Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold147G36344 Striga asiatica HOM05D006008 ORTHO05D007334 6.5e-205 718.8 860 100.0
Migut.A00359 Erythranthe guttata HOM05D006008 ORTHO05D007334 6.3e-91 340.1 821 81.0
SalBow4G1429 Salvia bowleyana HOM05D006008 ORTHO05D007334 9.5e-87 326.2 844 76.7
Actinidia23109 Actinidia chinensis HOM05D006008 ORTHO05D007334 1.5e-71 275.8 244 59.8
Dinv08184 Davidia involucrata HOM05D006008 ORTHO05D007334 1.6e-70 272.3 855 75.0
Atru.chr7.2558 Acer truncatum HOM05D006008 ORTHO05D007334 9.2e-66 256.5 244 54.1
DCAR_022863 Daucus carota HOM05D006008 ORTHO05D007334 6.0e-65 253.8 244 54.1
Potri.006G264800 Populus trichocarpa HOM05D006008 ORTHO05D007334 8.6e-64 250.0 244 52.0
Sc09g0010690 Simmondsia chinensis HOM05D006008 ORTHO05D007334 1.9e-63 248.8 244 53.7
CSS0033722 Camellia sinensis var. sinensis HOM05D006008 ORTHO05D007334 9.5e-63 246.5 245 55.1
vmacro05220 Vaccinium macrocarpon HOM05D006008 ORTHO05D007334 1.2e-62 246.1 244 54.5
Sabra06G0206900 Salix brachista HOM05D006008 ORTHO05D007334 4.7e-62 244.2 245 52.2
Cfa013044 Carpinus fangiana HOM05D006008 ORTHO05D007334 6.2e-62 243.8 244 54.9
Manes.08G047700 Manihot esculenta HOM05D006008 ORTHO05D007334 1.8e-61 242.3 247 51.8
Rhsim07G0155900 Rhododendron simsii HOM05D006008 ORTHO05D007334 2.0e-60 238.8 244 54.1
Haze_21405 Corylus avellana HOM05D006008 ORTHO05D007334 2.6e-60 238.4 232 56.0
TAR362G1189 Trochodendron aralioides HOM05D006008 ORTHO05D007334 3.4e-60 238.0 234 54.7
CANSAT54G1994 Cannabis sativa HOM05D006008 ORTHO05D007334 4.4e-60 237.7 210 57.1
Cpa.g.sc148.18 Carica papaya HOM05D006008 ORTHO05D007334 4.4e-60 237.7 246 50.8
arahy.Tifrunner.gnm1.ann1.HZWF25 Arachis hypogaea HOM05D006008 ORTHO05D007334 1.7e-59 235.7 209 55.0
ECA234G3283 Erigeron canadensis HOM05D006008 ORTHO05D007334 2.9e-59 235.0 195 62.6
Nitab4.5_0000147g0080 Nicotiana tabacum HOM05D006008 ORTHO05D007334 3.7e-59 234.6 261 50.2
AUR62041936 Chenopodium quinoa HOM05D006008 ORTHO05D007334 1.4e-58 232.6 197 58.4
PGSC0003DMG400027232 Solanum tuberosum HOM05D006008 ORTHO05D007334 1.4e-58 232.6 782 77.6
Lj7P735T18 Lonicera japonica HOM05D006008 ORTHO05D007334 4.1e-58 231.1 173 64.7
TWI63G1661 Tripterygium wilfordii HOM05D006008 ORTHO05D007334 7.1e-58 230.3 247 51.0
RcHm_v2.0_Chr6g0299351 Rosa chinensis HOM05D006008 ORTHO05D007334 9.2e-58 229.9 199 56.8
PSO384G1678 Papaver somniferum HOM05D006008 ORTHO05D007334 1.6e-57 229.2 238 50.8
Sopen04g007490 Solanum pennellii HOM05D006008 ORTHO05D007334 1.6e-57 229.2 765 78.6
Duzib187G0883 Durio zibethinus HOM05D006008 ORTHO05D007334 6.0e-57 227.3 235 52.8
