Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold146G36178 Striga asiatica HOM05D004508 ORTHO05D005180 3.9e-229 797.7 394 100.0
SGA_v2.0_scaffold25G11118 Striga asiatica HOM05D004508 ORTHO05D005180 4.8e-227 790.8 394 99.0
MSTRG.12061 Avicennia marina HOM05D004508 ORTHO05D005180 2.1e-169 599.4 392 74.2
SalBow5G3960 Salvia bowleyana HOM05D004508 ORTHO05D005180 2.1e-169 599.4 382 76.2
SalBow5G2183 Salvia bowleyana HOM05D004508 ORTHO05D005180 6.0e-169 597.8 382 76.2
Nitab4.5_0003534g0110 Nicotiana tabacum HOM05D004508 ORTHO05D005180 6.9e-157 557.8 395 71.4
Rhsim07G0101600 Rhododendron simsii HOM05D004508 ORTHO05D005180 5.8e-156 554.7 371 70.9
Dinv37763 Davidia involucrata HOM05D004508 ORTHO05D005180 1.7e-155 553.1 374 71.9
Solyc08g079470.3 Solanum lycopersicum HOM05D004508 ORTHO05D005180 2.9e-155 552.4 399 70.7
PGSC0003DMG400003935 Solanum tuberosum HOM05D004508 ORTHO05D005180 3.8e-155 552.0 359 75.2
Actinidia27434 Actinidia chinensis HOM05D004508 ORTHO05D005180 1.1e-154 550.4 395 68.9
Nitab4.5_0005465g0020 Nicotiana tabacum HOM05D004508 ORTHO05D005180 1.1e-154 550.4 395 70.4
Hma1.2p1_0108F.1_g051860 Hydrangea macrophylla HOM05D004508 ORTHO05D005180 3.2e-154 548.9 370 70.5
Thecc.03G261800 Theobroma cacao HOM05D004508 ORTHO05D005180 6.0e-153 544.7 374 71.1
Sopen08g027840 Solanum pennellii HOM05D004508 ORTHO05D005180 1.7e-152 543.1 359 74.1
TAR374G1167 Trochodendron aralioides HOM05D004508 ORTHO05D005180 1.7e-152 543.1 359 73.5
CSS0042805 Camellia sinensis var. sinensis HOM05D004508 ORTHO05D005180 1.9e-151 539.7 394 67.3
vmacro14042 Vaccinium macrocarpon HOM05D004508 ORTHO05D005180 1.9e-151 539.7 367 70.3
Cpa.g.sc29.91 Carica papaya HOM05D004508 ORTHO05D005180 3.3e-151 538.9 371 70.9
Cc08_g13230 Coffea canephora HOM05D004508 ORTHO05D005180 3.3e-151 538.9 361 72.0
HanXRQChr17g0549071 Helianthus annuus HOM05D004508 ORTHO05D005180 3.3e-151 538.9 368 71.7
Prupe.5G079500 Prunus persica HOM05D004508 ORTHO05D005180 7.3e-151 537.7 392 67.3
CiPaw.11G147500 Carya illinoinensis HOM05D004508 ORTHO05D005180 9.6e-151 537.3 394 67.5
Nitab4.5_0007591g0010 Nicotiana tabacum HOM05D004508 ORTHO05D005180 1.3e-150 537.0 395 68.9
Hma1.2p1_1654F.1_g295900 Hydrangea macrophylla HOM05D004508 ORTHO05D005180 1.6e-150 536.6 374 69.5
Manes.01G073700 Manihot esculenta HOM05D004508 ORTHO05D005180 2.8e-150 535.8 389 69.4
QL12p014971 Quercus lobata HOM05D004508 ORTHO05D005180 2.8e-150 535.8 377 69.5
CAN.G630.82 Capsicum annuum HOM05D004508 ORTHO05D005180 6.2e-150 534.6 394 68.5
CSS0027133 Camellia sinensis var. sinensis HOM05D004508 ORTHO05D005180 1.1e-149 533.9 360 70.8
Lj8C255T7 Lonicera japonica HOM05D004508 ORTHO05D005180 1.1e-149 533.9 374 70.3
Duzib205G1463 Durio zibethinus HOM05D004508 ORTHO05D005180 2.4e-149 532.7 365 71.2
