Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold146G36252 Striga asiatica HOM05D005678 ORTHO05D006894 3.9e-88 328.2 175 100.0
SalBow6G4551 Salvia bowleyana HOM05D005678 ORTHO05D006894 1.2e-36 157.1 176 56.8
Dinv16205 Davidia involucrata HOM05D005678 ORTHO05D006894 1.5e-34 150.2 175 53.7
HanXRQChr17g0536371 Helianthus annuus HOM05D005678 ORTHO05D006894 1.9e-34 149.8 185 51.4
GSVIVG01035539001 Vitis vinifera HOM05D005678 ORTHO05D006894 2.5e-34 149.4 180 52.8
Sc09g0007970 Simmondsia chinensis HOM05D005678 ORTHO05D006894 3.3e-34 149.1 173 54.3
Oeu009186.1 Olea europaea HOM05D005678 ORTHO05D006894 7.3e-34 147.9 159 57.9
Actinidia03578 Actinidia chinensis HOM05D005678 ORTHO05D006894 1.2e-33 147.1 175 49.7
Sc09g0007960 Simmondsia chinensis HOM05D005678 ORTHO05D006894 3.6e-33 145.6 90 75.6
Migut.A00794 Erythranthe guttata HOM05D005678 ORTHO05D006894 8.0e-33 144.4 102 68.6
vmacro00604 Vaccinium macrocarpon HOM05D005678 ORTHO05D006894 1.0e-32 144.1 151 56.3
QL12p024739 Quercus lobata HOM05D005678 ORTHO05D006894 1.8e-32 143.3 110 64.5
HanXRQChr06g0173291 Helianthus annuus HOM05D005678 ORTHO05D006894 2.3e-32 142.9 175 49.7
Manes.03G002700 Manihot esculenta HOM05D005678 ORTHO05D006894 3.1e-32 142.5 178 52.8
Gohir.A05G065600 Gossypium hirsutum HOM05D005678 ORTHO05D006894 5.2e-32 141.7 148 54.1
PSO063G6472 Papaver somniferum HOM05D005678 ORTHO05D006894 5.2e-32 141.7 177 50.3
Duzib187G0563 Durio zibethinus HOM05D005678 ORTHO05D006894 6.8e-32 141.4 117 61.5
Eucgr.C02102 Eucalyptus grandis HOM05D005678 ORTHO05D006894 6.8e-32 141.4 87 75.9
Gohir.D05G068200 Gossypium hirsutum HOM05D005678 ORTHO05D006894 2.0e-31 139.8 149 56.4
Hma1.2p1_0102F.1_g049830 Hydrangea macrophylla HOM05D005678 ORTHO05D006894 2.6e-31 139.4 177 52.0
Gorai.009G069000 Gossypium raimondii HOM05D005678 ORTHO05D006894 3.4e-31 139.0 148 54.1
Nitab4.5_0008905g0030 Nicotiana tabacum HOM05D005678 ORTHO05D006894 4.4e-31 138.7 176 50.6
THA.LOC104801628 Tarenaya hassleriana HOM05D005678 ORTHO05D006894 7.5e-31 137.9 185 49.2
Lj5g0006596 Lotus japonicus HOM05D005678 ORTHO05D006894 1.3e-30 137.1 175 48.6
PSO170G6167 Papaver somniferum HOM05D005678 ORTHO05D006894 1.3e-30 137.1 176 47.2
Ciclev10009502m.g Citrus clementina HOM05D005678 ORTHO05D006894 1.7e-30 136.7 99 64.6
Prupe.1G462000 Prunus persica HOM05D005678 ORTHO05D006894 2.2e-30 136.3 89 71.9
CANSAT25G2809 Cannabis sativa HOM05D005678 ORTHO05D006894 2.9e-30 136.0 137 53.3
Cpa.g.sc244.11 Carica papaya HOM05D005678 ORTHO05D006894 2.9e-30 136.0 176 46.6
CiPaw.08G018100 Carya illinoinensis HOM05D005678 ORTHO05D006894 2.9e-30 136.0 175 50.3
Potri.018G004901 Populus trichocarpa HOM05D005678 ORTHO05D006894 2.9e-30 136.0 102 62.7
CiPaw.07G214300 Carya illinoinensis HOM05D005678 ORTHO05D006894 3.7e-30 135.6 155 54.2