Peaxi162Scf01286g00125 Petunia axillaris HOM05D006008 ORTHO05D007334 6.0e-57 227.3 890 69.8
MSTRG.11782 Avicennia marina HOM05D006008 ORTHO05D007334 3.0e-56 224.9 844 74.5
Lsat_1_v5_gn_2_36140 Lactuca sativa HOM05D006008 ORTHO05D007334 3.0e-56 224.9 244 50.4
Thecc.09G015100 Theobroma cacao HOM05D006008 ORTHO05D007334 3.0e-56 224.9 244 50.4
CANSAT21G2303 Cannabis sativa HOM05D006008 ORTHO05D007334 5.1e-56 224.2 206 54.9
CANSAT56G1562 Cannabis sativa HOM05D006008 ORTHO05D007334 5.1e-56 224.2 238 50.0
Solyc04g015440.4 Solanum lycopersicum HOM05D006008 ORTHO05D007334 1.1e-55 223.0 765 67.7
arahy.Tifrunner.gnm1.ann1.E59C1E Arachis hypogaea HOM05D006008 ORTHO05D007334 1.9e-55 222.2 197 56.3
CANSAT21G0760 Cannabis sativa HOM05D006008 ORTHO05D007334 3.3e-55 221.5 224 54.5
CANSAT80G0905 Cannabis sativa HOM05D006008 ORTHO05D007334 4.3e-55 221.1 207 53.6
Gohir.D05G062300 Gossypium hirsutum HOM05D006008 ORTHO05D007334 5.6e-55 220.7 246 51.2
Gorai.009G063400 Gossypium raimondii HOM05D006008 ORTHO05D007334 7.3e-55 220.3 246 51.2
Hund20025 Selenicereus undatus HOM05D006008 ORTHO05D007334 9.6e-55 219.9 216 52.3
VMungo1309G2388 Vigna mungo HOM05D006008 ORTHO05D007334 2.1e-54 218.8 244 47.5
CSS0011965 Camellia sinensis var. sinensis HOM05D006008 ORTHO05D007334 3.6e-54 218.0 144 72.2
CSS0032373 Camellia sinensis var. sinensis HOM05D006008 ORTHO05D007334 3.6e-54 218.0 144 72.2
Gohir.A05G060100 Gossypium hirsutum HOM05D006008 ORTHO05D007334 4.7e-54 217.6 246 50.4
Aqoxy7G02519 Aquilegia oxysepala HOM05D006008 ORTHO05D007334 6.2e-54 217.2 237 51.9
CSS0025914 Camellia sinensis var. sinensis HOM05D006008 ORTHO05D007334 8.1e-54 216.9 174 65.5
CAN.G676.42 Capsicum annuum HOM05D006008 ORTHO05D007334 8.1e-54 216.9 156 66.7
Glyma.06G061000 Glycine max HOM05D006008 ORTHO05D007334 8.1e-54 216.9 244 47.5
QL02p018792 Quercus lobata HOM05D006008 ORTHO05D007334 8.1e-54 216.9 173 62.4
arahy.Tifrunner.gnm1.ann1.6M8E1A Arachis hypogaea HOM05D006008 ORTHO05D007334 1.1e-53 216.5 183 57.9
MD08G1055800 Malus domestica HOM05D006008 ORTHO05D007334 1.1e-53 216.5 231 51.9
CANSAT54G0183 Cannabis sativa HOM05D006008 ORTHO05D007334 1.8e-53 215.7 241 48.5
MELO3C032315.2 Cucumis melo HOM05D006008 ORTHO05D007334 1.8e-53 215.7 190 54.2
PGR142G1849 Punica granatum HOM05D006008 ORTHO05D007334 2.4e-53 215.3 247 49.8
Phvul.009G086500 Phaseolus vulgaris HOM05D006008 ORTHO05D007334 3.1e-53 214.9 244 47.5
ClCG05G016190 Citrullus lanatus HOM05D006008 ORTHO05D007334 4.0e-53 214.5 189 54.5
