Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold147G36288 Striga asiatica HOM05D003821 ORTHO05D004449 4.9e-64 247.7 128 100.0
SGA_v2.0_scaffold428G51522 Striga asiatica HOM05D003821 ORTHO05D004449 5.0e-24 114.8 73 80.8
Nitab4.5_0000570g0120 Nicotiana tabacum HOM05D003821 ORTHO05D004449 1.5e-23 113.2 71 80.3
FAN12G1096 Fragaria x ananassa HOM05D003821 ORTHO05D004449 4.7e-22 108.2 70 78.6
MSTRG.3917 Avicennia marina HOM05D003821 ORTHO05D004449 1.0e-21 107.1 95 64.2
Migut.G00164 Erythranthe guttata HOM05D003821 ORTHO05D004449 1.8e-21 106.3 88 68.2
Peaxi162Scf00048g00209 Petunia axillaris HOM05D003821 ORTHO05D004449 5.2e-21 104.8 64 84.4
CAN.G185.14 Capsicum annuum HOM05D003821 ORTHO05D004449 8.8e-21 104.0 86 68.6
Oeu026313.1 Olea europaea HOM05D003821 ORTHO05D004449 1.1e-20 103.6 87 67.8
Oeu027727.1 Olea europaea HOM05D003821 ORTHO05D004449 1.1e-20 103.6 87 66.7
MSTRG.24794 Avicennia marina HOM05D003821 ORTHO05D004449 3.3e-20 102.1 87 67.8
Hma1.2p1_0078F.1_g040550 Hydrangea macrophylla HOM05D003821 ORTHO05D004449 9.7e-20 100.5 86 68.6
SGA_v2.0_scaffold91G27999 Striga asiatica HOM05D003821 ORTHO05D004449 2.2e-19 99.4 113 54.9
FAN17G0959 Fragaria x ananassa HOM05D003821 ORTHO05D004449 1.1e-18 97.1 66 77.3
ClCG09G006050 Citrullus lanatus HOM05D003821 ORTHO05D004449 2.4e-18 95.9 69 71.0
Manes.15G012400 Manihot esculenta HOM05D003821 ORTHO05D004449 4.1e-18 95.1 87 64.4
Rhsim02G0009100 Rhododendron simsii HOM05D003821 ORTHO05D004449 4.1e-18 95.1 101 56.4
TWI09G0102 Tripterygium wilfordii HOM05D003821 ORTHO05D004449 4.1e-18 95.1 86 62.8
TWI53G1984 Tripterygium wilfordii HOM05D003821 ORTHO05D004449 7.0e-18 94.4 86 61.6
Nitab4.5_0000191g0110 Nicotiana tabacum HOM05D003821 ORTHO05D004449 1.2e-17 93.6 114 51.8
Nitab4.5_0004438g0100 Nicotiana tabacum HOM05D003821 ORTHO05D004449 1.7e-16 89.7 96 53.1
SalBow2G1159 Salvia bowleyana HOM05D003821 ORTHO05D004449 2.9e-16 89.0 103 56.3
Ca_10352_v3 Cicer arietinum L. HOM05D003821 ORTHO05D004449 6.5e-16 87.8 86 59.3
PGSC0003DMG400022856 Solanum tuberosum HOM05D003821 ORTHO05D004449 6.5e-16 87.8 115 49.6
Actinidia32231 Actinidia chinensis HOM05D003821 ORTHO05D004449 1.9e-15 86.3 79 63.3
CiPaw.08G097300 Carya illinoinensis HOM05D003821 ORTHO05D004449 2.5e-15 85.9 86 57.0
Haze_01204 Corylus avellana HOM05D003821 ORTHO05D004449 4.2e-15 85.1 103 52.4
BcaC06g32965 Brassica carinata HOM05D003821 ORTHO05D004449 5.5e-15 84.7 66 72.7
