Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold147G36341 Striga asiatica HOM05D004800 ORTHO05D005842 1.3e-112 409.8 214 100.0
MSTRG.25830 Avicennia marina HOM05D004800 ORTHO05D005842 2.5e-84 315.8 215 75.8
SalBow4G3208 Salvia bowleyana HOM05D004800 ORTHO05D005842 1.8e-82 309.7 217 74.7
Migut.A00358 Erythranthe guttata HOM05D004800 ORTHO05D005842 8.8e-82 307.4 217 74.7
Oeu001621.3 Olea europaea HOM05D004800 ORTHO05D005842 1.7e-80 303.1 214 71.5
Oeu009650.1 Olea europaea HOM05D004800 ORTHO05D005842 2.6e-78 295.8 214 71.0
unitig_749.g13819 Utricularia gibba HOM05D004800 ORTHO05D005842 4.8e-72 275.0 217 67.3
Dinv13413 Davidia involucrata HOM05D004800 ORTHO05D005842 7.2e-68 261.2 203 65.0
CSS0020729 Camellia sinensis var. sinensis HOM05D004800 ORTHO05D005842 3.6e-67 258.8 209 63.6
CSS0041988 Camellia sinensis var. sinensis HOM05D004800 ORTHO05D005842 3.6e-67 258.8 209 63.6
Dinv08182 Davidia involucrata HOM05D004800 ORTHO05D005842 6.7e-66 254.6 203 64.0
Nitab4.5_0010613g0010 Nicotiana tabacum HOM05D004800 ORTHO05D005842 6.7e-66 254.6 223 62.8
Lj7A735T34 Lonicera japonica HOM05D004800 ORTHO05D005842 8.8e-66 254.2 202 61.9
Hma1.2p1_0389F.1_g142470 Hydrangea macrophylla HOM05D004800 ORTHO05D005842 3.3e-65 252.3 208 62.0
Solyc07g008750.4 Solanum lycopersicum HOM05D004800 ORTHO05D005842 4.8e-64 248.4 214 63.1
DCAR_022862 Daucus carota HOM05D004800 ORTHO05D005842 1.1e-63 247.3 196 63.3
Sopen07g004690 Solanum pennellii HOM05D004800 ORTHO05D005842 5.3e-63 245.0 200 65.0
PGSC0003DMG401028727 Solanum tuberosum HOM05D004800 ORTHO05D005842 5.3e-63 245.0 213 63.4
Duzib168G1619 Durio zibethinus HOM05D004800 ORTHO05D005842 7.0e-63 244.6 203 61.6
CAN.G333.3 Capsicum annuum HOM05D004800 ORTHO05D005842 1.2e-62 243.8 206 64.1
Cc08_g07200 Coffea canephora HOM05D004800 ORTHO05D005842 1.6e-62 243.4 209 59.8
COL.COLO4_18955 Corchorus olitorius HOM05D004800 ORTHO05D005842 4.5e-62 241.9 205 62.0
Peaxi162Scf00006g00249 Petunia axillaris HOM05D004800 ORTHO05D005842 5.9e-62 241.5 209 60.3
Gorai.009G063300 Gossypium raimondii HOM05D004800 ORTHO05D005842 1.3e-61 240.4 209 58.9
CSS0021373 Camellia sinensis var. sinensis HOM05D004800 ORTHO05D005842 2.9e-61 239.2 187 65.8
Rhsim07G0165700 Rhododendron simsii HOM05D004800 ORTHO05D005842 3.8e-61 238.8 196 60.2
Gohir.D05G062200 Gossypium hirsutum HOM05D004800 ORTHO05D005842 8.5e-61 237.7 209 57.9
TAR625G0162 Trochodendron aralioides HOM05D004800 ORTHO05D005842 1.1e-60 237.3 206 60.7
Gohir.A05G060000 Gossypium hirsutum HOM05D004800 ORTHO05D005842 3.2e-60 235.7 209 57.9
