Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold146G36140 Striga asiatica HOM05D005476 ORTHO05D006886 4.9e-210 734.2 362 100.0
SGA_v2.0_scaffold120G32912 Striga asiatica HOM05D005476 ORTHO05D006886 6.1e-168 594.3 340 85.0
SalBow2G2575 Salvia bowleyana HOM05D005476 ORTHO05D006886 1.2e-147 526.9 361 72.9
Migut.N00789 Erythranthe guttata HOM05D005476 ORTHO05D006886 1.7e-138 496.5 357 71.1
SalBow5G1841 Salvia bowleyana HOM05D005476 ORTHO05D006886 1.1e-137 493.8 333 74.5
Dinv14437 Davidia involucrata HOM05D005476 ORTHO05D006886 4.5e-131 471.9 349 66.8
unitig_8.g3687 Utricularia gibba HOM05D005476 ORTHO05D006886 3.8e-130 468.8 351 67.5
SalBow8G4850 Salvia bowleyana HOM05D005476 ORTHO05D006886 6.4e-125 451.4 350 66.9
Dinv28640 Davidia involucrata HOM05D005476 ORTHO05D006886 1.1e-124 450.7 349 64.8
Cc01_g14180 Coffea canephora HOM05D005476 ORTHO05D006886 5.4e-124 448.4 323 66.6
unitig_22.g5210 Utricularia gibba HOM05D005476 ORTHO05D006886 4.6e-123 445.3 364 64.3
CSS0011477 Camellia sinensis var. sinensis HOM05D005476 ORTHO05D006886 5.9e-123 444.9 330 67.0
CSS0028478 Camellia sinensis var. sinensis HOM05D005476 ORTHO05D006886 5.0e-122 441.8 330 66.1
Solyc06g076950.3 Solanum lycopersicum HOM05D005476 ORTHO05D006886 3.1e-119 432.6 346 62.4
TAR633G0563 Trochodendron aralioides HOM05D005476 ORTHO05D006886 4.0e-119 432.2 349 61.9
RcHm_v2.0_Chr5g0069451 Rosa chinensis HOM05D005476 ORTHO05D006886 5.2e-119 431.8 344 61.0
PGSC0003DMG400030356 Solanum tuberosum HOM05D005476 ORTHO05D006886 1.2e-118 430.6 347 62.2
Sopen06g033350 Solanum pennellii HOM05D005476 ORTHO05D006886 3.4e-118 429.1 347 62.0
TAR636G1181 Trochodendron aralioides HOM05D005476 ORTHO05D006886 5.8e-118 428.3 344 62.2
Lsat_1_v5_gn_9_20101 Lactuca sativa HOM05D005476 ORTHO05D006886 1.7e-117 426.8 334 64.1
CAN.G394.127 Capsicum annuum HOM05D005476 ORTHO05D006886 1.9e-116 423.3 329 62.9
Nitab4.5_0001806g0030 Nicotiana tabacum HOM05D005476 ORTHO05D006886 3.2e-116 422.5 328 63.1
vmacro02961 Vaccinium macrocarpon HOM05D005476 ORTHO05D006886 3.2e-116 422.5 411 54.7
Peaxi162Scf00540g00426 Petunia axillaris HOM05D005476 ORTHO05D006886 5.4e-116 421.8 332 63.3
Rhsim13G0069500 Rhododendron simsii HOM05D005476 ORTHO05D006886 2.0e-115 419.9 359 59.1
DCAR_007375 Daucus carota HOM05D005476 ORTHO05D006886 2.7e-115 419.5 345 60.3
Nn2g13708 Nelumbo nucifera HOM05D005476 ORTHO05D006886 2.7e-115 419.5 321 64.5
Eucgr.B02253 Eucalyptus grandis HOM05D005476 ORTHO05D006886 7.8e-115 417.9 350 60.3
CiPaw.13G077600 Carya illinoinensis HOM05D005476 ORTHO05D006886 1.7e-114 416.8 340 61.2