CiPaw.07G106400 Carya illinoinensis HOM05D003821 ORTHO05D004449 5.5e-15 84.7 78 61.5
Psat3g022560 Pisum sativum HOM05D003821 ORTHO05D004449 5.5e-15 84.7 87 57.5
BcaNung00244 Brassica carinata HOM05D000802 ORTHO05D013138 1.2e-14 83.6 75 68.0
Nitab4.5_0003546g0070 Nicotiana tabacum HOM05D003821 ORTHO05D004449 1.2e-14 83.6 106 50.0
Sed0001615 Sechium edule HOM05D003821 ORTHO05D004449 1.2e-14 83.6 99 51.5
BcaC07g37933 Brassica carinata HOM05D003821 ORTHO05D004449 2.7e-14 82.4 81 63.0
Phvul.009G247900 Phaseolus vulgaris HOM05D003821 ORTHO05D004449 2.7e-14 82.4 78 59.0
FAN27G2508 Fragaria x ananassa HOM05D003821 ORTHO05D004449 3.6e-14 82.0 84 54.8
Haze_04896 Corylus avellana HOM05D003821 ORTHO05D004449 4.7e-14 81.6 91 53.8
FAN15G2810 Fragaria x ananassa HOM05D003821 ORTHO05D004449 4.7e-14 81.6 84 56.0
FAN24G2279 Fragaria x ananassa HOM05D003821 ORTHO05D004449 4.7e-14 81.6 84 56.0
COL.COLO4_13871 Corchorus olitorius HOM05D003821 ORTHO05D004449 6.1e-14 81.3 95 52.6
Sc24g0003850 Simmondsia chinensis HOM05D000714 ORTHO05D000544 6.1e-14 81.3 70 70.0
AL7G39490 Arabidopsis lyrata HOM05D003821 ORTHO05D004449 8.0e-14 80.9 87 57.5
AT4G15802 Arabidopsis thaliana HOM05D003821 ORTHO05D004449 8.0e-14 80.9 87 57.5
BcaC06g33446 Brassica carinata HOM05D003821 ORTHO05D004449 8.0e-14 80.9 81 59.3
FAN07G0841 Fragaria x ananassa HOM05D003821 ORTHO05D004449 1.0e-13 80.5 88 53.4
AUR62008616 Chenopodium quinoa HOM05D003821 ORTHO05D004449 1.4e-13 80.1 82 56.1
vmacro15236 Vaccinium macrocarpon HOM05D003821 ORTHO05D004449 1.8e-13 79.7 107 51.4
VMungo1309G1076 Vigna mungo HOM05D003821 ORTHO05D004449 1.8e-13 79.7 86 53.5
CARHR290310 Cardamine hirsuta HOM05D003821 ORTHO05D004449 2.3e-13 79.3 87 57.5
A01p21700 Brassica napus HOM05D000802 ORTHO05D013138 3.0e-13 79.0 76 67.1
A03p49340 Brassica napus HOM05D003821 ORTHO05D004449 3.0e-13 79.0 87 56.3
Carub.0007s2585 Capsella rubella HOM05D003821 ORTHO05D004449 4.0e-13 78.6 83 57.8
DCAR_002813 Daucus carota HOM05D003821 ORTHO05D004449 4.0e-13 78.6 76 56.6
Ah.04g153550 Amaranthus hybridus HOM05D003821 ORTHO05D004449 5.2e-13 78.2 77 62.3
arahy.Tifrunner.gnm1.ann1.UD53LE Arachis hypogaea HOM05D003821 ORTHO05D004449 5.2e-13 78.2 83 57.8
AUR62033168 Chenopodium quinoa HOM05D003821 ORTHO05D004449 5.2e-13 78.2 82 54.9
FAN20G2567 Fragaria x ananassa HOM05D000897 ORTHO05D000716 5.2e-13 78.2 83 55.4
Atru.chr4.2835 Acer truncatum HOM05D003821 ORTHO05D004449 8.8e-13 77.4 134 41.8
Migut.N00088 Erythranthe guttata HOM05D003821 ORTHO05D004449 2.6e-12 75.9 89 55.1