AL7G20710 Arabidopsis lyrata HOM05D005678 ORTHO05D006894 1.1e-29 134.0 176 51.7
arahy.Tifrunner.gnm1.ann1.V3TD4F Arachis hypogaea HOM05D005678 ORTHO05D006894 1.1e-29 134.0 173 52.0
arahy.Tifrunner.gnm1.ann1.XT6XQE Arachis hypogaea HOM05D005678 ORTHO05D006894 1.1e-29 134.0 173 52.0
Phvul.001G058200 Phaseolus vulgaris HOM05D005678 ORTHO05D006894 1.1e-29 134.0 87 72.4
Lsat_1_v5_gn_3_22720 Lactuca sativa HOM05D005678 ORTHO05D006894 1.4e-29 133.7 178 49.4
Sed0002806 Sechium edule HOM05D005678 ORTHO05D006894 1.4e-29 133.7 176 47.2
Thecc.09G005500 Theobroma cacao HOM05D005678 ORTHO05D006894 1.4e-29 133.7 177 49.7
TAR383G0152 Trochodendron aralioides HOM05D005678 ORTHO05D006894 3.2e-29 132.5 179 48.0
Sabra18G0010600 Salix brachista HOM05D005678 ORTHO05D006894 4.1e-29 132.1 102 61.8
MSTRG.1882 Avicennia marina HOM05D005678 ORTHO05D006894 5.4e-29 131.7 190 45.3
CARHR117620 Cardamine hirsuta HOM05D005678 ORTHO05D006894 7.0e-29 131.3 87 71.3
Nitab4.5_0001356g0020 Nicotiana tabacum HOM05D005678 ORTHO05D006894 7.0e-29 131.3 178 52.2
Sp7g29220 Schrenkiella parvula HOM05D005678 ORTHO05D006894 7.0e-29 131.3 187 48.7
Cc08_g14330 Coffea canephora HOM05D005678 ORTHO05D006894 2.7e-28 129.4 177 49.2
Duzib168G0107 Durio zibethinus HOM05D005678 ORTHO05D006894 3.5e-28 129.0 110 60.0
ECA246G1984 Erigeron canadensis HOM05D005678 ORTHO05D006894 3.5e-28 129.0 129 52.7
CAN.G859.10 Capsicum annuum HOM05D005678 ORTHO05D006894 4.6e-28 128.6 184 46.7
MELO3C011199.2 Cucumis melo HOM05D005678 ORTHO05D006894 4.6e-28 128.6 178 48.9
BraA01t00642Z Brassica rapa HOM05D005678 ORTHO05D006894 6.0e-28 128.3 183 48.1
Glyma.14G133100 Glycine max HOM05D005678 ORTHO05D006894 6.0e-28 128.3 116 60.3
MD00G1173100 Malus domestica HOM05D005678 ORTHO05D006894 1.0e-27 127.5 93 63.4
MD08G1134200 Malus domestica HOM05D005678 ORTHO05D006894 1.0e-27 127.5 93 63.4
FAN15G3337 Fragaria x ananassa HOM05D005678 ORTHO05D006894 1.3e-27 127.1 180 46.1
Glyma.17G201900 Glycine max HOM05D005678 ORTHO05D006894 1.7e-27 126.7 88 68.2
Aa31LG2G19000 Aethionema arabicum HOM05D005678 ORTHO05D006894 2.3e-27 126.3 177 48.0
A08p18690 Brassica napus HOM05D002168 ORTHO05D002277 2.3e-27 126.3 117 59.8
A01p06940 Brassica napus HOM05D005678 ORTHO05D006894 3.0e-27 125.9 180 47.2
SGA_v2.0_scaffold144G35960 Striga asiatica HOM05D000250 ORTHO05D002850 3.0e-27 125.9 112 56.2
ClCG08G012760 Citrullus lanatus HOM05D005678 ORTHO05D006894 5.0e-27 125.2 184 45.7
Lalb_Chr24g0402441 Lupinus albus HOM05D005678 ORTHO05D006894 5.0e-27 125.2 86 70.9
TWI63G1651 Tripterygium wilfordii HOM05D005678 ORTHO05D006894 5.0e-27 125.2 91 64.8
Carub.0004s0379 Capsella rubella HOM05D005678 ORTHO05D006894 6.6e-27 124.8 85 68.2
THA.LOC104803592 Tarenaya hassleriana HOM05D005678 ORTHO05D006894 6.6e-27 124.8 189 47.1
AT2G24440 Arabidopsis thaliana HOM05D005678 ORTHO05D006894 8.6e-27 124.4 85 68.2