FvH4_2g41180 Fragaria vesca HOM05D006008 ORTHO05D007334 8.9e-53 213.4 185 55.7
FAN27G1628 Fragaria x ananassa HOM05D006008 ORTHO05D007334 1.5e-52 212.6 210 51.9
FAN20G2406 Fragaria x ananassa HOM05D006008 ORTHO05D007334 2.0e-52 212.2 210 51.9
FAN15G1576 Fragaria x ananassa HOM05D006008 ORTHO05D007334 5.8e-52 210.7 185 55.1
Ah.04g163370 Amaranthus hybridus HOM05D002153 ORTHO05D002137 2.9e-51 208.4 192 53.6
arahy.Tifrunner.gnm1.ann1.83E5X5 Arachis hypogaea HOM05D006008 ORTHO05D007334 6.4e-51 207.2 182 56.0
CANSAT80G2648 Cannabis sativa HOM05D006008 ORTHO05D007334 2.4e-50 205.3 207 50.7
Psat5g033520 Pisum sativum HOM05D006008 ORTHO05D007334 9.3e-50 203.4 246 46.7
Lj1g0008194 Lotus japonicus HOM05D006008 ORTHO05D007334 2.1e-49 202.2 226 47.8
BraA03t15143Z Brassica rapa HOM05D006008 ORTHO05D007334 4.6e-49 201.1 211 51.2
Lalb_Chr23g0268201 Lupinus albus HOM05D006008 ORTHO05D007334 4.6e-49 201.1 194 52.6
ATR0580G290 Amborella trichopoda HOM05D006008 ORTHO05D007334 7.8e-49 200.3 205 49.3
Sed0007713 Sechium edule HOM05D006008 ORTHO05D007334 7.8e-49 200.3 189 52.4
Prupe.1G394600 Prunus persica HOM05D006008 ORTHO05D007334 3.0e-48 198.4 210 51.9
Ca_15782_v3 Cicer arietinum L. HOM05D006008 ORTHO05D007334 1.1e-47 196.4 250 44.4
Oeu001622.3 Olea europaea HOM05D006008 ORTHO05D007334 1.1e-47 196.4 712 81.7
TPR.G1871 Trifolium pratense HOM05D006008 ORTHO05D007334 1.1e-47 196.4 249 43.8
Medtr3g105900 Medicago truncatula HOM05D006008 ORTHO05D007334 1.6e-46 192.6 254 43.7
CSS0030467 Camellia sinensis var. sinensis HOM05D006008 ORTHO05D007334 4.8e-46 191.0 180 56.1
CSS0046362 Camellia sinensis var. sinensis HOM05D006008 ORTHO05D007334 4.8e-46 191.0 195 54.4
Cc08_g07210 Coffea canephora HOM05D006008 ORTHO05D007334 1.4e-45 189.5 218 49.5
THA.LOC104803618 Tarenaya hassleriana HOM05D006008 ORTHO05D007334 1.4e-45 189.5 206 48.1
Nn7g36097 Nelumbo nucifera HOM05D006008 ORTHO05D007334 2.4e-45 188.7 196 52.0
CSS0002096 Camellia sinensis var. sinensis HOM05D006008 ORTHO05D007334 9.0e-45 186.8 195 54.4
CSS0018849 Camellia sinensis var. sinensis HOM05D006008 ORTHO05D007334 2.6e-44 185.3 191 55.0
HanXRQChr09g0270581 Helianthus annuus HOM05D006008 ORTHO05D007334 3.4e-44 184.9 139 64.7
Nitab4.5_0001663g0180 Nicotiana tabacum HOM05D006008 ORTHO05D007334 1.3e-43 183.0 717 80.9
A03p61020 Brassica napus HOM05D006008 ORTHO05D007334 8.4e-43 180.3 197 49.2
Carub.0007s0870 Capsella rubella HOM05D006008 ORTHO05D007334 8.4e-43 180.3 195 49.2
GSVIVG01035975001 Vitis vinifera HOM05D006008 ORTHO05D007334 8.4e-43 180.3 201 49.3
C07p58920 Brassica napus HOM05D006008 ORTHO05D007334 1.6e-41 176.0 194 49.0
