Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold146G36237 Striga asiatica HOM05D005296 ORTHO05D006452 8.1e-123 443.7 220 100.0
MSTRG.24808 Avicennia marina HOM05D005296 ORTHO05D006452 2.7e-78 295.8 243 62.6
SGA_v2.0_scaffold91G28037 Striga asiatica HOM05D005296 ORTHO05D006452 6.7e-77 291.2 242 61.6
Oeu028323.1 Olea europaea HOM05D005296 ORTHO05D006452 1.5e-76 290.0 245 61.6
Migut.N00068 Erythranthe guttata HOM05D005296 ORTHO05D006452 2.5e-76 289.3 243 61.7
Oeu033815.1 Olea europaea HOM05D005296 ORTHO05D006452 3.3e-76 288.9 245 60.4
SGA_v2.0_scaffold119G32698 Striga asiatica HOM05D005296 ORTHO05D006452 3.3e-76 288.9 244 59.8
CAN.G484.51 Capsicum annuum HOM05D005296 ORTHO05D006452 9.0e-74 280.8 226 61.1
Sopen12g034070 Solanum pennellii HOM05D005296 ORTHO05D006452 1.3e-72 276.9 226 60.6
Solyc12g099400.2 Solanum lycopersicum HOM05D005296 ORTHO05D006452 2.2e-72 276.2 226 60.6
PGSC0003DMG400004702 Solanum tuberosum HOM05D005296 ORTHO05D006452 5.0e-72 275.0 226 59.3
Cc03_g01400 Coffea canephora HOM05D005296 ORTHO05D006452 6.5e-72 274.6 243 56.8
unitig_22.g6340 Utricularia gibba HOM05D005296 ORTHO05D006452 6.5e-72 274.6 243 58.4
FAN07G1138 Fragaria x ananassa HOM05D005296 ORTHO05D006452 1.6e-70 270.0 232 58.6
FvH4_4g18820 Fragaria vesca HOM05D005296 ORTHO05D006452 3.6e-70 268.9 237 57.4
FAN17G2193 Fragaria x ananassa HOM05D005296 ORTHO05D006452 4.6e-70 268.5 232 58.2
GSVIVG01035092001 Vitis vinifera HOM05D005296 ORTHO05D006452 4.6e-70 268.5 232 57.3
ECA240G3796 Erigeron canadensis HOM05D002249 ORTHO05D000452 7.9e-70 267.7 244 56.6
Peaxi162Scf03294g00016 Petunia axillaris HOM05D005296 ORTHO05D006452 1.0e-69 267.3 225 60.0
MD16G1162300 Malus domestica HOM05D005296 ORTHO05D006452 1.8e-69 266.5 232 58.2
vmacro08101 Vaccinium macrocarpon HOM05D005296 ORTHO05D006452 5.1e-69 265.0 238 55.9
Atru.chr4.2920 Acer truncatum HOM05D005296 ORTHO05D006452 8.7e-69 264.2 232 57.8
Prupe.1G129900 Prunus persica HOM05D005296 ORTHO05D006452 1.1e-68 263.8 232 57.3
Haze_01146 Corylus avellana HOM05D005296 ORTHO05D006452 1.9e-68 263.1 226 58.8
RcHm_v2.0_Chr4g0423631 Rosa chinensis HOM05D005296 ORTHO05D006452 3.3e-68 262.3 241 56.4
Hma1.2p1_1352F.1_g277550 Hydrangea macrophylla HOM05D005296 ORTHO05D006452 5.7e-68 261.5 244 54.5
QL06p010871 Quercus lobata HOM05D005296 ORTHO05D006452 1.6e-67 260.0 224 58.9
TAR633G2374 Trochodendron aralioides HOM05D005296 ORTHO05D006452 1.6e-67 260.0 224 57.6
HanXRQChr03g0083871 Helianthus annuus HOM05D005296 ORTHO05D006452 3.7e-67 258.8 224 57.6
THA.LOC104821787 Tarenaya hassleriana HOM05D005296 ORTHO05D006452 3.7e-67 258.8 224 58.9
Cpa.g.sc9.118 Carica papaya HOM05D005296 ORTHO05D006452 6.3e-67 258.1 224 58.5
AT4G16060 Arabidopsis thaliana HOM05D005296 ORTHO05D006452 1.1e-66 257.3 224 58.9
Phvul.009G251800 Phaseolus vulgaris HOM05D005296 ORTHO05D006452 1.4e-66 256.9 227 56.8
Glyma.15G152600 Glycine max HOM05D005296 ORTHO05D006452 2.4e-66 256.1 224 57.1
Potri.010G006000 Populus trichocarpa HOM05D005296 ORTHO05D006452 2.4e-66 256.1 228 56.6
