Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold147G36313 Striga asiatica HOM05D005024 ORTHO05D006396 2.4e-254 881.7 456 100.0
MSTRG.11771 Avicennia marina HOM05D005024 ORTHO05D006396 7.6e-168 594.3 484 66.1
Migut.A00327 Erythranthe guttata HOM05D005024 ORTHO05D006396 1.8e-164 583.2 484 66.1
SalBow4G3344 Salvia bowleyana HOM05D005024 ORTHO05D006396 1.7e-159 566.6 517 62.5
Dinv41847 Davidia involucrata HOM05D005024 ORTHO05D006396 5.5e-142 508.4 491 58.2
Cc08_g06760 Coffea canephora HOM05D005024 ORTHO05D006396 6.3e-138 495.0 483 57.3
CSS0015942 Camellia sinensis var. sinensis HOM05D005024 ORTHO05D006396 1.0e-135 487.6 488 57.6
Nitab4.5_0004346g0050 Nicotiana tabacum HOM05D005024 ORTHO05D006396 9.8e-131 471.1 483 55.5
Oeu045334.2 Olea europaea HOM05D005024 ORTHO05D006396 1.3e-127 460.7 532 51.5
MSTRG.25847 Avicennia marina HOM05D005024 ORTHO05D006396 1.6e-125 453.8 484 55.0
Atru.chr7.1825 Acer truncatum HOM05D005024 ORTHO05D006396 2.8e-125 453.0 478 55.0
Manes.16G087100 Manihot esculenta HOM05D005024 ORTHO05D006396 8.0e-125 451.4 485 53.6
Nitab4.5_0000508g0040 Nicotiana tabacum HOM05D005024 ORTHO05D006396 2.3e-124 449.9 469 54.4
Ciclev10007934m.g Citrus clementina HOM05D005024 ORTHO05D006396 1.1e-121 441.0 484 53.9
Potri.006G218800 Populus trichocarpa HOM05D005024 ORTHO05D006396 1.4e-121 440.7 485 52.6
MD08G1046400 Malus domestica HOM05D005024 ORTHO05D006396 7.0e-121 438.3 498 52.6
Manes.03G056600 Manihot esculenta HOM05D005024 ORTHO05D006396 1.2e-120 437.6 478 52.7
MD15G1047400 Malus domestica HOM05D005024 ORTHO05D006396 2.9e-119 433.0 475 53.5
Glyma.06G058100 Glycine max HOM05D005024 ORTHO05D006396 2.8e-117 426.4 477 50.9
Lj1g0011589 Lotus japonicus HOM05D005024 ORTHO05D006396 1.0e-116 424.5 477 52.6
TWI34G1336 Tripterygium wilfordii HOM05D005024 ORTHO05D006396 1.4e-116 424.1 474 51.3
Gorai.001G019200 Gossypium raimondii HOM05D005024 ORTHO05D006396 1.8e-116 423.7 480 51.0
Gohir.D07G018500 Gossypium hirsutum HOM05D005024 ORTHO05D006396 2.3e-116 423.3 480 50.8
Sabra06G0168600 Salix brachista HOM05D005024 ORTHO05D006396 1.2e-115 421.0 500 49.6
Gohir.A07G018700 Gossypium hirsutum HOM05D005024 ORTHO05D006396 1.3e-114 417.5 484 50.0
Lj7C207G3 Lonicera japonica HOM05D005024 ORTHO05D006396 1.7e-114 417.2 403 57.8
TWI63G0562 Tripterygium wilfordii HOM05D005024 ORTHO05D006396 1.7e-114 417.2 485 50.5
Duzib150G0504 Durio zibethinus HOM05D005024 ORTHO05D006396 2.2e-114 416.8 478 52.5
Oeu030211.1 Olea europaea HOM05D005024 ORTHO05D006396 2.2e-114 416.8 429 55.0
RcHm_v2.0_Chr6g0304801 Rosa chinensis HOM05D005024 ORTHO05D006396 2.2e-114 416.8 477 53.2
VMungo1309G0309 Vigna mungo HOM05D005024 ORTHO05D006396 3.7e-114 416.0 479 50.3
FvH4_2g36960 Fragaria vesca HOM05D005024 ORTHO05D006396 4.9e-114 415.6 477 53.0
Nn8g38600 Nelumbo nucifera HOM05D005024 ORTHO05D006396 4.9e-114 415.6 488 48.6
CiPaw.05G157300 Carya illinoinensis HOM05D005024 ORTHO05D006396 1.8e-113 413.7 437 56.1
