma1.2p1_0305F.1_g119460 Hydrangea macrophylla HOM05D005297 ORTHO05D006545 3.9e-70 268.5 154 85.7
vmacro03296 Vaccinium macrocarpon HOM05D005297 ORTHO05D006545 3.9e-70 268.5 181 73.5
AL6G47810 Arabidopsis lyrata HOM05D005297 ORTHO05D006545 5.1e-70 268.1 187 72.2
Prupe.6G124400 Prunus persica HOM05D005297 ORTHO05D006545 6.7e-70 267.7 159 81.1
BolC9t56195H Brassica oleracea HOM05D002056 ORTHO05D002289 8.8e-70 267.3 170 78.2
Medtr4g088775 Medicago truncatula HOM05D005297 ORTHO05D006545 1.5e-69 266.5 158 82.3
Ciclev10029400m.g Citrus clementina HOM05D005297 ORTHO05D006545 2.6e-69 265.8 178 74.7
Medtr0227s0030 Medicago truncatula HOM05D005297 ORTHO05D006545 2.6e-69 265.8 158 82.3
BraA09t38217Z Brassica rapa HOM05D005297 ORTHO05D006545 4.4e-69 265.0 170 77.6
MD11G1160800 Malus domestica HOM05D005297 ORTHO05D006545 4.4e-69 265.0 159 79.2
EL10Ac7g15793 Beta vulgaris HOM05D005297 ORTHO05D006545 5.7e-69 264.6 177 72.9
arahy.Tifrunner.gnm1.ann1.CT6H1M Arachis hypogaea HOM05D005297 ORTHO05D006545 9.7e-69 263.8 166 77.1
TWI79G0927 Tripterygium wilfordii HOM05D005297 ORTHO05D006545 9.7e-69 263.8 178 73.0
Lalb_Chr24g0395231 Lupinus albus HOM05D005297 ORTHO05D006545 1.3e-68 263.5 156 81.4
HPP92_006421 Vanilla planifolia HOM05D005297 ORTHO05D006545 1.7e-68 263.1 178 74.2
FAN21G1663 Fragaria x ananassa HOM05D005297 ORTHO05D006545 2.8e-68 262.3 157 80.9
MBI17_g16878_MAGBIO Magnolia biondii HOM05D005297 ORTHO05D006545 2.8e-68 262.3 178 71.9
TWI79G0105 Tripterygium wilfordii HOM05D005297 ORTHO05D006545 2.8e-68 262.3 178 73.0
Cpa.g.sc32.130 Carica papaya HOM05D005297 ORTHO05D006545 3.7e-68 261.9 172 75.0
FAN16G3468 Fragaria x ananassa HOM05D005297 ORTHO05D006545 8.2e-68 260.8 157 80.3
Glyma.12G183000 Glycine max HOM05D005297 ORTHO05D006545 8.2e-68 260.8 158 80.4
ATR0820G241 Amborella trichopoda HOM05D005297 ORTHO05D006545 1.8e-67 259.6 170 74.7
Lj2g0006626 Lotus japonicus HOM05D005297 ORTHO05D006545 1.8e-67 259.6 156 80.8
Phvul.005G125900 Phaseolus vulgaris HOM05D005297 ORTHO05D006545 2.4e-67 259.2 160 78.8
Psat2g130440 Pisum sativum HOM05D005297 ORTHO05D006545 3.1e-67 258.8 157 80.9
AUR62009792 Chenopodium quinoa HOM05D005297 ORTHO05D006545 4.1e-67 258.5 177 70.6
Glyma.13G318100 Glycine max HOM05D005297 ORTHO05D006545 4.1e-67 258.5 157 80.3
CSS0048581 Camellia sinensis var. sinensis HOM05D005297 ORTHO05D006545 7.0e-67 257.7 143 87.4
Sed0022012 Sechium edule HOM05D005297 ORTHO05D006545 7.0e-67 257.7 143 86.7
PSO384G0067 Papaver somniferum HOM05D005297 ORTHO05D006545 9.1e-67 257.3 175 71.4
Sc15g0007560 Simmondsia chinensis HOM05D005297 ORTHO05D006545 2.0e-66 256.1 176 71.6