Hund14651 Selenicereus undatus HOM05D004508 ORTHO05D005180 2.6e-148 529.3 377 69.0
RcHm_v2.0_Chr4g0419741 Rosa chinensis HOM05D004508 ORTHO05D005180 5.8e-148 528.1 369 68.3
FvH4_5g00670 Fragaria vesca HOM05D004508 ORTHO05D005180 9.9e-148 527.3 371 67.9
Lsat_1_v5_gn_3_3920 Lactuca sativa HOM05D004508 ORTHO05D005180 9.9e-148 527.3 379 69.9
arahy.Tifrunner.gnm1.ann1.CN31X8 Arachis hypogaea HOM05D004508 ORTHO05D005180 1.3e-147 526.9 375 67.7
ClCG10G003140 Citrullus lanatus HOM05D004508 ORTHO05D005180 1.7e-147 526.6 391 66.8
Potri.001G117700 Populus trichocarpa HOM05D004508 ORTHO05D005180 1.7e-147 526.6 363 71.3
EL10Ac5g12616 Beta vulgaris HOM05D004508 ORTHO05D005180 2.2e-147 526.2 372 67.2
FAN08G3098 Fragaria x ananassa HOM05D004508 ORTHO05D005180 2.2e-147 526.2 371 67.7
Lj2g0024595 Lotus japonicus HOM05D004508 ORTHO05D005180 2.2e-147 526.2 383 67.1
Gohir.D12G223300 Gossypium hirsutum HOM05D004508 ORTHO05D005180 4.9e-147 525.0 387 66.7
FAN18G1402 Fragaria x ananassa HOM05D004508 ORTHO05D005180 8.4e-147 524.2 371 67.7
Ca_16218_v3 Cicer arietinum L. HOM05D004508 ORTHO05D005180 1.1e-146 523.9 371 67.9
CANSAT21G2188 Cannabis sativa HOM05D004508 ORTHO05D005180 1.4e-146 523.5 382 66.2
Gohir.A12G221000 Gossypium hirsutum HOM05D004508 ORTHO05D005180 1.4e-146 523.5 387 66.4
Gorai.008G239600 Gossypium raimondii HOM05D004508 ORTHO05D005180 1.9e-146 523.1 387 66.4
Haze_02980 Corylus avellana HOM05D004508 ORTHO05D005180 2.4e-146 522.7 398 66.1
arahy.Tifrunner.gnm1.ann1.VMS6QR Arachis hypogaea HOM05D004508 ORTHO05D005180 3.2e-146 522.3 375 66.9
Medtr3g078637 Medicago truncatula HOM05D004508 ORTHO05D005180 3.2e-146 522.3 369 67.5
Sc07g0009440 Simmondsia chinensis HOM05D004508 ORTHO05D005180 4.2e-146 521.9 376 68.4
FAN04G0404 Fragaria x ananassa HOM05D004508 ORTHO05D005180 5.4e-146 521.5 369 67.2
Glyma.11G029800 Glycine max HOM05D004508 ORTHO05D005180 5.4e-146 521.5 379 66.8
FAN13G3174 Fragaria x ananassa HOM05D004508 ORTHO05D005180 1.2e-145 520.4 369 66.7
Eucgr.D01989 Eucalyptus grandis HOM05D004508 ORTHO05D005180 2.1e-145 519.6 367 68.4
RcHm_v2.0_Chr7g0201591 Rosa chinensis HOM05D004508 ORTHO05D005180 2.1e-145 519.6 369 67.8
MD04G1079500 Malus domestica HOM05D004508 ORTHO05D005180 3.5e-145 518.8 380 66.6
Sp6g05370 Schrenkiella parvula HOM05D004508 ORTHO05D005180 3.5e-145 518.8 378 66.7
Aa31LG9G10340 Aethionema arabicum HOM05D004508 ORTHO05D005180 7.9e-145 517.7 367 67.3
Sed0020035 Sechium edule HOM05D004508 ORTHO05D005180 7.9e-145 517.7 367 67.3
Phvul.002G060100 Phaseolus vulgaris HOM05D004508 ORTHO05D005180 2.3e-144 516.2 391 65.0
Aa31LG11G5140 Aethionema arabicum HOM05D004508 ORTHO05D005180 3.0e-144 515.8 367 67.0
unitig_8.g3903 Utricularia gibba HOM05D004508 ORTHO05D005180 3.9e-144 515.4 361 68.4