BolC7t45268H Brassica oleracea HOM05D003821 ORTHO05D004449 3.4e-12 75.5 92 52.2
QL10p053326 Quercus lobata HOM05D003821 ORTHO05D004449 3.4e-12 75.5 93 50.5
QL10p054532 Quercus lobata HOM05D003821 ORTHO05D004449 3.4e-12 75.5 93 50.5
BcaB04g18333 Brassica carinata HOM05D003821 ORTHO05D004449 4.4e-12 75.1 87 52.9
Cpa.g.sc9.208 Carica papaya HOM05D003821 ORTHO05D004449 4.4e-12 75.1 103 47.6
RcHm_v2.0_Chr6g0293541 Rosa chinensis HOM05D003821 ORTHO05D004449 4.4e-12 75.1 107 44.9
Thecc.04G284600 Theobroma cacao HOM05D003821 ORTHO05D004449 4.4e-12 75.1 86 52.3
BraA08t33190Z Brassica rapa HOM05D003821 ORTHO05D004449 9.8e-12 73.9 107 48.6
DCAR_013986 Daucus carota HOM05D003821 ORTHO05D004449 9.8e-12 73.9 101 48.5
Medtr1g088760 Medicago truncatula HOM05D003821 ORTHO05D004449 1.3e-11 73.6 114 43.0
TPR.G9594 Trifolium pratense HOM05D003821 ORTHO05D004449 1.3e-11 73.6 114 44.7
BraA03t14035Z Brassica rapa HOM05D003821 ORTHO05D004449 2.2e-11 72.8 86 53.5
Prupe.1G136900 Prunus persica HOM05D003821 ORTHO05D004449 2.2e-11 72.8 87 52.9
vmacro08148 Vaccinium macrocarpon HOM05D003821 ORTHO05D004449 2.2e-11 72.8 150 38.0
arahy.Tifrunner.gnm1.ann1.LH51N9 Arachis hypogaea HOM05D003821 ORTHO05D004449 3.7e-11 72.0 95 50.5
FvH4_4g18020 Fragaria vesca HOM05D003821 ORTHO05D004449 6.3e-11 71.2 88 52.3
Nn4g25849 Nelumbo nucifera HOM05D003821 ORTHO05D004449 6.3e-11 71.2 86 53.5
TAR362G0968 Trochodendron aralioides HOM05D003821 ORTHO05D004449 6.3e-11 71.2 85 54.1
CsaV3_7G029090 Cucumis sativus L. HOM05D003821 ORTHO05D004449 1.1e-10 70.5 68 60.3
Gorai.004G142200 Gossypium raimondii HOM05D003821 ORTHO05D004449 1.8e-10 69.7 126 38.1
TPR.G33980 Trifolium pratense HOM05D003821 ORTHO05D004449 1.8e-10 69.7 104 45.2
BraA01t02079Z Brassica rapa HOM05D000802 ORTHO05D013138 4.1e-10 68.6 103 49.5
Potri.010G025000 Populus trichocarpa HOM05D003821 ORTHO05D004449 4.1e-10 68.6 87 49.4
CANSAT78G0465 Cannabis sativa HOM05D003821 ORTHO05D004449 5.4e-10 68.2 98 48.0
A08p11990 Brassica napus HOM05D003821 ORTHO05D004449 7.0e-10 67.8 88 53.4
CAN.G484.32 Capsicum annuum HOM05D003821 ORTHO05D004449 1.2e-09 67.0 130 43.1
Rhsim04G0221500 Rhododendron simsii HOM05D003821 ORTHO05D004449 1.2e-09 67.0 52 73.1
RcHm_v2.0_Chr4g0422221 Rosa chinensis HOM05D003821 ORTHO05D004449 1.6e-09 66.6 43 81.4
C07p47410 Brassica napus HOM05D003821 ORTHO05D004449 2.0e-09 66.2 116 40.5
Ciclev10007067m.g Citrus clementina HOM05D003821 ORTHO05D004449 2.7e-09 65.9 127 37.8