QL01p038276 Quercus lobata HOM05D005476 ORTHO05D006886 2.3e-114 416.4 339 60.2
Atru.chr3.4220 Acer truncatum HOM05D005476 ORTHO05D006886 5.0e-114 415.2 359 57.9
MD11G1074700 Malus domestica HOM05D005476 ORTHO05D006886 6.6e-114 414.8 349 60.2
Aqoxy2G00901 Aquilegia oxysepala HOM05D005476 ORTHO05D006886 1.1e-113 414.1 329 64.4
FAN21G0574 Fragaria x ananassa HOM05D005476 ORTHO05D006886 1.5e-113 413.7 344 58.7
Cfa011695 Carpinus fangiana HOM05D005476 ORTHO05D006886 1.9e-113 413.3 342 61.7
FvH4_3g38550 Fragaria vesca HOM05D005476 ORTHO05D006886 2.5e-113 412.9 344 58.7
FAN11G1091 Fragaria x ananassa HOM05D005476 ORTHO05D006886 2.5e-113 412.9 344 58.7
Nitab4.5_0000010g0290 Nicotiana tabacum HOM05D005476 ORTHO05D006886 2.5e-113 412.9 328 61.6
Prupe.6G057500 Prunus persica HOM05D005476 ORTHO05D006886 3.3e-113 412.5 339 60.8
CANSAT25G3760 Cannabis sativa HOM05D005476 ORTHO05D006886 4.3e-113 412.1 330 62.7
Haze_24322 Corylus avellana HOM05D005476 ORTHO05D006886 4.3e-113 412.1 339 60.8
COL.COLO4_19157 Corchorus olitorius HOM05D005476 ORTHO05D006886 7.3e-113 411.4 354 60.2
FAN16G3667 Fragaria x ananassa HOM05D005476 ORTHO05D006886 6.2e-112 408.3 344 58.4
MD03G1070700 Malus domestica HOM05D005476 ORTHO05D006886 1.1e-111 407.5 339 60.5
Duzib168G1303 Durio zibethinus HOM05D005476 ORTHO05D006886 1.4e-111 407.1 340 60.6
Thecc.09G301800 Theobroma cacao HOM05D005476 ORTHO05D006886 1.4e-111 407.1 357 58.5
Manes.02G119400 Manihot esculenta HOM05D005476 ORTHO05D006886 3.1e-111 406.0 328 61.6
Duzib170G1024 Durio zibethinus HOM05D005476 ORTHO05D006886 5.2e-111 405.2 352 59.4
TWI31G0160 Tripterygium wilfordii HOM05D005476 ORTHO05D006886 1.5e-110 403.7 346 59.8
CiPaw.14G059600 Carya illinoinensis HOM05D005476 ORTHO05D006886 2.0e-110 403.3 340 60.0
Potri.009G046200 Populus trichocarpa HOM05D005476 ORTHO05D006886 2.6e-110 402.9 341 58.7
Cpa.g.sc415.4 Carica papaya HOM05D005476 ORTHO05D006886 4.4e-110 402.1 350 58.3
Gorai.006G106700 Gossypium raimondii HOM05D005476 ORTHO05D006886 5.8e-110 401.7 355 58.6
TWI79G0899 Tripterygium wilfordii HOM05D005476 ORTHO05D006886 2.9e-109 399.4 351 58.7
HanXRQChr04g0109161 Helianthus annuus HOM05D005476 ORTHO05D006886 3.7e-109 399.1 333 60.4
Nn2g11493 Nelumbo nucifera HOM05D005476 ORTHO05D006886 4.9e-109 398.7 268 70.9
Ciclev10028681m.g Citrus clementina HOM05D005476 ORTHO05D006886 6.4e-109 398.3 341 56.9
GSVIVG01024740001 Vitis vinifera HOM05D005476 ORTHO05D006886 1.1e-108 397.5 339 59.3
Sabra09G0033300 Salix brachista HOM05D005476 ORTHO05D006886 3.2e-108 396.0 341 58.9