TAR625G0311 Trochodendron aralioides HOM05D004800 ORTHO05D005842 5.5e-60 235.0 206 60.2
Lsat_1_v5_gn_5_49760 Lactuca sativa HOM05D004800 ORTHO05D005842 7.2e-60 234.6 197 61.9
Thecc.09G015200 Theobroma cacao HOM05D004800 ORTHO05D005842 1.2e-59 233.8 200 60.0
Ciclev10009140m.g Citrus clementina HOM05D004800 ORTHO05D005842 2.7e-59 232.6 202 58.9
vmacro05151 Vaccinium macrocarpon HOM05D004800 ORTHO05D005842 3.6e-59 232.3 186 62.9
Actinidia14132 Actinidia chinensis HOM05D004800 ORTHO05D005842 8.0e-59 231.1 214 58.9
Cpa.g.sc148.17 Carica papaya HOM05D004800 ORTHO05D005842 8.0e-59 231.1 200 61.0
Manes.16G130200 Manihot esculenta HOM05D004800 ORTHO05D005842 1.0e-58 230.7 200 59.0
Haze_21408 Corylus avellana HOM05D004800 ORTHO05D005842 3.0e-58 229.2 208 58.2
Cfa013047 Carpinus fangiana HOM05D004800 ORTHO05D005842 5.2e-58 228.4 203 58.1
Prupe.1G394400 Prunus persica HOM05D004800 ORTHO05D005842 5.2e-58 228.4 199 57.3
RcHm_v2.0_Chr6g0299361 Rosa chinensis HOM05D004800 ORTHO05D005842 1.5e-57 226.9 215 55.8
HanXRQChr13g0411011 Helianthus annuus HOM05D004800 ORTHO05D005842 2.0e-57 226.5 203 56.7
FAN27G0477 Fragaria x ananassa HOM05D004800 ORTHO05D005842 2.8e-56 222.6 209 55.5
Sed0002840 Sechium edule HOM05D004800 ORTHO05D005842 6.3e-56 221.5 201 54.2
TWI34G0615 Tripterygium wilfordii HOM05D004800 ORTHO05D005842 8.3e-56 221.1 202 57.9
FAN20G2958 Fragaria x ananassa HOM05D004800 ORTHO05D005842 1.4e-55 220.3 209 55.0
Lj1g0022737 Lotus japonicus HOM05D004800 ORTHO05D005842 1.4e-55 220.3 205 55.1
Hund02986 Selenicereus undatus HOM05D004800 ORTHO05D005842 1.4e-55 220.3 200 57.0
FvH4_2g41170 Fragaria vesca HOM05D004800 ORTHO05D005842 2.4e-55 219.5 209 54.1
A06p35840 Brassica napus HOM05D004800 ORTHO05D005842 3.1e-55 219.2 210 55.7
BraA06t26509Z Brassica rapa HOM05D004800 ORTHO05D005842 3.1e-55 219.2 210 55.7
CANSAT25G3039 Cannabis sativa HOM05D004800 ORTHO05D005842 4.1e-55 218.8 208 55.3
Potri.006G264700 Populus trichocarpa HOM05D004800 ORTHO05D005842 7.0e-55 218.0 204 56.4
BcaNung03198 Brassica carinata HOM05D004800 ORTHO05D005842 1.2e-54 217.2 210 55.2
AUR62024801 Chenopodium quinoa HOM05D004800 ORTHO05D005842 1.6e-54 216.9 206 55.8
BcaNung02298 Brassica carinata HOM05D004800 ORTHO05D005842 2.0e-54 216.5 213 54.5
Manes.03G008100 Manihot esculenta HOM05D004800 ORTHO05D005842 2.0e-54 216.5 200 54.5
AUR62032420 Chenopodium quinoa HOM05D004800 ORTHO05D005842 3.5e-54 215.7 206 54.9
QL02p018802 Quercus lobata HOM05D004800 ORTHO05D005842 4.5e-54 215.3 203 55.7