BcaC09g51917 Brassica carinata HOM05D005678 ORTHO05D006894 8.6e-27 124.4 176 45.5
C01p07670 Brassica napus HOM05D005678 ORTHO05D006894 8.6e-27 124.4 176 45.5
BolC1t00747H Brassica oleracea HOM05D005678 ORTHO05D006894 8.6e-27 124.4 176 45.5
Psat6g032200 Pisum sativum HOM05D005678 ORTHO05D006894 8.6e-27 124.4 184 46.2
PGSC0003DMG400003060 Solanum tuberosum HOM05D005678 ORTHO05D006894 8.6e-27 124.4 178 47.8
VMungo0647G1216 Vigna mungo HOM05D005678 ORTHO05D006894 1.1e-26 124.0 171 48.0
AL4G14870 Arabidopsis lyrata HOM05D005678 ORTHO05D006894 1.5e-26 123.6 85 67.1
BcaB06g27969 Brassica carinata HOM05D005678 ORTHO05D006894 1.9e-26 123.2 87 67.8
Carub.0007s0920 Capsella rubella HOM05D005678 ORTHO05D006894 1.9e-26 123.2 190 44.7
FAN27G1837 Fragaria x ananassa HOM05D005678 ORTHO05D006894 1.9e-26 123.2 180 45.0
PGR142G1712 Punica granatum HOM05D005678 ORTHO05D006894 1.9e-26 123.2 195 43.6
AT4G31360 Arabidopsis thaliana HOM05D005678 ORTHO05D006894 3.3e-26 122.5 187 45.5
BcaC02g08455 Brassica carinata HOM05D005678 ORTHO05D006894 3.3e-26 122.5 87 67.8
C04p54050 Brassica napus HOM05D005678 ORTHO05D006894 3.3e-26 122.5 87 67.8
BolC4t26956H Brassica oleracea HOM05D005678 ORTHO05D006894 3.3e-26 122.5 87 67.8
Sabra06G0213900 Salix brachista HOM05D005678 ORTHO05D006894 5.6e-26 121.7 87 63.2
Zm00001eb409020 Zea mays HOM05D005678 ORTHO05D006894 9.5e-26 120.9 89 61.8
FAN20G0695 Fragaria x ananassa HOM05D005678 ORTHO05D006894 1.6e-25 120.2 180 44.4
MBI16_g25208_MAGBIO Magnolia biondii HOM05D005678 ORTHO05D006894 1.6e-25 120.2 158 51.3
A04p18760 Brassica napus HOM05D005678 ORTHO05D006894 3.6e-25 119.0 87 66.7
A09p56300 Brassica napus HOM05D005678 ORTHO05D006894 3.6e-25 119.0 87 64.4
BraA04t17485Z Brassica rapa HOM05D005678 ORTHO05D006894 3.6e-25 119.0 87 66.7
BraA09t41025Z Brassica rapa HOM05D005678 ORTHO05D006894 3.6e-25 119.0 87 64.4
TPR.G12081 Trifolium pratense HOM05D005678 ORTHO05D006894 3.6e-25 119.0 180 48.3
CsaV3_2G031490 Cucumis sativus L. HOM05D005678 ORTHO05D006894 4.7e-25 118.6 178 45.5
BolC8t51499H Brassica oleracea HOM05D005678 ORTHO05D006894 6.2e-25 118.2 87 64.4
C08p39250 Brassica napus HOM05D005678 ORTHO05D006894 1.4e-24 117.1 86 62.8
Sopen08g029020 Solanum pennellii HOM05D005678 ORTHO05D006894 1.4e-24 117.1 177 46.3
FvH4_2g30710 Fragaria vesca HOM05D005678 ORTHO05D006894 2.3e-24 116.3 188 43.1
FAN24G1799 Fragaria x ananassa HOM05D000178 ORTHO05D001582 2.3e-24 116.3 188 43.1
Os11g0704000 Oryza sativa ssp. japonica HOM05D005678 ORTHO05D006894 2.3e-24 116.3 85 62.4
TWI34G1196 Tripterygium wilfordii HOM05D005678 ORTHO05D006894 3.1e-24 115.9 183 43.7
RcHm_v2.0_Chr6g0312181 Rosa chinensis HOM05D005678 ORTHO05D006894 5.2e-24 115.2 180 43.3
BolC3t21115H Brassica oleracea HOM05D005678 ORTHO05D006894 8.9e-24 114.4 127 52.0