GSVIVG01004911001 Vitis vinifera HOM05D004508 ORTHO05D005180 3.9e-144 515.4 359 71.0
Peaxi162Scf00271g00023 Petunia axillaris HOM05D004508 ORTHO05D005180 1.5e-143 513.5 372 69.6
CsaV3_3G003200 Cucumis sativus L. HOM05D004508 ORTHO05D005180 2.5e-143 512.7 392 64.8
CARHR254050 Cardamine hirsuta HOM05D004508 ORTHO05D005180 3.3e-143 512.3 394 64.7
BcaB01g01727 Brassica carinata HOM05D004508 ORTHO05D005180 7.4e-143 511.1 386 64.0
ECA246G1898 Erigeron canadensis HOM05D004508 ORTHO05D005180 7.4e-143 511.1 373 66.5
Aa31LG11G5170 Aethionema arabicum HOM05D004508 ORTHO05D005180 9.6e-143 510.8 379 65.4
TWI81G0341 Tripterygium wilfordii HOM05D004508 ORTHO05D005180 1.6e-142 510.0 387 66.7
BraA03t12150Z Brassica rapa HOM05D004508 ORTHO05D005180 2.1e-142 509.6 369 66.7
BcaC04g21205 Brassica carinata HOM05D004508 ORTHO05D005180 1.4e-141 506.9 389 63.8
C09p34340 Brassica napus HOM05D004508 ORTHO05D005180 1.4e-141 506.9 389 63.8
BolC9t56277H Brassica oleracea HOM05D004508 ORTHO05D005180 1.4e-141 506.9 389 63.8
Ciclev10020216m.g Citrus clementina HOM05D004508 ORTHO05D005180 1.4e-141 506.9 402 63.4
AT4G12130 Arabidopsis thaliana HOM05D004508 ORTHO05D005180 4.0e-141 505.4 376 64.9
BcaB01g02657 Brassica carinata HOM05D004508 ORTHO05D005180 4.0e-141 505.4 384 64.6
Ah.12g058230 Amaranthus hybridus HOM05D004508 ORTHO05D005180 5.3e-141 505.0 374 64.4
A09p27030 Brassica napus HOM05D004508 ORTHO05D005180 6.9e-141 504.6 388 63.4
BraA09t38274Z Brassica rapa HOM05D004508 ORTHO05D005180 6.9e-141 504.6 388 63.4
PSO782G0229 Papaver somniferum HOM05D004508 ORTHO05D005180 6.9e-141 504.6 393 63.9
Atru.chr9.1431 Acer truncatum HOM05D004508 ORTHO05D005180 9.0e-141 504.2 372 66.9
Thhalv10028714m.g Eutrema salsugineum HOM05D004508 ORTHO05D005180 9.0e-141 504.2 381 65.1
BolC3t15891H Brassica oleracea HOM05D004508 ORTHO05D005180 1.5e-140 503.4 382 63.9
Carub.0006s3132 Capsella rubella HOM05D004508 ORTHO05D005180 1.5e-140 503.4 375 65.1
AL6G47050 Arabidopsis lyrata HOM05D004508 ORTHO05D005180 5.8e-140 501.5 376 64.1
BcaC01g04604 Brassica carinata HOM05D004508 ORTHO05D005180 8.4e-139 497.7 375 65.1
PGR031G2216 Punica granatum HOM05D004508 ORTHO05D005180 1.4e-138 496.9 369 65.6
Gorai.003G166400 Gossypium raimondii HOM05D004508 ORTHO05D005180 3.2e-138 495.7 364 68.7
TWI60G0362 Tripterygium wilfordii HOM05D004508 ORTHO05D005180 3.2e-138 495.7 360 67.2
ECA234G2416 Erigeron canadensis HOM05D004508 ORTHO05D005180 2.7e-137 492.7 359 66.3
CDE04G2826 Ceratophyllum demersum HOM05D004508 ORTHO05D005180 4.6e-137 491.9 386 61.1
Oeu016511.2 Olea europaea HOM05D004508 ORTHO05D005180 7.9e-137 491.1 383 64.8
VMungo1215G0237 Vigna mungo HOM05D004508 ORTHO05D005180 1.8e-136 490.0 376 64.1
Lj4g0011407 Lotus japonicus HOM05D004508 ORTHO05D005180 1.9e-135 486.5 376 64.4