THA.LOC104814986 Tarenaya hassleriana HOM05D004800 ORTHO05D005842 5.9e-54 214.9 208 54.3
Sp2g22450 Schrenkiella parvula HOM05D004800 ORTHO05D005842 1.7e-53 213.4 207 53.1
GSVIVG01035974001 Vitis vinifera HOM05D004800 ORTHO05D005842 5.0e-53 211.8 178 59.6
VMungo1309G1055 Vigna mungo HOM05D004800 ORTHO05D005842 6.5e-53 211.5 202 53.0
CiPaw.08G005800 Carya illinoinensis HOM05D004800 ORTHO05D005842 8.5e-53 211.1 203 52.7
Sc09g0010680 Simmondsia chinensis HOM05D004800 ORTHO05D005842 8.5e-53 211.1 194 54.6
Actinidia23108 Actinidia chinensis HOM05D004800 ORTHO05D005842 1.9e-52 209.9 211 55.0
Sabra06G0206800 Salix brachista HOM05D004800 ORTHO05D005842 2.5e-52 209.5 202 54.5
TWI32G1317 Tripterygium wilfordii HOM05D004800 ORTHO05D005842 4.2e-52 208.8 201 55.2
Atru.chr7.2559 Acer truncatum HOM05D004800 ORTHO05D005842 5.5e-52 208.4 200 53.5
Psat5g033480 Pisum sativum HOM05D004800 ORTHO05D005842 5.5e-52 208.4 201 52.7
EL10Ac2g02494 Beta vulgaris HOM05D004800 ORTHO05D005842 7.2e-52 208.0 206 54.4
TPR.G1887 Trifolium pratense HOM05D004800 ORTHO05D005842 1.6e-51 206.8 199 52.3
Phvul.009G086600 Phaseolus vulgaris HOM05D004800 ORTHO05D005842 2.1e-51 206.5 201 52.2
C07p42740 Brassica napus HOM05D004800 ORTHO05D005842 3.6e-51 205.7 236 49.6
AT5G25080 Arabidopsis thaliana HOM05D004800 ORTHO05D005842 4.7e-51 205.3 199 52.3
BcaNung06718 Brassica carinata HOM05D004800 ORTHO05D005842 4.7e-51 205.3 183 57.9
PSO384G2235 Papaver somniferum HOM05D004800 ORTHO05D005842 8.0e-51 204.5 206 51.5
Sabra18G0021000 Salix brachista HOM05D004800 ORTHO05D005842 1.4e-50 203.8 206 53.4
BolC7t44804H Brassica oleracea HOM05D004800 ORTHO05D005842 1.8e-50 203.4 236 49.2
PGR044G1902 Punica granatum HOM05D004800 ORTHO05D005842 2.3e-50 203.0 208 51.9
PSO339G1021 Papaver somniferum HOM05D004800 ORTHO05D005842 5.2e-50 201.8 203 51.7
Eucgr.L02918 Eucalyptus grandis HOM05D004800 ORTHO05D005842 1.2e-49 200.7 203 51.2
Aqoxy7G03382 Aquilegia oxysepala HOM05D004800 ORTHO05D005842 4.4e-49 198.7 207 54.1
Ca_15781_v3 Cicer arietinum L. HOM05D004800 ORTHO05D005842 4.4e-49 198.7 208 50.0
Eucgr.C02606 Eucalyptus grandis HOM05D004800 ORTHO05D005842 4.4e-49 198.7 200 51.5
BraA09t36276Z Brassica rapa HOM05D004800 ORTHO05D005842 4.9e-48 195.3 208 51.9
MELO3C016954.2 Cucumis melo HOM05D004800 ORTHO05D005842 6.3e-48 194.9 203 49.3
CsaV3_4G036490 Cucumis sativus L. HOM05D004800 ORTHO05D005842 8.3e-48 194.5 203 49.3
BcaC04g23570 Brassica carinata HOM05D004800 ORTHO05D005842 1.1e-47 194.1 198 52.0
