Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold146G36157 Striga asiatica HOM05D004155 ORTHO05D004837 7.8e-155 550.4 281 100.0
SGA_v2.0_scaffold120G32880 Striga asiatica HOM05D004155 ORTHO05D004837 3.8e-101 372.1 244 82.8
MSTRG.12099 Avicennia marina HOM05D004155 ORTHO05D004837 1.7e-96 356.7 278 71.2
MSTRG.25524 Avicennia marina HOM05D004155 ORTHO05D004837 2.4e-95 352.8 257 73.5
Lj2A217G31 Lonicera japonica HOM05D004155 ORTHO05D004837 8.5e-93 344.4 249 74.3
Sopen06g020840 Solanum pennellii HOM05D004155 ORTHO05D004837 1.9e-92 343.2 250 74.0
PGSC0003DMG400011880 Solanum tuberosum HOM05D004155 ORTHO05D004837 1.9e-92 343.2 250 74.0
Solyc06g060720.3 Solanum lycopersicum HOM05D004155 ORTHO05D004837 7.2e-92 341.3 250 73.6
Cc08_g12420 Coffea canephora HOM05D004155 ORTHO05D004837 3.6e-91 339.0 251 72.1
Oeu026407.1 Olea europaea HOM05D004155 ORTHO05D004837 6.1e-91 338.2 262 70.2
SalBow5G4949 Salvia bowleyana HOM05D004155 ORTHO05D004837 3.9e-90 335.5 240 73.8
CAN.G1058.24 Capsicum annuum HOM05D004155 ORTHO05D004837 8.8e-90 334.3 250 72.4
Actinidia22301 Actinidia chinensis HOM05D004155 ORTHO05D004837 5.7e-89 331.6 251 72.5
Nitab4.5_0005960g0040 Nicotiana tabacum HOM05D004155 ORTHO05D004837 5.7e-89 331.6 249 72.3
CSS0005110 Camellia sinensis var. sinensis HOM05D004155 ORTHO05D004837 9.7e-89 330.9 255 73.3
CSS0021878 Camellia sinensis var. sinensis HOM05D004155 ORTHO05D004837 9.7e-89 330.9 255 73.3
Oeu040215.1 Olea europaea HOM05D004155 ORTHO05D004837 1.3e-88 330.5 248 73.4
DCAR_006831 Daucus carota HOM05D004155 ORTHO05D004837 1.7e-88 330.1 250 70.0
Duzib068G1244 Durio zibethinus HOM05D004155 ORTHO05D004837 1.7e-88 330.1 252 71.0
Thecc.03G251400 Theobroma cacao HOM05D004155 ORTHO05D004837 2.8e-88 329.3 252 72.2
PGSC0003DMG400004812 Solanum tuberosum HOM05D004155 ORTHO05D004837 3.7e-88 328.9 249 71.1
MELO3C013940.2 Cucumis melo HOM05D004155 ORTHO05D004837 8.2e-88 327.8 249 71.1
Hma1.2p1_0316F.1_g123160 Hydrangea macrophylla HOM05D004155 ORTHO05D004837 1.1e-87 327.4 253 71.9
CAN.G62.43 Capsicum annuum HOM05D004155 ORTHO05D004837 1.4e-87 327.0 249 70.3
CsaV3_3G002720 Cucumis sativus L. HOM05D004155 ORTHO05D004837 1.4e-87 327.0 246 71.5
Haze_07913 Corylus avellana HOM05D004155 ORTHO05D004837 4.1e-87 325.5 255 70.6
Gohir.A08G170500 Gossypium hirsutum HOM05D004155 ORTHO05D004837 4.1e-87 325.5 252 71.4
Gorai.004G198700 Gossypium raimondii HOM05D004155 ORTHO05D004837 4.1e-87 325.5 252 71.0
Duzib136G0003 Durio zibethinus HOM05D004155 ORTHO05D004837 5.3e-87 325.1 253 70.4
QL12p012142 Quercus lobata HOM05D004155 ORTHO05D004837 7.0e-87 324.7 250 71.2
ClCG10G002690 Citrullus lanatus HOM05D004155 ORTHO05D004837 9.1e-87 324.3 248 70.2
Gohir.D08G188700 Gossypium hirsutum HOM05D004155 ORTHO05D004837 9.1e-87 324.3 252 71.0
GSVIVG01001328001 Vitis vinifera HOM05D004155 ORTHO05D004837 2.0e-86 323.2 250 70.8
Cfa012719 Carpinus fangiana HOM05D004155 ORTHO05D004837 5.9e-86 321.6 255 69.8