Manes.01G161600 Manihot esculenta HOM05D005476 ORTHO05D006886 4.1e-108 395.6 319 61.8
FAN25G3001 Fragaria x ananassa HOM05D005476 ORTHO05D006886 5.4e-108 395.2 370 54.3
Hund18848 Selenicereus undatus HOM05D005476 ORTHO05D006886 1.6e-107 393.7 352 56.8
PSO339G1712 Papaver somniferum HOM05D005476 ORTHO05D006886 3.5e-107 392.5 292 65.4
PSO801G0319 Papaver somniferum HOM05D005476 ORTHO05D006886 6.0e-107 391.7 292 65.4
Ah.08g221180 Amaranthus hybridus HOM05D005476 ORTHO05D006886 3.0e-106 389.4 336 58.6
Potri.001G251500 Populus trichocarpa HOM05D005476 ORTHO05D006886 3.0e-106 389.4 319 59.6
Carub.0008s1935 Capsella rubella HOM05D005476 ORTHO05D006886 3.3e-105 386.0 313 60.7
Thhalv10014005m.g Eutrema salsugineum HOM05D005476 ORTHO05D006886 5.6e-105 385.2 313 61.7
AUR62020130 Chenopodium quinoa HOM05D005476 ORTHO05D006886 7.3e-105 384.8 364 55.5
MBI14_g42907_MAGBIO Magnolia biondii HOM05D005476 ORTHO05D006886 1.2e-104 384.0 340 57.4
Lalb_Chr17g0345081 Lupinus albus HOM05D005476 ORTHO05D006886 8.1e-104 381.3 330 57.0
Sc06g0008450 Simmondsia chinensis HOM05D005476 ORTHO05D006886 8.1e-104 381.3 358 57.5
AT5G58730 Arabidopsis thaliana HOM05D005476 ORTHO05D006886 1.1e-103 380.9 316 60.4
AUR62001646 Chenopodium quinoa HOM05D005476 ORTHO05D006886 1.1e-103 380.9 359 56.0
EL10Ac7g16167 Beta vulgaris HOM05D005476 ORTHO05D006886 1.8e-103 380.2 361 55.4
BraA10t43679Z Brassica rapa HOM05D005476 ORTHO05D006886 1.8e-103 380.2 322 59.6
ECA247G2000 Erigeron canadensis HOM05D005476 ORTHO05D006886 1.8e-103 380.2 353 55.2
A10p15540 Brassica napus HOM05D005476 ORTHO05D006886 5.2e-103 378.6 313 60.1
LjContig00155g0002690 Lotus japonicus HOM05D005476 ORTHO05D006886 6.8e-103 378.3 319 57.4
Sp6g20420 Schrenkiella parvula HOM05D005476 ORTHO05D006886 8.9e-103 377.9 323 59.8
AL8G35010 Arabidopsis lyrata HOM05D005476 ORTHO05D006886 1.2e-102 377.5 316 60.1
THA.LOC104810712 Tarenaya hassleriana HOM05D005476 ORTHO05D006886 2.6e-102 376.3 289 62.3
Aa31LG11G490 Aethionema arabicum HOM05D005476 ORTHO05D006886 7.6e-102 374.8 328 57.9
ClCG03G000760 Citrullus lanatus HOM05D005476 ORTHO05D006886 9.9e-102 374.4 335 57.0
MELO3C020550.2 Cucumis melo HOM05D005476 ORTHO05D006886 9.9e-102 374.4 334 56.3
Glyma.02G226600 Glycine max HOM05D005476 ORTHO05D006886 9.9e-102 374.4 326 58.0
Sed0016907 Sechium edule HOM05D005476 ORTHO05D006886 9.9e-102 374.4 342 56.1
C09p50810 Brassica napus HOM05D005476 ORTHO05D006886 2.2e-101 373.2 318 59.4
Ca_05598_v3 Cicer arietinum L. HOM05D005476 ORTHO05D006886 3.8e-101 372.5 339 56.9
CARHR272640 Cardamine hirsuta HOM05D005476 ORTHO05D006886 8.4e-101 371.3 321 59.2