Eucgr.C00744 Eucalyptus grandis HOM05D005024 ORTHO05D006396 7.0e-113 411.8 483 50.1
Duzib168G0917 Durio zibethinus HOM05D005024 ORTHO05D006396 9.2e-113 411.4 478 51.5
Psat5g034920 Pisum sativum HOM05D005024 ORTHO05D006396 1.6e-112 410.6 478 49.4
arahy.Tifrunner.gnm1.ann1.JR430F Arachis hypogaea HOM05D005024 ORTHO05D006396 6.0e-112 408.7 479 50.9
Rhsim06G0092200 Rhododendron simsii HOM05D005024 ORTHO05D006396 1.0e-111 407.9 440 53.4
GSVIVG01035495001 Vitis vinifera HOM05D005024 ORTHO05D006396 1.3e-111 407.5 350 61.7
arahy.Tifrunner.gnm1.ann1.Q4799Z Arachis hypogaea HOM05D005024 ORTHO05D006396 3.9e-111 406.0 479 50.9
MBI19_g09934_MAGBIO Magnolia biondii HOM05D005024 ORTHO05D006396 3.3e-110 402.9 435 51.3
Medtr3g105400 Medicago truncatula HOM05D005024 ORTHO05D006396 5.6e-110 402.1 477 50.3
FAN27G2149 Fragaria x ananassa HOM05D005024 ORTHO05D006396 1.2e-109 401.0 514 49.2
PSO401G0002 Papaver somniferum HOM05D005024 ORTHO05D006396 1.2e-109 401.0 497 48.3
Gohir.A05G037800 Gossypium hirsutum HOM05D005024 ORTHO05D006396 2.1e-109 400.2 477 50.1
FAN15G2531 Fragaria x ananassa HOM05D005024 ORTHO05D006396 2.8e-109 399.8 527 48.6
Ca_15807_v3 Cicer arietinum L. HOM05D005024 ORTHO05D006396 4.7e-109 399.1 477 49.1
DCAR_001244 Daucus carota HOM05D005024 ORTHO05D006396 6.2e-109 398.7 485 48.5
FAN20G2081 Fragaria x ananassa HOM05D005024 ORTHO05D006396 1.4e-108 397.5 527 48.6
CiPaw.15G090700 Carya illinoinensis HOM05D005024 ORTHO05D006396 1.8e-108 397.1 442 52.5
PSO724G1181 Papaver somniferum HOM05D005024 ORTHO05D006396 4.0e-108 396.0 494 47.8
PSO789G0001 Papaver somniferum HOM05D005024 ORTHO05D006396 4.0e-108 396.0 499 48.1
Gorai.009G039800 Gossypium raimondii HOM05D005024 ORTHO05D006396 5.2e-108 395.6 477 49.9
ClCG08G009730 Citrullus lanatus HOM05D005024 ORTHO05D006396 8.9e-108 394.8 499 47.3
Sopen08g021170 Solanum pennellii HOM05D005024 ORTHO05D006396 1.7e-106 390.6 345 60.0
COL.COLO4_21162 Corchorus olitorius HOM05D005024 ORTHO05D006396 3.7e-106 389.4 456 50.2
Lalb_Chr08g0244691 Lupinus albus HOM05D005024 ORTHO05D006396 4.1e-105 386.0 446 52.5
Lalb_Chr23g0268051 Lupinus albus HOM05D005024 ORTHO05D006396 1.2e-104 384.4 438 52.3
Solyc08g067240.4 Solanum lycopersicum HOM05D005024 ORTHO05D006396 3.5e-104 382.9 470 50.0
MELO3C011496.2 Cucumis melo HOM05D005024 ORTHO05D006396 1.3e-103 380.9 491 46.6
PGR142G1044 Punica granatum HOM05D005024 ORTHO05D006396 2.3e-103 380.2 490 46.7
Glyma.04G057500 Glycine max HOM05D005024 ORTHO05D006396 1.1e-102 377.9 443 50.1
Sed0007384 Sechium edule HOM05D005024 ORTHO05D006396 2.5e-102 376.7 524 44.7
Sc23g0006070 Simmondsia chinensis HOM05D005024 ORTHO05D006396 4.0e-100 369.4 478 45.8
Lsat_1_v5_gn_7_59161 Lactuca sativa HOM05D005024 ORTHO05D006396 6.8e-100 368.6 473 48.6
PGSC0003DMG400007379 Solanum tuberosum HOM05D005024 ORTHO05D006396 5.8e-99 365.5 284 65.8
Phvul.009G083900 Phaseolus vulgaris HOM05D005024 ORTHO05D006396 3.7e-98 362.8 346 56.9
