Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold146G36182 Striga asiatica HOM05D005346 ORTHO05D007051 2.4e-128 462.2 244 100.0
SGA_v2.0_scaffold120G32813 Striga asiatica HOM05D002260 ORTHO05D000476 2.0e-90 336.3 244 76.6
MSTRG.25547 Avicennia marina HOM05D005346 ORTHO05D007051 1.9e-88 329.7 247 74.1
Oeu016508.1 Olea europaea HOM05D005346 ORTHO05D007051 2.7e-79 299.3 247 68.8
Migut.E01045 Erythranthe guttata HOM05D005346 ORTHO05D007051 3.3e-77 292.4 254 66.9
SalBow6G4970 Salvia bowleyana HOM05D005346 ORTHO05D007051 5.9e-74 281.6 317 55.5
unitig_749.g13414 Utricularia gibba HOM05D005346 ORTHO05D007051 2.7e-71 272.7 246 63.4
Cc08_g13250 Coffea canephora HOM05D005346 ORTHO05D007051 3.9e-70 268.9 254 64.6
Actinidia02088 Actinidia chinensis HOM05D005346 ORTHO05D007051 4.8e-68 261.9 251 61.8
CAN.G630.80 Capsicum annuum HOM05D005346 ORTHO05D007051 1.4e-67 260.4 256 61.3
Nitab4.5_0012948g0030 Nicotiana tabacum HOM05D005346 ORTHO05D007051 3.1e-67 259.2 257 59.5
Solyc08g079490.4 Solanum lycopersicum HOM05D005346 ORTHO05D007051 4.1e-67 258.8 254 60.6
Sopen08g027860 Solanum pennellii HOM05D005346 ORTHO05D007051 4.1e-67 258.8 253 61.3
CSS0047104 Camellia sinensis var. sinensis HOM05D005346 ORTHO05D007051 2.0e-66 256.5 255 60.4
CSS0033087 Camellia sinensis var. sinensis HOM05D005346 ORTHO05D007051 4.5e-66 255.4 258 61.6
MSTRG.12059 Avicennia marina HOM05D005346 ORTHO05D007051 5.9e-66 255.0 249 63.1
Rhsim07G0101400 Rhododendron simsii HOM05D005346 ORTHO05D007051 5.9e-66 255.0 254 61.8
CSS0010264 Camellia sinensis var. sinensis HOM05D005346 ORTHO05D007051 1.0e-65 254.2 255 60.0
Dinv39076 Davidia involucrata HOM05D005346 ORTHO05D007051 2.9e-65 252.7 254 61.4
Eucgr.E00475 Eucalyptus grandis HOM05D005346 ORTHO05D007051 9.4e-64 247.7 245 60.8
DCAR_006800 Daucus carota HOM05D005346 ORTHO05D007051 8.0e-63 244.6 257 57.2
PGSC0003DMG400003934 Solanum tuberosum HOM05D005346 ORTHO05D007051 3.9e-62 242.3 284 54.2
Peaxi162Scf00271g00130 Petunia axillaris HOM05D005346 ORTHO05D007051 7.4e-61 238.0 245 60.0
Potri.003G115300 Populus trichocarpa HOM05D005346 ORTHO05D007051 1.3e-60 237.3 249 59.4
Haze_09052 Corylus avellana HOM05D005346 ORTHO05D007051 1.7e-60 236.9 244 58.6
Cfa012017 Carpinus fangiana HOM05D005346 ORTHO05D007051 2.2e-60 236.5 244 58.6
Lsat_1_v5_gn_6_9800 Lactuca sativa HOM05D005346 ORTHO05D007051 4.8e-60 235.3 244 55.7
Atru.chr9.1434 Acer truncatum HOM05D005346 ORTHO05D007051 2.4e-59 233.0 256 57.0
GSVIVG01004909001 Vitis vinifera HOM05D005346 ORTHO05D007051 3.1e-59 232.6 251 58.2
HanXRQChr17g0549091 Helianthus annuus HOM05D005346 ORTHO05D007051 5.3e-59 231.9 244 57.0
Cpa.g.sc29.89 Carica papaya HOM05D005346 ORTHO05D007051 7.0e-59 231.5 254 57.5
EL10Ac5g12617 Beta vulgaris HOM05D005346 ORTHO05D007051 3.5e-58 229.2 249 58.6
QL05p030033 Quercus lobata HOM05D005346 ORTHO05D007051 3.5e-58 229.2 246 56.5
QL12p015018 Quercus lobata HOM05D005346 ORTHO05D007051 3.5e-58 229.2 246 56.5
Duzib084G0498 Durio zibethinus HOM05D005346 ORTHO05D007051 4.5e-58 228.8 256 56.2