Ca_21966_v3 Cicer arietinum L. HOM05D004155 ORTHO05D004837 5.9e-86 321.6 256 69.5
Atru.chr9.1312 Acer truncatum HOM05D004155 ORTHO05D004837 1.0e-85 320.9 252 68.7
Manes.01G080600 Manihot esculenta HOM05D004155 ORTHO05D004837 1.0e-85 320.9 256 69.1
COL.COLO4_37174 Corchorus olitorius HOM05D004155 ORTHO05D004837 1.3e-85 320.5 266 66.9
MD06G1058700 Malus domestica HOM05D004155 ORTHO05D004837 1.3e-85 320.5 254 68.9
Potri.003G077000 Populus trichocarpa HOM05D004155 ORTHO05D004837 1.7e-85 320.1 258 67.8
CiPaw.12G052800 Carya illinoinensis HOM05D004155 ORTHO05D004837 2.2e-85 319.7 254 68.9
Glyma.17G141800 Glycine max HOM05D004155 ORTHO05D004837 6.5e-85 318.2 250 68.0
Gohir.D12G219500 Gossypium hirsutum HOM05D004155 ORTHO05D004837 1.1e-84 317.4 252 68.7
Sed0004864 Sechium edule HOM05D004155 ORTHO05D004837 1.5e-84 317.0 250 70.0
Gorai.008G235200 Gossypium raimondii HOM05D004155 ORTHO05D004837 1.9e-84 316.6 252 68.7
Gohir.A12G217000 Gossypium hirsutum HOM05D004155 ORTHO05D004837 3.2e-84 315.8 252 68.3
Manes.02G039600 Manihot esculenta HOM05D004155 ORTHO05D004837 4.2e-84 315.5 255 67.1
Phvul.003G220600 Phaseolus vulgaris HOM05D004155 ORTHO05D004837 4.2e-84 315.5 250 68.4
DCAR_008491 Daucus carota HOM05D004155 ORTHO05D004837 5.5e-84 315.1 251 66.9
VMungo0251G3701 Vigna mungo HOM05D004155 ORTHO05D004837 9.4e-84 314.3 250 68.0
Nn6g33959 Nelumbo nucifera HOM05D004155 ORTHO05D004837 1.2e-83 313.9 250 69.6
Migut.A00944 Erythranthe guttata HOM05D004155 ORTHO05D004837 1.6e-83 313.5 241 71.4
Prupe.5G069700 Prunus persica HOM05D004155 ORTHO05D004837 2.7e-83 312.8 251 68.5
Medtr4g100930 Medicago truncatula HOM05D004155 ORTHO05D004837 3.6e-83 312.4 258 68.2
CANSAT21G0249 Cannabis sativa HOM05D004155 ORTHO05D004837 2.3e-82 309.7 253 68.8
Lj4g0023659 Lotus japonicus HOM05D004155 ORTHO05D004837 2.3e-82 309.7 249 66.7
Sc01g0008440 Simmondsia chinensis HOM05D004155 ORTHO05D004837 4.0e-82 308.9 250 67.6
Ciclev10021960m.g Citrus clementina HOM05D004155 ORTHO05D004837 5.2e-82 308.5 251 66.9
Potri.001G157900 Populus trichocarpa HOM05D004155 ORTHO05D004837 5.2e-82 308.5 261 64.0
EL10Ac9g21736 Beta vulgaris HOM05D004155 ORTHO05D004837 8.8e-82 307.8 250 64.8
Glyma.05G059400 Glycine max HOM05D004155 ORTHO05D004837 8.8e-82 307.8 250 67.2
PGR142G3296 Punica granatum HOM05D004155 ORTHO05D004837 1.2e-81 307.4 245 68.2
TAR374G0401 Trochodendron aralioides HOM05D004155 ORTHO05D004837 3.3e-81 305.8 252 67.5
Duzib084G0799 Durio zibethinus HOM05D004155 ORTHO05D004837 7.5e-81 304.7 252 67.5
TPR.G11991 Trifolium pratense HOM05D004155 ORTHO05D004837 9.7e-81 304.3 258 66.7
TAR374G0168 Trochodendron aralioides HOM05D004155 ORTHO05D004837 9.7e-81 304.3 252 67.1
Aqoxy5G03883 Aquilegia oxysepala HOM05D004155 ORTHO05D004837 1.3e-80 303.9 258 66.3
TWI81G0233 Tripterygium wilfordii HOM05D004155 ORTHO05D004837 1.3e-80 303.9 251 66.5