Cpa.g.sc82.16 Carica papaya HOM05D005024 ORTHO05D006396 1.4e-97 360.9 342 56.1
HanXRQChr03g0067181 Helianthus annuus HOM05D005024 ORTHO05D006396 2.4e-97 360.1 483 46.4
Prupe.1G401800 Prunus persica HOM05D005024 ORTHO05D006396 5.1e-95 352.4 482 47.3
ECA240G2599 Erigeron canadensis HOM05D005024 ORTHO05D006396 1.5e-94 350.9 468 46.4
CsaV3_6G031850 Cucumis sativus L. HOM05D005024 ORTHO05D006396 5.2e-92 342.4 480 44.6
Gohir.D08G268300 Gossypium hirsutum HOM05D005024 ORTHO05D006396 4.4e-91 339.3 478 45.8
Gorai.004G286000 Gossypium raimondii HOM05D005024 ORTHO05D006396 9.9e-91 338.2 478 45.6
AUR62020277 Chenopodium quinoa HOM05D005024 ORTHO05D006396 1.1e-89 334.7 382 49.7
Thecc.09G065700 Theobroma cacao HOM05D005024 ORTHO05D006396 3.2e-89 333.2 330 54.8
Gohir.D05G039300 Gossypium hirsutum HOM05D005024 ORTHO05D006396 1.6e-88 330.9 477 45.3
ECA236G2474 Erigeron canadensis HOM05D005024 ORTHO05D006396 1.0e-87 328.2 466 43.3
Os09g0440200 Oryza sativa ssp. japonica HOM05D005024 ORTHO05D006396 3.9e-87 326.2 478 42.3
TAR624G0706 Trochodendron aralioides HOM05D005024 ORTHO05D006396 5.1e-87 325.9 457 44.2
SEGI_27832 Sequoiadendron giganteum HOM05D005024 ORTHO05D006396 6.6e-87 325.5 491 42.8
Aqoxy4G00037 Aquilegia oxysepala HOM05D005024 ORTHO05D006396 1.5e-86 324.3 427 45.0
Zm00001eb314080 Zea mays HOM05D005024 ORTHO05D006396 1.4e-84 317.8 491 40.3
AUR62037728 Chenopodium quinoa HOM05D005024 ORTHO05D006396 9.9e-83 311.6 356 50.3
THA.LOC104819895 Tarenaya hassleriana HOM05D005024 ORTHO05D006396 2.9e-82 310.1 477 41.7
Ah.07g205360 Amaranthus hybridus HOM05D005024 ORTHO05D006396 1.1e-81 308.1 341 49.3
AT2G26270 Arabidopsis thaliana HOM05D005024 ORTHO05D006396 5.4e-81 305.8 482 41.5
Peaxi162Scf00922g00210 Petunia axillaris HOM05D005024 ORTHO05D006396 2.1e-80 303.9 430 45.1
Sp4g06550 Schrenkiella parvula HOM05D005024 ORTHO05D006396 2.1e-80 303.9 476 41.4
BcaB06g28091 Brassica carinata HOM05D005024 ORTHO05D006396 1.3e-79 301.2 486 39.7
CARHR115110 Cardamine hirsuta HOM05D005024 ORTHO05D006396 5.1e-79 299.3 481 40.5
A04p20310 Brassica napus HOM05D005024 ORTHO05D006396 6.6e-79 298.9 487 40.5
BraA04t17610Z Brassica rapa HOM05D005024 ORTHO05D006396 6.6e-79 298.9 487 40.5
BcaC02g08288 Brassica carinata HOM05D005024 ORTHO05D006396 5.6e-78 295.8 490 40.0
Aa31LG5G9530 Aethionema arabicum HOM05D005024 ORTHO05D006396 9.6e-78 295.0 497 40.4
EL10Ac2g02404 Beta vulgaris HOM05D005024 ORTHO05D006396 2.8e-77 293.5 480 41.0
C04p56010 Brassica napus HOM05D005024 ORTHO05D006396 3.6e-77 293.1 490 40.0
BolC4t27134H Brassica oleracea HOM05D005024 ORTHO05D006396 3.6e-77 293.1 490 40.0
BcaB08g35274 Brassica carinata HOM05D005024 ORTHO05D006396 4.0e-76 289.7 476 41.2
Gohir.A08G247100 Gossypium hirsutum HOM05D005024 ORTHO05D006396 3.4e-75 286.6 342 49.4
HanXRQChr05g0136401 Helianthus annuus HOM05D005024 ORTHO05D006396 5.8e-75 285.8 516 37.2
Rhsim06G0128300 Rhododendron simsii HOM05D005024 ORTHO05D006396 1.9e-73 280.8 391 44.2