Gorai.002G028900 Gossypium raimondii HOM05D005296 ORTHO05D006452 3.1e-66 255.8 224 56.2
TWI09G1158 Tripterygium wilfordii HOM05D005296 ORTHO05D006452 3.1e-66 255.8 226 57.5
AL7G39130 Arabidopsis lyrata HOM05D005296 ORTHO05D006452 4.1e-66 255.4 224 58.0
Lj3A826T78 Lonicera japonica HOM05D005296 ORTHO05D006452 4.1e-66 255.4 241 54.8
Nitab4.5_0003484g0020 Nicotiana tabacum HOM05D005296 ORTHO05D006452 5.3e-66 255.0 244 54.5
Manes.15G009300 Manihot esculenta HOM05D005296 ORTHO05D006452 6.9e-66 254.6 240 55.4
Aqoxy5G00802 Aquilegia oxysepala HOM05D005296 ORTHO05D006452 9.0e-66 254.2 224 57.1
Ciclev10005508m.g Citrus clementina HOM05D005296 ORTHO05D006452 1.5e-65 253.4 232 57.3
Aa31LG10G6140 Aethionema arabicum HOM05D005296 ORTHO05D006452 2.6e-65 252.7 224 56.7
Carub.0007s2556 Capsella rubella HOM05D005296 ORTHO05D006452 2.6e-65 252.7 224 58.0
Gohir.D01G023502 Gossypium hirsutum HOM05D005296 ORTHO05D006452 2.6e-65 252.7 224 55.8
PSO832G0676 Papaver somniferum HOM05D005296 ORTHO05D006452 2.6e-65 252.7 227 56.8
SalBow5G1780 Salvia bowleyana HOM05D005296 ORTHO05D006452 3.4e-65 252.3 262 54.2
CiPaw.01G144600 Carya illinoinensis HOM05D005296 ORTHO05D006452 4.5e-65 251.9 224 58.0
Cfa015446 Carpinus fangiana HOM05D005296 ORTHO05D006452 5.9e-65 251.5 224 58.0
Sabra10G0005100 Salix brachista HOM05D005296 ORTHO05D006452 7.7e-65 251.1 228 55.7
VMungo1309G1137 Vigna mungo HOM05D005296 ORTHO05D006452 1.0e-64 250.8 254 52.0
Sc13g0006220 Simmondsia chinensis HOM05D005296 ORTHO05D006452 1.3e-64 250.4 226 55.3
Gohir.A01G033200 Gossypium hirsutum HOM05D005296 ORTHO05D006452 1.7e-64 250.0 225 55.1
Lj6g0024924 Lotus japonicus HOM05D005296 ORTHO05D006452 2.2e-64 249.6 223 56.1
CARHR290680 Cardamine hirsuta HOM05D005296 ORTHO05D006452 2.9e-64 249.2 224 56.2
GSVIVG01035093001 Vitis vinifera HOM05D005296 ORTHO05D006452 5.0e-64 248.4 225 55.1
Thhalv10025823m.g Eutrema salsugineum HOM05D005296 ORTHO05D006452 1.1e-63 247.3 224 55.4
arahy.Tifrunner.gnm1.ann1.GJ345V Arachis hypogaea HOM05D005296 ORTHO05D006452 1.4e-63 246.9 224 55.4
BcaC06g32977 Brassica carinata HOM05D005296 ORTHO05D006452 1.4e-63 246.9 224 55.8
Ca_01907_v3 Cicer arietinum L. HOM05D005296 ORTHO05D006452 1.4e-63 246.9 224 55.8
CsaV3_6G022690 Cucumis sativus L. HOM05D005296 ORTHO05D006452 1.9e-63 246.5 226 54.0
BcaC06g33432 Brassica carinata HOM05D005296 ORTHO05D006452 4.2e-63 245.4 232 53.9
Lalb_Chr15g0089391 Lupinus albus HOM05D005296 ORTHO05D006452 4.2e-63 245.4 224 55.8
MBI19_g08248_MAGBIO Magnolia biondii HOM05D005296 ORTHO05D006452 4.2e-63 245.4 224 54.5
BcaC06g33433 Brassica carinata HOM05D005296 ORTHO05D006452 7.2e-63 244.6 224 54.9
Thecc.04G290700 Theobroma cacao HOM05D005296 ORTHO05D006452 7.2e-63 244.6 224 55.8
A03p49510 Brassica napus HOM05D005296 ORTHO05D006452 9.4e-63 244.2 224 54.9
PGR031G1375 Punica granatum HOM05D005296 ORTHO05D006452 9.4e-63 244.2 224 55.8
Sp7g14530 Schrenkiella parvula HOM05D005296 ORTHO05D006452 9.4e-63 244.2 224 54.5
CsaV3_6G022680 Cucumis sativus L. HOM05D005296 ORTHO05D006452 1.2e-62 243.8 226 53.5