FvH4_3g29610 Fragaria vesca HOM05D005297 ORTHO05D006545 3.5e-66 255.4 157 79.0
FAN11G1678 Fragaria x ananassa HOM05D005297 ORTHO05D006545 3.5e-66 255.4 157 79.0
PSO425G0036 Papaver somniferum HOM05D005297 ORTHO05D006545 3.5e-66 255.4 175 71.4
Zm00001eb084080 Zea mays HOM05D005297 ORTHO05D006545 5.9e-66 254.6 178 69.7
Sc21g0007210 Simmondsia chinensis HOM05D005297 ORTHO05D006545 1.0e-65 253.8 157 79.0
Os04g0410300 Oryza sativa ssp. japonica HOM05D005297 ORTHO05D006545 1.1e-64 250.4 178 70.2
Rhsim13G0108200 Rhododendron simsii HOM05D005297 ORTHO05D006545 1.1e-64 250.4 142 84.5
PSO170G0247 Papaver somniferum HOM05D005297 ORTHO05D006545 2.5e-64 249.2 172 69.8
Ca_09074_v3 Cicer arietinum L. HOM05D005297 ORTHO05D006545 5.5e-64 248.1 148 81.8
arahy.Tifrunner.gnm1.ann1.Q11QUE Arachis hypogaea HOM05D005297 ORTHO05D006545 7.2e-64 247.7 169 74.6
PSO801G0702 Papaver somniferum HOM05D005297 ORTHO05D006545 7.2e-64 247.7 175 68.6
Rhsim05G0032500 Rhododendron simsii HOM05D005297 ORTHO05D006545 7.2e-64 247.7 142 83.8
COL.COLO4_19936 Corchorus olitorius HOM05D005297 ORTHO05D006545 1.2e-63 246.9 137 89.1
SEGI_17822 Sequoiadendron giganteum HOM05D005297 ORTHO05D006545 1.6e-63 246.5 171 70.2
VMungo1080G0855 Vigna mungo HOM05D005392 ORTHO05D006709 1.6e-63 246.5 143 82.5
PSO339G0592 Papaver somniferum HOM05D005297 ORTHO05D006545 2.7e-63 245.7 175 68.0
TAR369G0691 Trochodendron aralioides HOM05D005297 ORTHO05D006545 8.8e-62 240.7 146 80.8
arahy.Tifrunner.gnm1.ann1.K2P72U Arachis hypogaea HOM05D005780 ORTHO05D006545 1.1e-61 240.4 138 84.1
Nitab4.5_0024933g0010 Nicotiana tabacum HOM05D005297 ORTHO05D006545 1.1e-61 240.4 141 85.1
Thhalv10005498m.g Eutrema salsugineum HOM05D005297 ORTHO05D006545 2.0e-61 239.6 166 72.9
PSO339G2689 Papaver somniferum HOM05D005297 ORTHO05D006545 8.2e-60 234.2 156 72.4
PSO782G5408 Papaver somniferum HOM05D005297 ORTHO05D006545 1.8e-59 233.0 172 67.4
Rhsim13G0107700 Rhododendron simsii HOM05D005297 ORTHO05D006545 4.5e-58 228.4 178 68.5
Os01g0191000 Oryza sativa ssp. japonica HOM05D005297 ORTHO05D006545 1.3e-57 226.9 166 69.3
AUR62039239 Chenopodium quinoa HOM05D005297 ORTHO05D006545 2.2e-57 226.1 176 65.9
Medtr4g073910 Medicago truncatula HOM05D005297 ORTHO05D006545 5.2e-54 214.9 135 81.5
Actinidia24196 Actinidia chinensis HOM05D005392 ORTHO05D006709 2.2e-52 209.5 182 61.5
CSS0004713 Camellia sinensis var. sinensis HOM05D005297 ORTHO05D006545 8.3e-52 207.6 156 68.6
Pp3c27_2700 Physcomitrium patens HOM05D005297 ORTHO05D006545 7.0e-51 204.5 172 56.4