TPR.G5779 Trifolium pratense HOM05D005476 ORTHO05D006886 1.1e-100 370.9 320 56.6
BolC9t57941H Brassica oleracea HOM05D005476 ORTHO05D006886 1.9e-100 370.2 318 59.1
Medtr5g070350 Medicago truncatula HOM05D005476 ORTHO05D006886 3.2e-100 369.4 315 56.8
Glyma.14G193500 Glycine max HOM05D005476 ORTHO05D006886 4.1e-100 369.0 327 56.9
Oeu013433.3 Olea europaea HOM05D005476 ORTHO05D006886 4.1e-100 369.0 272 66.2
Psat2g058600 Pisum sativum HOM05D005476 ORTHO05D006886 5.4e-100 368.6 322 56.2
Gohir.D09G090400 Gossypium hirsutum HOM05D005476 ORTHO05D006886 1.2e-99 367.5 282 64.5
Gohir.A09G090300 Gossypium hirsutum HOM05D005476 ORTHO05D006886 1.6e-99 367.1 282 64.5
Sed0014418 Sechium edule HOM05D005476 ORTHO05D006886 1.3e-98 364.0 340 54.7
Phvul.008G261400 Phaseolus vulgaris HOM05D005476 ORTHO05D006886 3.0e-98 362.8 342 55.0
arahy.Tifrunner.gnm1.ann1.Q06W8H Arachis hypogaea HOM05D005476 ORTHO05D006886 6.6e-98 361.7 334 54.5
HPP92_002247 Vanilla planifolia HOM05D005476 ORTHO05D006886 6.6e-98 361.7 321 57.3
PGR102G2402 Punica granatum HOM05D005476 ORTHO05D006886 5.2e-95 352.1 274 64.6
BcaC04g19834 Brassica carinata HOM05D005476 ORTHO05D006886 4.4e-94 349.0 318 57.2
CDE04G1962 Ceratophyllum demersum HOM05D005476 ORTHO05D006886 4.4e-94 349.0 287 58.9
VMungo0647G0678 Vigna mungo HOM05D005476 ORTHO05D006886 7.1e-92 341.7 291 60.5
CsaV3_1G036180 Cucumis sativus L. HOM05D005476 ORTHO05D006886 1.3e-90 337.4 277 59.6
SHI19142 Sapria himalayana HOM05D005476 ORTHO05D006886 1.9e-89 333.6 324 54.9
ATR0618G050 Amborella trichopoda HOM05D005476 ORTHO05D006886 1.3e-88 330.9 319 52.7
Lj1A137G45 Lonicera japonica HOM05D005476 ORTHO05D006886 6.9e-87 325.1 324 53.1
Oeu000377.2 Olea europaea HOM05D005476 ORTHO05D006886 3.4e-86 322.8 280 59.6
Os03g0737701 Oryza sativa ssp. japonica HOM05D005476 ORTHO05D006886 7.1e-84 315.1 335 50.7
Zm00001eb056490 Zea mays HOM05D005476 ORTHO05D006886 8.7e-82 308.1 289 56.1
CDE02G0680 Ceratophyllum demersum HOM05D005476 ORTHO05D006886 6.2e-80 302.0 285 54.0
Pp3c1_3930 Physcomitrium patens HOM05D005476 ORTHO05D006886 1.0e-66 258.1 304 43.4
AagrBONN_evm.TU.Sc2ySwM_362.363 Anthoceros agrestis HOM05D005476 ORTHO05D006886 1.8e-66 257.3 281 49.8
SEGI_26423 Sequoiadendron giganteum HOM05D005476 ORTHO05D006886 6.7e-66 255.4 288 46.2
SMO329G0019 Selaginella moellendorffii HOM05D005476 ORTHO05D006886 1.8e-63 247.3 266 46.6
Mapoly0060s0007 Marchantia polymorpha HOM05D005476 ORTHO05D006886 2.6e-62 243.4 275 44.4
Pp3c7_18020 Physcomitrium patens HOM05D005476 ORTHO05D006886 7.6e-62 241.9 292 43.2