BolC7t46339H Brassica oleracea HOM05D006008 ORTHO05D007334 1.6e-41 176.0 194 49.0
BcaNung01494 Brassica carinata HOM05D006008 ORTHO05D007334 7.8e-41 173.7 193 50.3
CDE02G3851 Ceratophyllum demersum HOM05D006008 ORTHO05D007334 7.8e-41 173.7 212 45.8
MBI15_g18236_MAGBIO Magnolia biondii HOM05D006008 ORTHO05D007334 7.8e-41 173.7 184 50.5
Aa31LG2G18380 Aethionema arabicum HOM05D006008 ORTHO05D007334 1.0e-40 173.3 178 49.4
AL7G20130 Arabidopsis lyrata HOM05D006008 ORTHO05D007334 6.6e-40 170.6 204 47.1
EL10Ac4g08536 Beta vulgaris HOM05D006008 ORTHO05D007334 1.1e-39 169.9 159 52.2
CARHR239780 Cardamine hirsuta HOM05D006008 ORTHO05D007334 2.5e-39 168.7 183 48.1
CiPaw.08G005700 Carya illinoinensis HOM05D006008 ORTHO05D007334 9.6e-39 166.8 115 68.7
AT4G31850 Arabidopsis thaliana HOM05D006008 ORTHO05D007334 1.3e-38 166.4 168 50.6
Thhalv10024264m.g Eutrema salsugineum HOM05D006008 ORTHO05D007334 4.8e-38 164.5 216 45.4
Sp7g29660 Schrenkiella parvula HOM05D006008 ORTHO05D007334 4.5e-36 157.9 189 48.7
CSS0013958 Camellia sinensis var. sinensis HOM05D006008 ORTHO05D007334 7.6e-36 157.1 125 64.0
A01p06430 Brassica napus HOM05D006008 ORTHO05D007334 2.9e-35 155.2 188 46.3
Eucgr.C01897 Eucalyptus grandis HOM05D006008 ORTHO05D007334 4.9e-35 154.5 102 71.6
BcaC09g51977 Brassica carinata HOM05D006008 ORTHO05D007334 1.1e-34 153.3 188 46.3
C01p07070 Brassica napus HOM05D006008 ORTHO05D007334 1.9e-34 152.5 187 46.5
BraA01t00604Z Brassica rapa HOM05D006008 ORTHO05D007334 4.2e-34 151.4 189 45.0
Nn7g37618 Nelumbo nucifera HOM05D006008 ORTHO05D007334 4.2e-34 151.4 164 47.6
COL.COLO4_18956 Corchorus olitorius HOM05D006008 ORTHO05D007334 9.3e-34 150.2 155 47.7
BcaNung03118 Brassica carinata HOM05D006008 ORTHO05D007334 1.3e-32 146.4 188 43.6
Ciclev10007356m.g Citrus clementina HOM05D006008 ORTHO05D007334 1.3e-32 146.4 102 65.7
CsaV3_4G036480 Cucumis sativus L. HOM05D006008 ORTHO05D007334 1.8e-32 146.0 150 47.3
CSS0039067 Camellia sinensis var. sinensis HOM05D006008 ORTHO05D007334 1.5e-31 142.9 174 50.0
AUR62041257 Chenopodium quinoa HOM05D006008 ORTHO05D007334 3.7e-30 138.3 128 54.7
FAN20G1003 Fragaria x ananassa HOM05D006008 ORTHO05D007334 1.4e-29 136.3 152 46.1
CSS0031354 Camellia sinensis var. sinensis HOM05D006008 ORTHO05D007334 4.0e-29 134.8 125 51.2
Lalb_Chr23g0268191 Lupinus albus HOM05D006008 ORTHO05D007334 4.0e-29 134.8 156 44.2
Glyma.04G060500 Glycine max HOM05D006008 ORTHO05D007334 4.5e-28 131.3 156 42.9
Os10g0421800 Oryza sativa ssp. japonica HOM05D006008 ORTHO05D007334 1.0e-27 130.2 132 48.5