Manes.01G073500 Manihot esculenta HOM05D005346 ORTHO05D007051 4.5e-58 228.8 252 56.7
AUR62010513 Chenopodium quinoa HOM05D005346 ORTHO05D007051 1.3e-57 227.3 248 58.1
MBI12_g34008_MAGBIO Magnolia biondii HOM05D005346 ORTHO05D007051 1.3e-57 227.3 230 60.0
THA.LOC104809446 Tarenaya hassleriana HOM05D005346 ORTHO05D007051 1.7e-57 226.9 253 55.3
Nn4g26377 Nelumbo nucifera HOM05D005346 ORTHO05D007051 2.9e-57 226.1 248 59.3
AUR62017389 Chenopodium quinoa HOM05D005346 ORTHO05D007051 8.5e-57 224.6 249 57.8
Hma1.2p1_0138F.1_g063170 Hydrangea macrophylla HOM05D005346 ORTHO05D007051 8.5e-57 224.6 194 63.9
Gohir.A03G011800 Gossypium hirsutum HOM05D005346 ORTHO05D007051 1.9e-56 223.4 247 55.5
TAR629G0356 Trochodendron aralioides HOM05D005346 ORTHO05D007051 3.2e-56 222.6 198 64.1
CiPaw.12G104700 Carya illinoinensis HOM05D005346 ORTHO05D007051 4.2e-56 222.2 246 57.7
Gorai.003G166600 Gossypium raimondii HOM05D005346 ORTHO05D007051 4.2e-56 222.2 247 55.9
PGR042G0462 Punica granatum HOM05D005346 ORTHO05D007051 4.2e-56 222.2 246 56.1
Lj4g0017997 Lotus japonicus HOM05D005346 ORTHO05D007051 5.5e-56 221.9 217 59.9
PSO782G1275 Papaver somniferum HOM05D005346 ORTHO05D007051 7.2e-56 221.5 251 55.4
Sc22g0000580 Simmondsia chinensis HOM05D005346 ORTHO05D007051 9.4e-56 221.1 253 55.3
CANSAT21G2498 Cannabis sativa HOM05D005346 ORTHO05D007051 1.2e-55 220.7 252 56.0
Potri.001G117500 Populus trichocarpa HOM05D005346 ORTHO05D007051 1.2e-55 220.7 248 55.2
PSO478G1917 Papaver somniferum HOM05D005346 ORTHO05D007051 1.6e-55 220.3 244 54.5
arahy.Tifrunner.gnm1.ann1.FP1HKG Arachis hypogaea HOM05D005346 ORTHO05D007051 2.1e-55 219.9 251 54.6
Sabra03G0079900 Salix brachista HOM05D005346 ORTHO05D007051 2.7e-55 219.5 210 61.4
ECA233G1833 Erigeron canadensis HOM05D005346 ORTHO05D007051 3.6e-55 219.2 193 64.2
ATR0579G161 Amborella trichopoda HOM05D005346 ORTHO05D007051 4.7e-55 218.8 194 63.9
TWI60G0731 Tripterygium wilfordii HOM05D005346 ORTHO05D007051 4.7e-55 218.8 254 53.9
Lj8A255T54 Lonicera japonica HOM05D005346 ORTHO05D007051 8.0e-55 218.0 265 52.8
FvH4_5g00690 Fragaria vesca HOM05D005346 ORTHO05D007051 1.4e-54 217.2 203 61.1
RcHm_v2.0_Chr7g0201521 Rosa chinensis HOM05D005346 ORTHO05D007051 1.4e-54 217.2 244 55.3
vmacro14041 Vaccinium macrocarpon HOM05D005346 ORTHO05D007051 1.8e-54 216.9 228 58.3
Glyma.17G135200 Glycine max HOM05D005346 ORTHO05D007051 2.3e-54 216.5 241 55.6
FAN04G2793 Fragaria x ananassa HOM05D000062 ORTHO05D007051 4.0e-54 215.7 203 61.1
Medtr4g102230 Medicago truncatula HOM05D005346 ORTHO05D007051 4.0e-54 215.7 237 56.5
Sabra01G0090200 Salix brachista HOM05D005346 ORTHO05D007051 4.0e-54 215.7 182 66.5
Psat4g068640 Pisum sativum HOM05D005346 ORTHO05D007051 5.2e-54 215.3 237 56.1
Ciclev10021953m.g Citrus clementina HOM05D005346 ORTHO05D007051 6.7e-54 214.9 253 53.4
COL.COLO4_23877 Corchorus olitorius HOM05D005346 ORTHO05D007051 6.7e-54 214.9 235 54.9
Lalb_Chr05g0225391 Lupinus albus HOM05D005346 ORTHO05D007051 6.7e-54 214.9 195 62.1