AL1010U10010 Arabidopsis lyrata HOM05D005476 ORTHO05D006886 4.2e-60 236.1 190 62.1
arahy.Tifrunner.gnm1.ann1.70CJD0 Arachis hypogaea HOM05D005476 ORTHO05D006886 4.8e-56 222.6 196 54.6
CBR_g23861 Chara braunii HOM05D005476 ORTHO05D006886 6.9e-55 218.8 269 42.8
Gohir.D05G089750 Gossypium hirsutum HOM05D005476 ORTHO05D006886 3.7e-48 196.4 163 59.5
A03p12050 Brassica napus HOM05D005476 ORTHO05D006886 2.2e-45 187.2 174 57.5
RcHm_v2.0_Chr6g0276161 Rosa chinensis HOM05D005476 ORTHO05D006886 1.7e-32 144.4 130 58.5
SalBow8G2493 Salvia bowleyana HOM05D005476 ORTHO05D006886 2.4e-31 140.6 179 50.3
RcHm_v2.0_Chr7g0201761 Rosa chinensis HOM05D005476 ORTHO05D006886 4.5e-30 136.3 130 55.4
HanXRQChr16g0507541 Helianthus annuus HOM05D005476 ORTHO05D006886 1.2e-27 128.3 92 63.0
BraA03t10517Z Brassica rapa HOM05D005476 ORTHO05D006886 7.0e-23 112.5 104 57.7
C03p15890 Brassica napus HOM05D000062 ORTHO05D021669 3.6e-19 100.1 120 50.0
BolC3t14020H Brassica oleracea HOM05D000062 ORTHO05D006886 3.6e-19 100.1 120 50.0
RcHm_v2.0_Chr7g0242751 Rosa chinensis HOM05D005476 ORTHO05D006886 1.5e-17 94.7 87 56.3
Actinidia23243 Actinidia chinensis HOM05D005476 ORTHO05D006886 3.4e-17 93.6 63 74.6
arahy.Tifrunner.gnm1.ann1.Y3WSKM Arachis hypogaea HOM05D005476 ORTHO05D006886 8.3e-16 89.0 81 55.6
Pp3c11_9540 Physcomitrium patens HOM05D005476 ORTHO05D006886 1.5e-12 78.2 95 45.3
SalBow5G5594 Salvia bowleyana HOM05D005476 ORTHO05D006886 1.6e-11 74.7 71 52.1
RcHm_v2.0_Chr6g0303391 Rosa chinensis HOM05D005476 ORTHO05D006886 7.0e-07 59.3 48 58.3
ATR0691G298 Amborella trichopoda HOM05D000559 ORTHO05D000596 1.2e-06 58.5 280 23.2
SEGI_35827 Sequoiadendron giganteum HOM05D000559 ORTHO05D000596 1.6e-06 58.2 296 22.0
AUR62004081 Chenopodium quinoa HOM05D004293 ORTHO05D005044 2.0e-06 57.8 134 29.1
MBI11_g11984_MAGBIO Magnolia biondii HOM05D000559 ORTHO05D000596 2.0e-06 57.8 298 24.2
Ah.13g067800 Amaranthus hybridus HOM05D000559 ORTHO05D000596 3.5e-06 57.0 286 21.7
MD00G1004100 Malus domestica HOM05D000559 ORTHO05D000596 3.5e-06 57.0 313 22.4
Manes.06G141400 Manihot esculenta HOM05D000559 ORTHO05D000596 3.5e-06 57.0 296 22.0
arahy.Tifrunner.gnm1.ann1.P1Z684 Arachis hypogaea HOM05D000559 ORTHO05D000596 4.6e-06 56.6 295 22.4
arahy.Tifrunner.gnm1.ann1.X4R686 Arachis hypogaea HOM05D000559 ORTHO05D000596 4.6e-06 56.6 295 22.7
AUR62007593 Chenopodium quinoa HOM05D000025 ORTHO05D005044 4.6e-06 56.6 134 29.1
ECA232G1213 Erigeron canadensis HOM05D000559 ORTHO05D000596 7.8e-06 55.8 85 32.9


User provided reference genes

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