THA.LOC104810953 Tarenaya hassleriana HOM05D005024 ORTHO05D006396 7.9e-72 275.4 471 39.3
Thhalv10001999m.g Eutrema salsugineum HOM05D005024 ORTHO05D006396 3.0e-71 273.5 354 44.9
ATR0053G058 Amborella trichopoda HOM05D005024 ORTHO05D006396 2.5e-70 270.4 355 46.2
HPP92_013024 Vanilla planifolia HOM05D005024 ORTHO05D006396 3.3e-70 270.0 357 45.1
AT3G43930 Arabidopsis thaliana HOM05D005024 ORTHO05D006396 6.2e-69 265.8 455 40.9
Carub.0004s0614 Capsella rubella HOM05D005024 ORTHO05D006396 8.1e-69 265.4 344 44.5
CDE07G0506 Ceratophyllum demersum HOM05D005024 ORTHO05D006396 1.2e-67 261.5 355 43.4
unitig_46.g18535 Utricularia gibba HOM05D005024 ORTHO05D006396 4.2e-65 253.1 355 45.4
AL5G21960 Arabidopsis lyrata HOM05D005024 ORTHO05D006396 1.6e-64 251.1 494 36.8
SHI28014 Sapria himalayana HOM05D005024 ORTHO05D006396 3.9e-63 246.5 362 41.7
Lsat_1_v5_gn_8_70380 Lactuca sativa HOM05D005024 ORTHO05D006396 1.5e-62 244.6 341 44.6
CAN.G348.11 Capsicum annuum HOM05D005024 ORTHO05D006396 3.3e-62 243.4 257 54.1
Haze_18325 Corylus avellana HOM05D005024 ORTHO05D006396 2.1e-61 240.7 306 49.7
Thhalv10011063m.g Eutrema salsugineum HOM05D005024 ORTHO05D006396 2.8e-61 240.4 450 37.8
SMO169G0310 Selaginella moellendorffii HOM05D005024 ORTHO05D006396 3.1e-60 236.9 434 36.6
Pp3c6_19110 Physcomitrium patens HOM05D005024 ORTHO05D006396 4.2e-57 226.5 444 35.8
CiPaw.05G156800 Carya illinoinensis HOM05D005024 ORTHO05D006396 1.8e-55 221.1 193 62.2
vmacro21130 Vaccinium macrocarpon HOM05D005024 ORTHO05D006396 5.7e-54 216.1 318 43.4
TPR.G31221 Trifolium pratense HOM05D005024 ORTHO05D006396 6.3e-53 212.6 156 69.9
AagrBONN_evm.TU.Sc2ySwM_228.2412 Anthoceros agrestis HOM05D005024 ORTHO05D006396 4.1e-52 209.9 441 32.7
Pp3c3_23860 Physcomitrium patens HOM05D005024 ORTHO05D006396 2.5e-49 200.7 499 32.5
CBR_g17947 Chara braunii HOM05D005024 ORTHO05D006396 7.7e-43 179.1 510 30.8
SMO336G0001 Selaginella moellendorffii HOM05D005024 ORTHO05D006396 2.3e-39 167.5 322 34.8
unitig_46.g18534 Utricularia gibba HOM05D005024 ORTHO05D006396 3.5e-27 127.1 76 77.6
Carub.0005s0971 Capsella rubella HOM05D005024 ORTHO05D006396 8.8e-23 112.5 120 47.5
TPR.G26129 Trifolium pratense HOM05D005024 ORTHO05D006396 3.6e-16 90.5 85 60.0
SHI08483 Sapria himalayana HOM05D005024 ORTHO05D006396 6.8e-15 86.3 92 42.4
TPR.G26130 Trifolium pratense HOM05D005024 ORTHO05D006396 3.4e-14 84.0 45 80.0
TPR.G3563 Trifolium pratense HOM05D005024 ORTHO05D006396 9.8e-14 82.4 92 54.3
Haze_18329 Corylus avellana HOM05D001982 ORTHO05D008035 1.7e-10 71.6 73 57.5
QL02p017308 Quercus lobata HOM05D005024 ORTHO05D006396 2.1e-08 64.7 77 51.9
CBR_g899 Chara braunii HOM05D005024 ORTHO05D006396 2.8e-08 64.3 166 31.3
GSVIVG01035496001 Vitis vinifera HOM05D005024 ORTHO05D006396 5.2e-07 60.1 49 59.2
Carub.0004s0613 Capsella rubella HOM05D005024 ORTHO05D006396 2.6e-06 57.8 30 90.0


User provided reference genes

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