MD04G1079400 Malus domestica HOM05D005346 ORTHO05D007051 6.7e-54 214.9 244 56.6
SGA_v2.0_scaffold196G40944 Striga asiatica HOM05D005346 ORTHO05D007051 6.7e-54 214.9 205 60.0
FAN13G0616 Fragaria x ananassa HOM05D005346 ORTHO05D007051 8.8e-54 214.5 203 60.6
VMungo1215G1290 Vigna mungo HOM05D005346 ORTHO05D007051 8.8e-54 214.5 195 62.1
Zm00001eb010680 Zea mays HOM05D005346 ORTHO05D007051 1.2e-53 214.2 198 61.6
Carub.0002s0213 Capsella rubella HOM05D005346 ORTHO05D007051 2.0e-53 213.4 252 51.6
Thhalv10023661m.g Eutrema salsugineum HOM05D005346 ORTHO05D007051 2.0e-53 213.4 250 53.6
Sed0008355 Sechium edule HOM05D005346 ORTHO05D007051 2.0e-53 213.4 269 51.7
Prupe.5G079700 Prunus persica HOM05D005346 ORTHO05D007051 2.6e-53 213.0 245 54.7
CDE11G0613 Ceratophyllum demersum HOM05D005346 ORTHO05D007051 5.7e-53 211.8 198 60.1
BcaB07g31363 Brassica carinata HOM05D005346 ORTHO05D007051 9.7e-53 211.1 197 58.4
AT1G62850 Arabidopsis thaliana HOM05D005346 ORTHO05D007051 2.2e-52 209.9 251 51.0
BcaC04g22452 Brassica carinata HOM05D005346 ORTHO05D007051 2.2e-52 209.9 252 52.0
BolC9t54826H Brassica oleracea HOM05D005346 ORTHO05D007051 2.2e-52 209.9 252 52.4
AL2G12910 Arabidopsis lyrata HOM05D005346 ORTHO05D007051 3.7e-52 209.1 252 51.2
A09p15920 Brassica napus HOM05D005346 ORTHO05D007051 4.8e-52 208.8 248 52.8
BraA09t37228Z Brassica rapa HOM05D005346 ORTHO05D007051 4.8e-52 208.8 248 52.8
HPP92_003521 Vanilla planifolia HOM05D005346 ORTHO05D007051 4.8e-52 208.8 233 54.1
Hund28689 Selenicereus undatus HOM05D005346 ORTHO05D007051 6.3e-52 208.4 194 62.9
Hund28691 Selenicereus undatus HOM05D005346 ORTHO05D007051 6.3e-52 208.4 194 62.9
Phvul.003G215000 Phaseolus vulgaris HOM05D005346 ORTHO05D007051 1.1e-51 207.6 239 53.6
C09p19170 Brassica napus HOM05D005346 ORTHO05D007051 1.4e-51 207.2 252 51.6
Aa31LG2G370 Aethionema arabicum HOM05D005346 ORTHO05D007051 4.1e-51 205.7 248 51.6
CARHR048890 Cardamine hirsuta HOM05D005346 ORTHO05D007051 7.0e-51 204.9 249 51.0
MELO3C013984.2 Cucumis melo HOM05D005346 ORTHO05D007051 1.6e-50 203.8 248 54.0
TAR629G0085 Trochodendron aralioides HOM05D005346 ORTHO05D007051 1.6e-50 203.8 188 61.7
Aqoxy7G00648 Aquilegia oxysepala HOM05D005346 ORTHO05D007051 2.7e-50 203.0 252 52.0
CsaV3_3G003190 Cucumis sativus L. HOM05D005346 ORTHO05D007051 4.5e-50 202.2 248 52.8
Sp2g01760 Schrenkiella parvula HOM05D005346 ORTHO05D007051 5.9e-50 201.8 255 50.6
Pp3c9_5680 Physcomitrium patens HOM05D005346 ORTHO05D007051 6.1e-47 191.8 193 56.5
Glyma.05G052900 Glycine max HOM05D005346 ORTHO05D007051 1.4e-46 190.7 169 63.3
SalBow1G0489 Salvia bowleyana HOM05D005346 ORTHO05D007051 1.4e-46 190.7 217 55.3
Ca_12281_v3 Cicer arietinum L. HOM05D002260 ORTHO05D007051 2.3e-46 189.9 174 62.1
SEGI_23485 Sequoiadendron giganteum HOM05D005346 ORTHO05D007051 2.6e-45 186.4 179 57.5
Os03g0249200 Oryza sativa ssp. japonica HOM05D005346 ORTHO05D007051 7.0e-43 178.3 194 55.2
Migut.E01266 Erythranthe guttata HOM05D005346 ORTHO05D007051 4.5e-42 175.6 148 66.2