TWI60G0516 Tripterygium wilfordii HOM05D004155 ORTHO05D004837 1.7e-80 303.5 251 66.5
Lalb_Chr16g0386681 Lupinus albus HOM05D004155 ORTHO05D004837 2.2e-80 303.1 258 65.9
Thhalv10014511m.g Eutrema salsugineum HOM05D004155 ORTHO05D004837 7.0e-79 298.1 248 63.3
Dinv21638 Davidia involucrata HOM05D004155 ORTHO05D004837 9.1e-79 297.7 223 71.7
Lalb_Chr09g0330111 Lupinus albus HOM05D004155 ORTHO05D004837 2.0e-78 296.6 255 65.5
Nitab4.5_0000312g0050 Nicotiana tabacum HOM05D004155 ORTHO05D004837 3.5e-78 295.8 213 73.2
PSO063G2044 Papaver somniferum HOM05D004155 ORTHO05D004837 3.5e-78 295.8 262 64.9
PSO782G0374 Papaver somniferum HOM05D004155 ORTHO05D004837 3.5e-78 295.8 262 65.3
CARHR195630 Cardamine hirsuta HOM05D004155 ORTHO05D004837 4.5e-78 295.4 244 62.7
Eucgr.I02746 Eucalyptus grandis HOM05D004155 ORTHO05D004837 5.9e-78 295.0 248 65.3
Sp3g02480 Schrenkiella parvula HOM05D004155 ORTHO05D004837 1.0e-77 294.3 250 62.0
FAN18G2873 Fragaria x ananassa HOM05D004155 ORTHO05D004837 2.9e-77 292.7 253 64.4
FAN18G3217 Fragaria x ananassa HOM05D004155 ORTHO05D004837 2.9e-77 292.7 253 64.4
FAN18G4261 Fragaria x ananassa HOM05D004155 ORTHO05D004837 2.9e-77 292.7 253 64.4
CARHR077510 Cardamine hirsuta HOM05D004155 ORTHO05D004837 3.8e-77 292.4 255 60.8
HanXRQChr03g0088551 Helianthus annuus HOM05D004155 ORTHO05D004837 3.8e-77 292.4 240 66.2
FAN08G3385 Fragaria x ananassa HOM05D004155 ORTHO05D004837 6.5e-77 291.6 253 64.0
THA.LOC104802903 Tarenaya hassleriana HOM05D004155 ORTHO05D004837 6.5e-77 291.6 243 63.4
RcHm_v2.0_Chr7g0203271 Rosa chinensis HOM05D004155 ORTHO05D004837 8.5e-77 291.2 252 63.9
BcaB08g36763 Brassica carinata HOM05D004155 ORTHO05D004837 1.1e-76 290.8 252 62.3
FvH4_5g18890 Fragaria vesca HOM05D004155 ORTHO05D004837 1.1e-76 290.8 253 64.0
C09p59610 Brassica napus HOM05D004155 ORTHO05D004837 1.5e-76 290.4 251 62.5
Nitab4.5_0001076g0090 Nicotiana tabacum HOM05D004155 ORTHO05D004837 1.5e-76 290.4 208 72.6
HanXRQChr06g0164361 Helianthus annuus HOM05D004155 ORTHO05D004837 1.9e-76 290.0 246 64.2
AL3G13170 Arabidopsis lyrata HOM05D004155 ORTHO05D004837 3.2e-76 289.3 249 61.4
FAN04G2128 Fragaria x ananassa HOM05D004155 ORTHO05D004837 3.2e-76 289.3 253 63.6
FAN13G1725 Fragaria x ananassa HOM05D004155 ORTHO05D004837 3.2e-76 289.3 252 63.1
Sabra03G0047400 Salix brachista HOM05D004155 ORTHO05D004837 3.2e-76 289.3 315 54.0
THA.LOC104820827 Tarenaya hassleriana HOM05D004155 ORTHO05D004837 3.2e-76 289.3 245 62.9
BcaC04g18780 Brassica carinata HOM05D004155 ORTHO05D004837 4.2e-76 288.9 251 62.2
Peaxi162Scf00174g00143 Petunia axillaris HOM05D004155 ORTHO05D004837 4.2e-76 288.9 232 69.0
Sp6g26670 Schrenkiella parvula HOM05D004155 ORTHO05D004837 5.5e-76 288.5 250 62.4
BolC9t58800H Brassica oleracea HOM05D004155 ORTHO05D004837 7.2e-76 288.1 256 60.9
ECA240G3289 Erigeron canadensis HOM05D004155 ORTHO05D004837 7.2e-76 288.1 255 65.1
Lsat_1_v5_gn_6_91040 Lactuca sativa HOM05D004155 ORTHO05D004837 7.2e-76 288.1 249 65.9