HPP92_014947 Vanilla planifolia HOM05D004508 ORTHO05D005180 3.7e-134 482.3 382 60.7
HPP92_014982 Vanilla planifolia HOM05D004508 ORTHO05D005180 3.7e-134 482.3 382 60.7
AUR62010510 Chenopodium quinoa HOM05D004508 ORTHO05D005180 5.3e-133 478.4 366 63.7
ATR0757G012 Amborella trichopoda HOM05D004508 ORTHO05D005180 4.5e-132 475.3 367 63.2
COL.COLO4_23880 Corchorus olitorius HOM05D004508 ORTHO05D005180 3.8e-131 472.2 373 63.0
Lalb_Chr25g0283101 Lupinus albus HOM05D004508 ORTHO05D005180 1.9e-130 469.9 375 60.0
PSO478G4546 Papaver somniferum HOM05D004508 ORTHO05D005180 2.1e-129 466.5 463 53.6
C03p35810 Brassica napus HOM05D004508 ORTHO05D005180 2.8e-126 456.1 349 64.2
Sabra01G0090400 Salix brachista HOM05D004508 ORTHO05D005180 2.8e-126 456.1 365 63.8
Os06g0134800 Oryza sativa ssp. japonica HOM05D004508 ORTHO05D005180 1.8e-125 453.4 386 59.1
SEGI_30484 Sequoiadendron giganteum HOM05D004508 ORTHO05D005180 2.9e-123 446.0 389 57.1
Zm00001eb377920 Zea mays HOM05D004508 ORTHO05D005180 3.6e-121 439.1 374 58.3
Migut.A00834 Erythranthe guttata HOM05D004508 ORTHO05D005180 8.5e-115 417.9 271 76.4
Pp3c2_10920 Physcomitrium patens HOM05D004508 ORTHO05D005180 3.6e-113 412.5 370 54.1
Pp3c14_15790 Physcomitrium patens HOM05D004508 ORTHO05D005180 1.8e-112 410.2 370 54.1
Nn2g12338 Nelumbo nucifera HOM05D004508 ORTHO05D005180 2.3e-112 409.8 291 69.8
Psat5g109880 Pisum sativum HOM05D004508 ORTHO05D005180 6.7e-112 408.3 290 67.6
Psat1g081320 Pisum sativum HOM05D004508 ORTHO05D005180 4.4e-111 405.6 290 66.9
AagrBONN_evm.TU.Sc2ySwM_344.736 Anthoceros agrestis HOM05D004508 ORTHO05D005180 2.4e-109 399.8 372 54.6
MBI04_g30221_MAGBIO Magnolia biondii HOM05D004508 ORTHO05D005180 5.3e-109 398.7 618 40.3
SMO165G0061 Selaginella moellendorffii HOM05D004508 ORTHO05D005180 3.2e-106 389.4 372 53.0
CiPaw.12G105000 Carya illinoinensis HOM05D004508 ORTHO05D005180 7.2e-106 388.3 373 55.8
Mapoly0014s0047 Marchantia polymorpha HOM05D004508 ORTHO05D005180 9.4e-106 387.9 372 51.6
SMO230G0075 Selaginella moellendorffii HOM05D004508 ORTHO05D005180 2.3e-104 383.3 370 51.6
Dinv39078 Davidia involucrata HOM05D004508 ORTHO05D005180 3.0e-104 382.9 354 56.8
Glyma.01G212000 Glycine max HOM05D004508 ORTHO05D005180 2.0e-103 380.2 251 72.5
C07p28450 Brassica napus HOM05D004508 ORTHO05D005180 1.3e-102 377.5 261 67.0
Oeu022318.1 Olea europaea HOM05D004508 ORTHO05D005180 2.2e-102 376.7 251 72.9
VMungo1215G2974 Vigna mungo HOM05D004508 ORTHO05D005180 1.0e-99 367.9 245 70.2
BolC7t43385H Brassica oleracea HOM05D004508 ORTHO05D005180 2.8e-94 349.7 241 66.8
A03p29560 Brassica napus HOM05D004508 ORTHO05D005180 3.7e-94 349.4 241 66.8
BcaC06g34438 Brassica carinata HOM05D004508 ORTHO05D005180 4.8e-94 349.0 242 66.5