Eucgr.A01317 Eucalyptus grandis HOM05D005296 ORTHO05D006452 1.2e-62 243.8 236 52.5
C07p47580 Brassica napus HOM05D005296 ORTHO05D006452 1.6e-62 243.4 224 54.5
BolC7t45282H Brassica oleracea HOM05D005296 ORTHO05D006452 2.1e-62 243.0 232 53.4
Nitab4.5_0000570g0290 Nicotiana tabacum HOM05D005296 ORTHO05D006452 2.7e-62 242.7 226 54.4
AUR62035079 Chenopodium quinoa HOM05D005296 ORTHO05D006452 3.6e-62 242.3 226 54.0
MELO3C021302.2 Cucumis melo HOM05D005296 ORTHO05D006452 4.6e-62 241.9 226 52.7
Nn3g21572 Nelumbo nucifera HOM05D005296 ORTHO05D006452 7.9e-62 241.1 224 55.8
Psat1g156080 Pisum sativum HOM05D005296 ORTHO05D006452 7.9e-62 241.1 224 54.9
Sed0027436 Sechium edule HOM05D005296 ORTHO05D006452 1.0e-61 240.7 226 54.0
TPR.G24643 Trifolium pratense HOM05D005296 ORTHO05D006452 1.4e-61 240.4 224 54.5
AUR62016165 Chenopodium quinoa HOM05D005296 ORTHO05D006452 2.3e-61 239.6 226 53.5
Medtr2g435540 Medicago truncatula HOM05D005296 ORTHO05D006452 3.0e-61 239.2 224 54.9
Os05g0358400 Oryza sativa ssp. japonica HOM05D005296 ORTHO05D006452 3.9e-61 238.8 175 65.1
SEGI_03423 Sequoiadendron giganteum HOM05D005296 ORTHO05D006452 1.1e-60 237.3 226 53.5
Rhsim04G0228000 Rhododendron simsii HOM05D005296 ORTHO05D006452 3.3e-60 235.7 266 49.6
C07p47550 Brassica napus HOM05D005296 ORTHO05D006452 9.7e-60 234.2 245 50.6
Dinv29712 Davidia involucrata HOM05D005296 ORTHO05D000287 1.8e-58 229.9 260 49.2
BraA03t14050Z Brassica rapa HOM05D005296 ORTHO05D006452 3.1e-58 229.2 229 52.4
Zm00001eb346400 Zea mays HOM05D005296 ORTHO05D006452 4.1e-58 228.8 241 50.6
Actinidia40306 Actinidia chinensis HOM05D005296 ORTHO05D006452 5.3e-58 228.4 257 49.0
CsaV3_6G022700 Cucumis sativus L. HOM05D005296 ORTHO05D006452 2.6e-57 226.1 225 49.8
arahy.Tifrunner.gnm1.ann1.28UQCP Arachis hypogaea HOM05D005296 ORTHO05D006452 6.5e-56 221.5 223 48.9
Pp3c24_6150 Physcomitrium patens HOM05D005296 ORTHO05D006452 2.5e-55 219.5 225 51.6
ATR1131G025 Amborella trichopoda HOM05D005296 ORTHO05D006452 1.2e-54 217.2 225 48.9
arahy.Tifrunner.gnm1.ann1.5R3I64 Arachis hypogaea HOM05D005296 ORTHO05D006452 1.6e-54 216.9 223 47.5
ATR0730G096 Amborella trichopoda HOM05D005296 ORTHO05D006452 2.1e-54 216.5 224 48.7
VMungo1215G1937 Vigna mungo HOM05D005296 ORTHO05D006452 7.9e-54 214.5 223 48.9
Lalb_Chr07g0182261 Lupinus albus HOM05D005296 ORTHO05D006452 1.0e-53 214.2 224 47.8
FAN12G2682 Fragaria x ananassa HOM05D005296 ORTHO05D006452 1.1e-52 210.7 240 49.6
Glyma.07G244600 Glycine max HOM05D005296 ORTHO05D006452 1.1e-52 210.7 224 48.2
SMO367G1004 Selaginella moellendorffii HOM05D005296 ORTHO05D006452 4.4e-52 208.8 232 47.8
Mapoly0019s0068 Marchantia polymorpha HOM05D005296 ORTHO05D006452 9.7e-52 207.6 222 50.0
Phvul.003G108300 Phaseolus vulgaris HOM05D005296 ORTHO05D006452 9.7e-52 207.6 224 46.9
Lj4g0000030 Lotus japonicus HOM05D005296 ORTHO05D006452 6.3e-51 204.9 236 44.5
Duzib151G0219 Durio zibethinus HOM05D005296 ORTHO05D006452 1.1e-50 204.1 202 53.5
Ciclev10024287m.g Citrus clementina HOM05D005296 ORTHO05D006452 1.4e-50 203.8 213 50.7