Zm00001eb393290 Zea mays HOM05D006008 ORTHO05D007334 1.0e-27 130.2 211 37.4
SEGI_41266 Sequoiadendron giganteum HOM05D006008 ORTHO05D007334 1.3e-27 129.8 174 42.0
ATR0180G020 Amborella trichopoda HOM05D006008 ORTHO05D007334 6.5e-27 127.5 157 41.4
CANSAT21G2219 Cannabis sativa HOM05D006008 ORTHO05D007334 3.5e-25 121.7 140 48.6
BolC1t00699H Brassica oleracea HOM05D006008 ORTHO05D007334 7.9e-25 120.6 185 41.1
Nn7g36096 Nelumbo nucifera HOM05D006008 ORTHO05D007334 6.7e-24 117.5 148 41.9
SEGI_02316 Sequoiadendron giganteum HOM05D006008 ORTHO05D007334 9.3e-18 97.1 131 38.9
HPP92_017173 Vanilla planifolia HOM05D006008 ORTHO05D007334 3.0e-16 92.0 147 36.7
BcaNung03117 Brassica carinata HOM05D006008 ORTHO05D007334 4.3e-15 88.2 120 45.8
CsaV3_1G005400 Cucumis sativus L. HOM05D002453 ORTHO05D002107 8.8e-08 63.9 149 27.5
THA.LOC104807228 Tarenaya hassleriana HOM05D003056 ORTHO05D003422 1.5e-07 63.2 111 30.6
Lsat_1_v5_gn_1_13300 Lactuca sativa HOM05D002453 ORTHO05D002107 2.5e-07 62.4 157 28.0
HanXRQChr16g0518411 Helianthus annuus HOM05D002453 ORTHO05D002107 3.3e-07 62.0 182 25.3
Lj5C111T12 Lonicera japonica HOM05D002453 ORTHO05D002107 3.3e-07 62.0 152 28.9
Nitab4.5_0005983g0010 Nicotiana tabacum HOM05D002453 ORTHO05D002107 5.7e-07 61.2 141 25.5
Prupe.5G192300 Prunus persica HOM05D002453 ORTHO05D002107 5.7e-07 61.2 158 26.6
RcHm_v2.0_Chr7g0181161 Rosa chinensis HOM05D002453 ORTHO05D002107 5.7e-07 61.2 148 27.7
Nitab4.5_0000026g0050 Nicotiana tabacum HOM05D002453 ORTHO05D002107 9.7e-07 60.5 141 26.2
BcaC08g46987 Brassica carinata HOM05D002453 ORTHO05D002107 1.3e-06 60.1 151 24.5
ClCG04G012320 Citrullus lanatus HOM05D002453 ORTHO05D002107 1.7e-06 59.7 149 26.8
Ah.11g048530 Amaranthus hybridus HOM05D002453 ORTHO05D002107 2.2e-06 59.3 152 25.0
PGR083G1347 Punica granatum HOM05D004255 ORTHO05D004815 2.2e-06 59.3 155 26.5
CDE02G4775 Ceratophyllum demersum HOM05D000424 ORTHO05D002854 2.8e-06 58.9 170 28.8
HPP92_026434 Vanilla planifolia HOM05D002453 ORTHO05D002107 2.8e-06 58.9 140 27.9
GSVIVG01031321001 Vitis vinifera HOM05D007830 ORTHO05D009947 2.8e-06 58.9 151 26.5
QL10p016708 Quercus lobata HOM05D002453 ORTHO05D002107 3.7e-06 58.5 152 27.0
Sed0001810 Sechium edule HOM05D002453 ORTHO05D002107 6.3e-06 57.8 149 24.8
Sed0019268 Sechium edule HOM05D002453 ORTHO05D002107 6.3e-06 57.8 149 24.8
AUR62021699 Chenopodium quinoa HOM05D002453 ORTHO05D002107 8.2e-06 57.4 146 26.7
THA.LOC104819538 Tarenaya hassleriana HOM05D003056 ORTHO05D003422 8.2e-06 57.4 98 30.6


User provided reference genes

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