TWI79G0264 Tripterygium wilfordii HOM05D003821 ORTHO05D004449 1.0e-08 63.9 70 54.3
Potri.008G208100 Populus trichocarpa HOM05D003821 ORTHO05D004449 1.7e-08 63.2 87 46.0
ATR0580G132 Amborella trichopoda HOM05D003821 ORTHO05D004449 2.9e-08 62.4 103 45.6
Gohir.D08G138600 Gossypium hirsutum HOM05D003821 ORTHO05D004449 2.9e-08 62.4 86 45.3
PGR031G0623 Punica granatum HOM05D003821 ORTHO05D004449 3.8e-08 62.0 87 49.4
unitig_748.g8733 Utricularia gibba HOM05D003821 ORTHO05D004449 3.8e-08 62.0 87 46.0
Manes.03G194900 Manihot esculenta HOM05D003821 ORTHO05D004449 5.0e-08 61.6 79 48.1
Os06g0274000 Oryza sativa ssp. japonica HOM05D003821 ORTHO05D004449 5.0e-08 61.6 83 53.0
TAR365G0642 Trochodendron aralioides HOM05D003821 ORTHO05D004449 5.0e-08 61.6 95 45.3
CSS0027872 Camellia sinensis var. sinensis HOM05D003821 ORTHO05D004449 6.5e-08 61.2 44 75.0
Sabra08G0153500 Salix brachista HOM05D003821 ORTHO05D004449 6.5e-08 61.2 127 37.0
Aa31LG8G3720 Aethionema arabicum HOM05D003821 ORTHO05D004449 8.5e-08 60.8 79 50.6
FvH4_2g25350 Fragaria vesca HOM05D003821 ORTHO05D004449 8.5e-08 60.8 87 44.8
Potri.014G131701 Populus trichocarpa HOM05D003821 ORTHO05D004449 1.1e-07 60.5 85 48.2
Gohir.A08G117600 Gossypium hirsutum HOM05D003821 ORTHO05D004449 1.9e-07 59.7 87 43.7
THA.LOC104820264 Tarenaya hassleriana HOM05D003821 ORTHO05D004449 1.9e-07 59.7 84 48.8
EL10Ac7g17441 Beta vulgaris HOM05D003821 ORTHO05D004449 4.2e-07 58.5 125 37.6
unitig_32.g10644 Utricularia gibba HOM05D003821 ORTHO05D004449 4.2e-07 58.5 36 80.6
Lj5g0023739 Lotus japonicus HOM05D003821 ORTHO05D004449 7.2e-07 57.8 82 46.3
Aqoxy1G02453 Aquilegia oxysepala HOM05D036700 ORTHO05D004449 9.4e-07 57.4 116 38.8
Atru.chr5.1182 Acer truncatum HOM05D003821 ORTHO05D004449 1.2e-06 57.0 78 46.2
Hma1.2p1_0209F.1_g088610 Hydrangea macrophylla HOM05D003821 ORTHO05D004449 1.2e-06 57.0 55 58.2
Thecc.01G297100 Theobroma cacao HOM05D003821 ORTHO05D004449 2.7e-06 55.8 88 43.2
Sabra10G0014100 Salix brachista HOM05D003821 ORTHO05D004449 4.7e-06 55.1 39 76.9
Zm00001eb380410 Zea mays HOM05D003821 ORTHO05D004449 4.7e-06 55.1 72 52.8
SalBow5G0239 Salvia bowleyana HOM05D007625 ORTHO05D009738 6.1e-06 54.7 34 82.4
Duzib138G0767 Durio zibethinus HOM05D003821 ORTHO05D004449 8.0e-06 54.3 88 39.8
Manes.01G217100 Manihot esculenta HOM05D003821 ORTHO05D004449 8.0e-06 54.3 87 42.5


User provided reference genes

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