Medtr4g120420 Medicago truncatula HOM05D005296 ORTHO05D006452 3.1e-50 202.6 210 45.2
Ca_21474_v3 Cicer arietinum L. HOM05D005296 ORTHO05D006452 5.3e-50 201.8 210 46.2
ATR0916G003 Amborella trichopoda HOM05D005296 ORTHO05D006452 7.0e-50 201.4 219 46.6
Psat4g024760 Pisum sativum HOM05D005296 ORTHO05D006452 9.1e-50 201.1 210 45.2
TPR.G22773 Trifolium pratense HOM05D005296 ORTHO05D006452 2.2e-48 196.4 175 51.4
ATR1127G052 Amborella trichopoda HOM05D005296 ORTHO05D006452 3.8e-48 195.7 225 44.0
FAN12G3138 Fragaria x ananassa HOM05D005296 ORTHO05D006452 3.8e-48 195.7 163 60.1
AagrBONN_evm.TU.Sc2ySwM_228.710 Anthoceros agrestis HOM05D005296 ORTHO05D006452 4.2e-47 192.2 223 48.0
EL10Ac3g04942 Beta vulgaris HOM05D005296 ORTHO05D006452 3.6e-46 189.1 163 53.4
SHI00197 Sapria himalayana HOM05D005296 ORTHO05D006452 4.8e-43 178.7 182 50.5
MELO3C021303.2 Cucumis melo HOM05D005296 ORTHO05D006452 5.9e-41 171.8 228 41.2
DCAR_002489 Daucus carota HOM05D005296 ORTHO05D006452 3.8e-40 169.1 225 42.2
COL.COLO4_03630 Corchorus olitorius HOM05D005296 ORTHO05D006452 5.0e-40 168.7 223 44.4
ClCG06G004890 Citrullus lanatus HOM05D005296 ORTHO05D006452 9.1e-34 147.9 176 47.2
Hund03087 Selenicereus undatus HOM05D005296 ORTHO05D006452 2.7e-33 146.4 165 49.7
Lsat_1_v5_gn_6_76180 Lactuca sativa HOM05D002249 ORTHO05D002443 4.5e-33 145.6 228 41.2
CSS0013365 Camellia sinensis var. sinensis HOM05D005296 ORTHO05D006452 7.7e-33 144.8 234 39.7
HPP92_006907 Vanilla planifolia HOM05D005296 ORTHO05D006452 2.2e-32 143.3 145 52.4
Duzib212G0376 Durio zibethinus HOM05D005296 ORTHO05D006452 5.5e-31 138.7 175 44.0
CBR_g37153 Chara braunii HOM05D005296 ORTHO05D006452 1.2e-30 137.5 276 34.8
Psat4g063800 Pisum sativum HOM05D005296 ORTHO05D006452 1.4e-29 134.0 111 52.3
SGA_v2.0_scaffold227G43235 Striga asiatica HOM05D005296 ORTHO05D006452 5.7e-28 128.6 125 51.2
CDE08G0885 Ceratophyllum demersum HOM05D005296 ORTHO05D006452 7.5e-28 128.3 148 46.6
PGR031G0664 Punica granatum HOM05D005296 ORTHO05D006452 6.1e-22 108.6 269 32.3
Cre12.g494250 Chlamydomonas reinhardtii HOM05D005296 ORTHO05D006452 2.2e-19 100.1 264 30.3
MCO07G237 Micromonas commoda HOM05D005296 ORTHO05D006452 2.4e-18 96.7 257 31.9
MELO3C034931.2 Cucumis melo HOM05D005296 ORTHO05D006452 1.5e-15 87.4 101 46.5
TPR.G17880 Trifolium pratense HOM05D005296 ORTHO05D006452 3.6e-14 82.8 115 39.1
arahy.Tifrunner.gnm1.ann1.GS2NMQ Arachis hypogaea HOM05D005296 ORTHO05D006452 5.8e-12 75.5 48 64.6
Psat4g063760 Pisum sativum HOM05D005296 ORTHO05D006452 8.3e-11 71.6 100 39.0
CBR_g19333 Chara braunii HOM05D005296 ORTHO05D006452 1.9e-10 70.5 121 37.2
arahy.Tifrunner.gnm1.ann1.GK6QEP Arachis hypogaea HOM05D005296 ORTHO05D006452 4.6e-09 65.9 57 50.9
Ah.04g155180 Amaranthus hybridus HOM05D005296 ORTHO05D006452 6.0e-09 65.5 123 38.2
arahy.Tifrunner.gnm1.ann1.3T38WV Arachis hypogaea HOM05D005296 ORTHO05D006452 3.6e-06 56.2 57 47.4
MD02G1019800 Malus domestica HOM05D005296 ORTHO05D006452 8.1e-06 55.1 72 41.7


User provided reference genes

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