TPR.G37664 Trifolium pratense HOM05D005346 ORTHO05D007051 2.9e-41 172.9 172 58.7
Thecc.03G262000 Theobroma cacao HOM05D005346 ORTHO05D007051 1.5e-40 170.6 196 52.0
ClCG10G003160 Citrullus lanatus HOM05D005346 ORTHO05D007051 4.2e-40 169.1 265 47.9
CBR_g59652 Chara braunii HOM05D005346 ORTHO05D007051 1.4e-38 164.1 162 56.2
SEGI_25852 Sequoiadendron giganteum HOM05D005346 ORTHO05D007051 4.0e-38 162.5 134 70.1
Gohir.D03G158100 Gossypium hirsutum HOM05D005346 ORTHO05D007051 2.0e-34 150.2 247 44.1
Mapoly0185s0016 Marchantia polymorpha HOM05D005346 ORTHO05D007051 2.0e-34 150.2 184 48.9
Gorai.005G179200 Gossypium raimondii HOM05D005346 ORTHO05D007051 2.0e-26 123.6 147 48.3
arahy.Tifrunner.gnm1.ann1.IL3HUZ Arachis hypogaea HOM05D005346 ORTHO05D007051 3.5e-26 122.9 333 35.1
Nitab4.5_0001816g0160 Nicotiana tabacum HOM05D005346 ORTHO05D020323 2.3e-25 120.2 162 46.9
Gorai.002G177500 Gossypium raimondii HOM05D005346 ORTHO05D007051 6.6e-25 118.6 98 61.2
Gorai.011G192800 Gossypium raimondii HOM05D005346 ORTHO05D007051 1.5e-24 117.5 101 59.4
Actinidia14465 Actinidia chinensis HOM05D005346 ORTHO05D007051 2.5e-24 116.7 229 41.0
Cre02.g101800 Chlamydomonas reinhardtii HOM05D005346 ORTHO05D007051 7.3e-24 115.2 145 47.6
Gohir.D06G129850 Gossypium hirsutum HOM05D005346 ORTHO05D007051 2.8e-23 113.2 101 56.4
PRCOL_00004903 Prasinoderma coloniale HOM05D005346 ORTHO05D007051 2.8e-23 113.2 132 48.5
Sopen08g003450 Solanum pennellii HOM05D005346 ORTHO05D020323 1.1e-22 111.3 254 37.0
Nitab4.5_0001265g0030 Nicotiana tabacum HOM05D005346 ORTHO05D020323 1.4e-22 110.9 260 35.4
Solyc08g007490.3 Solanum lycopersicum HOM05D005346 ORTHO05D020323 1.4e-22 110.9 254 37.0
Peaxi162Scf00102g01240 Petunia axillaris HOM05D005346 ORTHO05D020323 1.8e-22 110.5 224 37.5
MCO12G072 Micromonas commoda HOM05D005346 ORTHO05D007051 1.2e-21 107.8 125 48.0
SMO164G0226 Selaginella moellendorffii HOM05D005346 ORTHO05D007051 3.4e-21 106.3 162 44.4
AagrBONN_evm.TU.Sc2ySwM_369.472 Anthoceros agrestis HOM05D005346 ORTHO05D007051 1.3e-20 104.4 106 52.8
VMungo1215G3342 Vigna mungo HOM05D005346 ORTHO05D007051 1.9e-19 100.5 106 58.5
Gohir.D13G182400 Gossypium hirsutum HOM05D005346 ORTHO05D007051 4.1e-19 99.4 75 65.3
SMO353G0412 Selaginella moellendorffii HOM05D000596 ORTHO05D001497 4.6e-18 95.9 172 39.0
SEGI_00698 Sequoiadendron giganteum HOM05D005346 ORTHO05D007051 1.1e-16 91.3 87 58.6
Migut.H01199 Erythranthe guttata HOM05D005346 ORTHO05D007051 8.1e-15 85.1 103 53.4
CAN.G1394.34 Capsicum annuum HOM05D005346 ORTHO05D020323 1.4e-14 84.3 118 46.6
Haze_26312 Corylus avellana HOM05D005346 ORTHO05D007051 1.8e-14 84.0 143 38.5
SMO364G0639 Selaginella moellendorffii HOM05D000596 ORTHO05D001497 4.9e-12 75.9 145 35.9
Lj6g0026400 Lotus japonicus HOM05D005346 ORTHO05D007051 3.3e-08 63.2 50 68.0
PGSC0003DMG400012509 Solanum tuberosum HOM05D005346 ORTHO05D020323 2.1e-07 60.5 193 32.1
TPR.G941 Trifolium pratense HOM05D005346 ORTHO05D007051 3.1e-06 56.6 53 64.2


User provided reference genes

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