AagrBONN_evm.TU.Sc2ySwM_344.739 Anthoceros agrestis HOM05D004508 ORTHO05D005180 6.3e-94 348.6 372 50.3
AUR62017391 Chenopodium quinoa HOM05D004508 ORTHO05D005180 3.5e-92 342.8 229 69.4
PSO017G0573 Papaver somniferum HOM05D004508 ORTHO05D005180 1.5e-90 337.4 243 65.0
CBR_g46688 Chara braunii HOM05D004508 ORTHO05D005180 4.4e-87 325.9 390 45.6
Gohir.D03G157900 Gossypium hirsutum HOM05D004508 ORTHO05D005180 4.0e-80 302.8 245 64.5
Eucgr.D02019 Eucalyptus grandis HOM05D004508 ORTHO05D005180 1.4e-77 294.3 358 45.3
MELO3C013985.2 Cucumis melo HOM05D004508 ORTHO05D005180 1.8e-77 293.9 190 71.6
TPR.G214 Trifolium pratense HOM05D004508 ORTHO05D005180 1.3e-62 244.6 156 73.1
Lsat_1_v5_gn_3_76480 Lactuca sativa HOM05D004508 ORTHO05D005180 7.1e-53 212.2 217 53.5
Gohir.A03G011900 Gossypium hirsutum HOM05D004508 ORTHO05D005180 2.7e-52 210.3 278 48.6
AagrBONN_evm.TU.Sc2ySwM_344.731 Anthoceros agrestis HOM05D004508 ORTHO05D005180 1.6e-49 201.1 214 47.7
vmacro17466 Vaccinium macrocarpon HOM05D004508 ORTHO05D005180 1.6e-49 201.1 123 74.8
MELO3C021762.2 Cucumis melo HOM05D004508 ORTHO05D005180 3.8e-38 163.3 115 66.1
VMungo1215G1224 Vigna mungo HOM05D004508 ORTHO05D005180 9.3e-37 158.7 150 54.0
Duzib084G0179 Durio zibethinus HOM05D004508 ORTHO05D005180 6.0e-36 156.0 156 52.6
MCO07G558 Micromonas commoda HOM05D004508 ORTHO05D005180 2.8e-33 147.1 401 30.9
Nn8g40647 Nelumbo nucifera HOM05D004508 ORTHO05D005180 1.8e-32 144.4 174 48.9
CSS0024785 Camellia sinensis var. sinensis HOM05D004508 ORTHO05D005180 2.4e-32 144.1 106 64.2
PRCOL_00002067 Prasinoderma coloniale HOM05D004508 ORTHO05D005180 4.2e-29 133.3 371 29.4
Cre10.g459000 Chlamydomonas reinhardtii HOM05D004508 ORTHO05D005180 1.3e-27 128.3 296 31.8
SGA_v2.0_scaffold120G32815 Striga asiatica HOM05D004508 ORTHO05D005180 1.3e-25 121.7 77 75.3
BolC6t40022H Brassica oleracea HOM05D004508 ORTHO05D005180 8.4e-22 109.0 102 53.9
BolC7t43387H Brassica oleracea HOM05D004508 ORTHO05D005180 3.2e-21 107.1 94 57.4
Cfa023844 Carpinus fangiana HOM05D004508 ORTHO05D005180 7.1e-21 105.9 324 28.4
C03p35830 Brassica napus HOM05D004508 ORTHO05D005180 4.6e-20 103.2 94 55.3
C07p28470 Brassica napus HOM05D004508 ORTHO05D005180 5.1e-19 99.8 94 54.3
BcaC06g35234 Brassica carinata HOM05D004508 ORTHO05D005180 5.6e-18 96.3 70 62.9
BolC3t15892H Brassica oleracea HOM05D004508 ORTHO05D005180 1.5e-10 71.6 52 61.5
BcaC06g34436 Brassica carinata HOM05D004508 ORTHO05D005180 3.7e-09 67.0 50 58.0
CDE04G3100 Ceratophyllum demersum HOM05D004508 ORTHO05D005180 4.8e-09 66.6 59 49.2
BolC3t15893H Brassica oleracea HOM05D004508 ORTHO05D005180 9.0e-08 62.4 43 55.8
MELO3C035473.2 Cucumis melo HOM05D040713 ORTHO05D005180 1.2e-07 62.0 43 67.4


User provided reference genes

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