A10p21850 Brassica napus HOM05D004155 ORTHO05D004837 9.4e-76 287.7 249 61.4
Carub.0006s1579 Capsella rubella HOM05D004155 ORTHO05D004837 9.4e-76 287.7 247 61.5
Aa31LG5G14010 Aethionema arabicum HOM05D004155 ORTHO05D004837 1.6e-75 287.0 246 62.6
unitig_37.g12342 Utricularia gibba HOM05D004155 ORTHO05D004837 1.6e-75 287.0 254 61.4
Aa31LG11G12130 Aethionema arabicum HOM05D004155 ORTHO05D004837 2.7e-75 286.2 246 62.2
BraA10t44245Z Brassica rapa HOM05D004155 ORTHO05D004837 2.7e-75 286.2 251 61.8
Psat4g072240 Pisum sativum HOM05D004155 ORTHO05D004837 2.7e-75 286.2 255 63.9
AL6G28640 Arabidopsis lyrata HOM05D004155 ORTHO05D004837 4.7e-75 285.4 248 60.9
AT5G17550 Arabidopsis thaliana HOM05D004155 ORTHO05D004837 4.7e-75 285.4 247 60.3
BraA03t12501Z Brassica rapa HOM05D004155 ORTHO05D004837 8.0e-75 284.6 249 61.4
AT3G03490 Arabidopsis thaliana HOM05D004155 ORTHO05D004837 1.0e-74 284.3 251 59.8
Carub.0003s0263 Capsella rubella HOM05D004155 ORTHO05D004837 1.0e-74 284.3 248 61.3
Ah.11g040960 Amaranthus hybridus HOM05D004155 ORTHO05D004837 6.8e-74 281.6 241 64.3
BcaB04g19367 Brassica carinata HOM05D004155 ORTHO05D004837 6.8e-74 281.6 258 59.7
Nitab4.5_0000618g0060 Nicotiana tabacum HOM05D004155 ORTHO05D004837 6.8e-74 281.6 219 68.9
BcaC01g04400 Brassica carinata HOM05D004155 ORTHO05D004837 2.6e-73 279.6 248 60.5
C03p40540 Brassica napus HOM05D004155 ORTHO05D004837 2.6e-73 279.6 248 60.5
BolC3t16319H Brassica oleracea HOM05D004155 ORTHO05D004837 2.6e-73 279.6 248 60.5
TAR375G0135 Trochodendron aralioides HOM05D004155 ORTHO05D004837 3.4e-73 279.3 236 66.5
Ah.11g040940 Amaranthus hybridus HOM05D004155 ORTHO05D004837 7.5e-73 278.1 241 63.9
Sabra01G0133600 Salix brachista HOM05D004155 ORTHO05D004837 7.5e-73 278.1 324 50.9
A03p33290 Brassica napus HOM05D004155 ORTHO05D004837 9.8e-73 277.7 248 60.5
MBI04_g09499_MAGBIO Magnolia biondii HOM05D004155 ORTHO05D004837 1.4e-71 273.9 270 61.1
arahy.Tifrunner.gnm1.ann1.FN76PE Arachis hypogaea HOM05D004155 ORTHO05D004837 3.5e-70 269.2 257 63.0
AUR62016725 Chenopodium quinoa HOM05D004155 ORTHO05D004837 4.2e-68 262.3 252 59.1
arahy.Tifrunner.gnm1.ann1.9Q5ZL0 Arachis hypogaea HOM05D004155 ORTHO05D004837 7.2e-68 261.5 241 63.9
Rhsim02G0215900 Rhododendron simsii HOM05D004155 ORTHO05D004837 8.9e-66 254.6 391 45.3
HPP92_007424 Vanilla planifolia HOM05D004155 ORTHO05D004837 8.9e-66 254.6 259 56.0
Ah.11g040910 Amaranthus hybridus HOM05D004155 ORTHO05D004837 1.2e-65 254.2 239 59.4
CDE11G1226 Ceratophyllum demersum HOM05D004155 ORTHO05D004837 1.0e-61 241.1 253 54.5
ATR0317G023 Amborella trichopoda HOM05D004155 ORTHO05D004837 2.3e-61 240.0 243 58.8
CDE09G1113 Ceratophyllum demersum HOM05D004155 ORTHO05D004837 9.5e-60 234.6 253 54.2
Zm00001eb249680 Zea mays HOM05D004155 ORTHO05D004837 4.7e-59 232.3 247 53.4
Os02g0661000 Oryza sativa ssp. japonica HOM05D004155 ORTHO05D004837 5.7e-57 225.3 252 52.4