C09p07000 Brassica napus HOM05D004800 ORTHO05D005842 1.1e-47 194.1 198 52.0
Medtr3g105925 Medicago truncatula HOM05D004800 ORTHO05D005842 3.1e-47 192.6 210 49.5
A09p06310 Brassica napus HOM05D004800 ORTHO05D005842 4.1e-47 192.2 208 51.4
MD08G1055900 Malus domestica HOM05D004800 ORTHO05D005842 4.1e-47 192.2 199 48.7
Carub.0006s2291 Capsella rubella HOM05D004800 ORTHO05D005842 7.0e-47 191.4 199 50.3
AL6G36710 Arabidopsis lyrata HOM05D004800 ORTHO05D005842 9.2e-47 191.0 216 48.6
Thhalv10004902m.g Eutrema salsugineum HOM05D004800 ORTHO05D005842 9.2e-47 191.0 211 50.2
HPP92_017174 Vanilla planifolia HOM05D004800 ORTHO05D005842 2.0e-46 189.9 197 49.7
ClCG05G016220 Citrullus lanatus HOM05D004800 ORTHO05D005842 3.5e-46 189.1 198 49.0
ATR0580G220 Amborella trichopoda HOM05D004800 ORTHO05D005842 7.7e-46 188.0 199 48.2
CARHR188420 Cardamine hirsuta HOM05D004800 ORTHO05D005842 2.3e-45 186.4 205 47.8
BolC9t53616H Brassica oleracea HOM05D004800 ORTHO05D005842 1.9e-44 183.3 197 49.7
CANSAT35G0701 Cannabis sativa HOM05D004800 ORTHO05D005842 3.3e-44 182.6 210 49.5
Lalb_Chr11g0063501 Lupinus albus HOM05D004800 ORTHO05D005842 4.3e-44 182.2 164 55.5
Aa31LG11G4300 Aethionema arabicum HOM05D004800 ORTHO05D005842 9.5e-44 181.0 202 48.0
Glyma.06G061100 Glycine max HOM05D004800 ORTHO05D005842 2.1e-43 179.9 207 46.4
ECA240G1139 Erigeron canadensis HOM05D004800 ORTHO05D005842 2.3e-42 176.4 142 62.7
CDE02G3876 Ceratophyllum demersum HOM05D004800 ORTHO05D005842 3.0e-42 176.0 204 50.5
arahy.Tifrunner.gnm1.ann1.D8NHAG Arachis hypogaea HOM05D004800 ORTHO05D005842 4.9e-40 168.7 205 43.9
Peaxi162Scf01038g00137 Petunia axillaris HOM05D004800 ORTHO05D005842 4.6e-38 162.2 120 69.2
Zm00001eb177850 Zea mays HOM05D004800 ORTHO05D005842 4.6e-38 162.2 205 45.9
unitig_26.g9784 Utricularia gibba HOM05D004800 ORTHO05D005842 5.9e-38 161.8 202 48.5
Nn2g12411 Nelumbo nucifera HOM05D004800 ORTHO05D005842 1.5e-36 157.1 133 59.4
Os08g0270200 Oryza sativa ssp. japonica HOM05D004800 ORTHO05D005842 2.5e-36 156.4 211 41.7
SHI21074 Sapria himalayana HOM05D004800 ORTHO05D005842 5.6e-36 155.2 224 43.3
arahy.Tifrunner.gnm1.ann1.1BAV2G Arachis hypogaea HOM05D004800 ORTHO05D005842 2.8e-35 152.9 205 41.0
BcaB04g19808 Brassica carinata HOM05D004800 ORTHO05D005842 4.7e-35 152.1 203 46.8
Nitab4.5_0000617g0080 Nicotiana tabacum HOM05D004800 ORTHO05D005842 3.4e-33 146.0 85 83.5
MBI14_g09103_MAGBIO Magnolia biondii HOM05D004800 ORTHO05D005842 7.8e-30 134.8 203 39.9
Potri.018G018100 Populus trichocarpa HOM05D004800 ORTHO05D005842 2.3e-29 133.3 118 57.6