Ca_12878_v3 Cicer arietinum L. HOM05D005678 ORTHO05D006894 8.9e-24 114.4 178 44.4
Thhalv10000334m.g Eutrema salsugineum HOM05D005678 ORTHO05D006894 1.5e-23 113.6 85 64.7
Sp4g03460 Schrenkiella parvula HOM05D005678 ORTHO05D006894 5.8e-23 111.7 80 63.8
Aqoxy7G03048 Aquilegia oxysepala HOM05D005678 ORTHO05D006894 9.8e-23 110.9 85 63.5
Sabra18G0000200 Salix brachista HOM05D005678 ORTHO05D006894 1.3e-22 110.5 147 42.9
Pp3c5_240 Physcomitrium patens HOM05D005678 ORTHO05D006894 3.7e-22 109.0 124 47.6
SHI21122 Sapria himalayana HOM05D005678 ORTHO05D006894 1.1e-21 107.5 77 62.3
Os05g0250500 Oryza sativa ssp. japonica HOM05D005678 ORTHO05D006894 7.1e-21 104.8 143 42.7
Pp3c6_27420 Physcomitrium patens HOM05D005678 ORTHO05D006894 7.1e-21 104.8 140 42.9
Aa31LG7G11430 Aethionema arabicum HOM05D005678 ORTHO05D006894 1.2e-20 104.0 189 43.4
MD15G1109600 Malus domestica HOM05D005678 ORTHO05D006894 2.1e-20 103.2 221 39.8
Atru.chr7.2621 Acer truncatum HOM05D005678 ORTHO05D006894 6.0e-20 101.7 175 38.9
SEGI_38696 Sequoiadendron giganteum HOM05D005678 ORTHO05D006894 6.0e-20 101.7 95 52.6
BcaC07g40931 Brassica carinata HOM05D005678 ORTHO05D006894 1.3e-19 100.5 78 60.3
Peaxi162Scf00102g01516 Petunia axillaris HOM05D005678 ORTHO05D006894 4.3e-18 95.5 145 46.2
Hund19398 Selenicereus undatus HOM05D005678 ORTHO05D006894 7.3e-18 94.7 88 51.1
COL.COLO4_19050 Corchorus olitorius HOM05D005678 ORTHO05D006894 8.1e-17 91.3 190 34.2
BcaC01g01095 Brassica carinata HOM05D005678 ORTHO05D006894 1.4e-16 90.5 67 67.2
HPP92_015389 Vanilla planifolia HOM05D005678 ORTHO05D006894 1.2e-15 87.4 176 36.4
Migut.E01115 Erythranthe guttata HOM05D005678 ORTHO05D006894 5.8e-15 85.1 192 35.9
CARHR239240 Cardamine hirsuta HOM05D005678 ORTHO05D006894 7.6e-15 84.7 161 39.1
HPP92_027003 Vanilla planifolia HOM05D005678 ORTHO05D006894 7.6e-15 84.7 183 36.1
Mapoly0188s0010 Marchantia polymorpha HOM05D005678 ORTHO05D006894 1.3e-14 84.0 142 38.0
HanXRQChr04g0118101 Helianthus annuus HOM05D005678 ORTHO05D006894 2.9e-14 82.8 75 52.0
Haze_21702 Corylus avellana HOM05D005678 ORTHO05D006894 3.7e-14 82.4 164 37.8
Migut.E01114 Erythranthe guttata HOM05D005678 ORTHO05D006894 3.2e-13 79.3 84 45.2
Haze_21709 Corylus avellana HOM05D005678 ORTHO05D006894 4.6e-12 75.5 316 27.2
Cre02.g120301 Chlamydomonas reinhardtii HOM05D005678 ORTHO05D006894 8.6e-11 71.2 94 38.3
Rhsim09G0030000 Rhododendron simsii HOM05D005678 ORTHO05D006894 4.3e-10 68.9 191 35.1
C03p88040 Brassica napus HOM05D005678 ORTHO05D006894 2.6e-07 59.7 47 66.0
MELO3C016433.2 Cucumis melo HOM05D005678 ORTHO05D006894 7.6e-07 58.2 44 61.4
CDE07G1371 Ceratophyllum demersum HOM05D005678 ORTHO05D006894 2.2e-06 56.6 132 41.7
Lsat_1_v5_gn_3_22700 Lactuca sativa HOM05D005678 ORTHO05D006894 3.8e-06 55.8 137 40.1


User provided reference genes

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