Ah.11g040970 Amaranthus hybridus HOM05D004155 ORTHO05D004837 2.9e-56 223.0 237 54.0
Actinidia13193 Actinidia chinensis HOM05D004155 ORTHO05D004837 2.4e-55 219.9 144 78.5
vmacro11263 Vaccinium macrocarpon HOM05D004155 ORTHO05D004837 1.2e-54 217.6 139 78.4
Phvul.003G220550 Phaseolus vulgaris HOM05D004155 ORTHO05D004837 6.6e-53 211.8 153 69.9
Zm00001eb186660 Zea mays HOM05D004155 ORTHO05D004837 1.1e-52 211.1 247 51.4
Nn1g00995 Nelumbo nucifera HOM05D004155 ORTHO05D004837 5.6e-52 208.8 242 52.5
Pp3c2_16800 Physcomitrium patens HOM05D004155 ORTHO05D004837 1.2e-46 191.0 270 47.0
Gorai.003G171500 Gossypium raimondii HOM05D004155 ORTHO05D004837 1.3e-45 187.6 236 50.8
Gohir.D03G162900 Gossypium hirsutum HOM05D004155 ORTHO05D004837 6.6e-45 185.3 165 62.4
Gohir.A03G008100 Gossypium hirsutum HOM05D004155 ORTHO05D004837 2.8e-43 179.9 165 60.0
Cpa.g.sc43.156 Carica papaya HOM05D004155 ORTHO05D004837 6.2e-43 178.7 121 72.7
Mapoly0045s0092 Marchantia polymorpha HOM05D004155 ORTHO05D004837 3.4e-41 172.9 288 42.4
Ah.11g040930 Amaranthus hybridus HOM05D004155 ORTHO05D004837 1.4e-39 167.5 195 51.8
TPR.G37592 Trifolium pratense HOM05D004155 ORTHO05D004837 1.6e-38 164.1 117 70.9
AagrBONN_evm.TU.Sc2ySwM_228.1233 Anthoceros agrestis HOM05D004155 ORTHO05D004837 1.8e-34 150.6 272 39.7
CBR_g22421 Chara braunii HOM05D004155 ORTHO05D004837 1.7e-32 144.1 276 38.8
Actinidia14427 Actinidia chinensis HOM05D004155 ORTHO05D004837 6.4e-32 142.1 126 65.1
Cpa.g.sc43.157 Carica papaya HOM05D004155 ORTHO05D004837 6.6e-29 132.1 134 57.5
SMO146G0254 Selaginella moellendorffii HOM05D004155 ORTHO05D004837 1.8e-26 124.0 95 64.2
SMO340G0179 Selaginella moellendorffii HOM05D004155 ORTHO05D004837 3.1e-26 123.2 91 63.7
CAN.G1058.18 Capsicum annuum HOM05D002401 ORTHO05D007109 3.4e-25 119.8 69 81.2
TPR.G37609 Trifolium pratense HOM05D004155 ORTHO05D004837 2.2e-24 117.1 101 66.3
Thhalv10015034m.g Eutrema salsugineum HOM05D004155 ORTHO05D004837 9.0e-18 95.1 92 56.5
PRCOL_00005614 Prasinoderma coloniale HOM05D004155 ORTHO05D004837 2.2e-16 90.5 110 36.4
Cre02.g119000 Chlamydomonas reinhardtii HOM05D004155 ORTHO05D004837 5.4e-15 85.9 128 38.3
PSO384G2334 Papaver somniferum HOM05D004155 ORTHO05D004837 5.4e-15 85.9 116 49.1
arahy.Tifrunner.gnm1.ann1.Z2VGSW Arachis hypogaea HOM05D004155 ORTHO05D004837 2.1e-14 84.0 114 46.5
arahy.Tifrunner.gnm1.ann1.BEL5CJ Arachis hypogaea HOM05D004155 ORTHO05D004837 5.1e-13 79.3 76 59.2
PGSC0003DMG400045666 Solanum tuberosum HOM05D004155 ORTHO05D004837 2.5e-12 77.0 95 52.6
SEGI_17945 Sequoiadendron giganteum HOM05D004155 ORTHO05D004837 1.1e-10 71.6 131 41.2
ECA247G1153 Erigeron canadensis HOM05D004155 ORTHO05D004837 6.9e-10 68.9 94 50.0
Pp3c1_22650 Physcomitrium patens HOM05D004155 ORTHO05D004837 1.5e-09 67.8 103 41.7
Cfa022446 Carpinus fangiana HOM05D004155 ORTHO05D126510 3.2e-07 60.1 95 38.9


User provided reference genes

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