Lj2A987T34 Lonicera japonica HOM05D005297 ORTHO05D006545 1.2e-47 193.7 109 87.2
Mapoly0068s0054 Marchantia polymorpha HOM05D005297 ORTHO05D006545 1.5e-45 186.8 174 52.3
arahy.Tifrunner.gnm1.ann1.S3X3J8 Arachis hypogaea HOM05D005297 ORTHO05D006545 3.4e-45 185.7 115 78.3
Duzib168G0206 Durio zibethinus HOM05D005297 ORTHO05D006545 2.2e-44 183.0 115 80.0
MD03G1139300 Malus domestica HOM05D005297 ORTHO05D006545 1.8e-43 179.9 143 65.0
CDE11G0319 Ceratophyllum demersum HOM05D005297 ORTHO05D006545 5.4e-43 178.3 115 74.8
TPR.G2691 Trifolium pratense HOM05D005297 ORTHO05D006545 6.6e-41 171.4 113 77.0
CBR_g82609 Chara braunii HOM05D005297 ORTHO05D006545 1.1e-40 170.6 152 55.9
PSO782G3247 Papaver somniferum HOM05D005297 ORTHO05D006545 7.2e-40 167.9 128 64.8
Ca_05140_v3 Cicer arietinum L. HOM05D005297 ORTHO05D012218 2.2e-36 156.4 100 77.0
SHI11151 Sapria himalayana HOM05D005297 ORTHO05D000023 2.4e-35 152.9 135 60.0
Oeu050204.1 Olea europaea HOM05D005297 ORTHO05D006545 1.3e-33 147.1 188 50.0
Gorai.006G055300 Gossypium raimondii HOM05D005297 ORTHO05D006545 1.9e-32 143.3 75 88.0
DCAR_001100 Daucus carota HOM05D005297 ORTHO05D006545 2.8e-31 139.4 130 56.9
Gorai.003G076100 Gossypium raimondii HOM05D005297 ORTHO05D006545 2.8e-31 139.4 127 57.5
arahy.Tifrunner.gnm1.ann1.LDL4WN Arachis hypogaea HOM05D005297 ORTHO05D006545 2.3e-30 136.3 100 68.0
Gorai.003G055900 Gossypium raimondii HOM05D005297 ORTHO05D006545 5.2e-30 135.2 117 61.5
Gorai.005G178100 Gossypium raimondii HOM05D005297 ORTHO05D006545 1.5e-29 133.7 75 82.7
Gohir.D06G133032 Gossypium hirsutum HOM05D005297 ORTHO05D006545 4.4e-29 132.1 68 89.7
CSS0043339 Camellia sinensis var. sinensis HOM05D005297 ORTHO05D006545 3.2e-27 125.9 156 48.1
Gohir.D09G053026 Gossypium hirsutum HOM05D005297 ORTHO05D006545 4.1e-27 125.6 75 80.0
Oeu046141.1 Olea europaea HOM05D005297 ORTHO05D006545 5.4e-27 125.2 85 75.3
RcHm_v2.0_Chr5g0054771 Rosa chinensis HOM05D005297 ORTHO05D006545 1.2e-21 107.5 118 55.9
QL02p014117 Quercus lobata HOM05D005297 ORTHO05D006545 4.4e-21 105.5 64 81.2
Gohir.D02G158550 Gossypium hirsutum HOM05D005297 ORTHO05D006545 4.1e-19 99.0 75 66.7
C02p40370 Brassica napus HOM05D000848 ORTHO05D000007 4.6e-18 95.5 66 71.2
TPR.G32973 Trifolium pratense HOM05D005297 ORTHO05D006545 3.3e-16 89.4 50 82.0
BolC2t10071H Brassica oleracea HOM05D005297 ORTHO05D000007 2.8e-15 86.3 58 74.1
Psat2g121320 Pisum sativum HOM05D005297 ORTHO05D006545 8.1e-15 84.7 58 67.2
PSO541G0924 Papaver somniferum HOM05D005117 ORTHO05D005956 3.1e-06 56.2 33 78.8


User provided reference genes

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