arahy.Tifrunner.gnm1.ann1.D9UBCD Arachis hypogaea HOM05D004800 ORTHO05D005842 2.3e-26 123.2 208 36.5
arahy.Tifrunner.gnm1.ann1.CUZL6Q Arachis hypogaea HOM05D004800 ORTHO05D005842 8.9e-26 121.3 196 36.7
arahy.Tifrunner.gnm1.ann1.N4WP0Z Arachis hypogaea HOM05D004800 ORTHO05D005842 8.9e-26 121.3 196 36.7
Lj5g0013304 Lotus japonicus HOM05D004800 ORTHO05D005842 2.6e-25 119.8 196 38.3
arahy.Tifrunner.gnm1.ann1.YE5PM3 Arachis hypogaea HOM05D004800 ORTHO05D005842 4.4e-25 119.0 197 37.6
Phvul.001G041300 Phaseolus vulgaris HOM05D004800 ORTHO05D005842 2.1e-22 110.2 196 36.2
Mapoly0130s0032 Marchantia polymorpha HOM05D004800 ORTHO05D005842 3.5e-22 109.4 185 30.3
Pp3c2_14120 Physcomitrium patens HOM05D004800 ORTHO05D005842 3.0e-21 106.3 162 35.8
VMungo0647G1387 Vigna mungo HOM05D004800 ORTHO05D005842 1.5e-20 104.0 198 34.3
Glyma.14G101700 Glycine max HOM05D004800 ORTHO05D005842 3.3e-20 102.8 196 33.2
AagrBONN_evm.TU.Sc2ySwM_368.3173 Anthoceros agrestis HOM05D004800 ORTHO05D005842 2.1e-19 100.1 181 32.0
SMO140G0030 Selaginella moellendorffii HOM05D004800 ORTHO05D005842 1.1e-18 97.8 188 30.9
Psat6g026000 Pisum sativum HOM05D004800 ORTHO05D005842 1.4e-18 97.4 183 35.0
TPR.G38911 Trifolium pratense HOM05D004800 ORTHO05D005842 1.8e-18 97.1 198 34.8
Medtr1g014130 Medicago truncatula HOM05D004800 ORTHO05D005842 1.9e-15 87.0 175 35.4
Lalb_Chr24g0401961 Lupinus albus HOM05D004800 ORTHO05D005842 7.3e-12 75.1 103 37.9
SEGI_18119 Sequoiadendron giganteum HOM05D004800 ORTHO05D005842 7.3e-12 75.1 103 32.0
CBR_g8579 Chara braunii HOM05D004800 ORTHO05D005842 2.1e-11 73.6 141 31.2
Sopen01g020190 Solanum pennellii HOM05D004800 ORTHO05D005842 1.1e-10 71.2 70 57.1
Sopen01g040360 Solanum pennellii HOM05D004800 ORTHO05D005842 1.8e-10 70.5 70 55.7
Sopen07g026310 Solanum pennellii HOM05D004800 ORTHO05D005842 1.8e-10 70.5 70 55.7
Sopen11g020420 Solanum pennellii HOM05D004800 ORTHO05D010331 3.1e-10 69.7 66 60.6
Zm00001eb353150 Zea mays HOM05D004800 ORTHO05D005842 1.5e-09 67.4 121 38.8
Sopen07g029020 Solanum pennellii HOM05D004800 ORTHO05D005842 7.6e-09 65.1 61 57.4
MCO11G643 Micromonas commoda HOM05D004800 ORTHO05D005842 2.2e-08 63.5 152 27.0
Sed0015580 Sechium edule HOM05D004800 ORTHO05D005842 3.8e-08 62.8 65 46.2
Oeu042654.1 Olea europaea HOM05D004800 ORTHO05D005842 6.4e-08 62.0 94 45.7
TPR.G28957 Trifolium pratense HOM05D000201 ORTHO05D000421 1.2e-06 57.8 45 57.8


User provided reference genes

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