Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold146G36132 Striga asiatica HOM05D004868 ORTHO05D006030 9.9e-183 643.3 315 100.0
SalBow2G0736 Salvia bowleyana HOM05D004868 ORTHO05D006030 3.9e-147 525.0 322 78.0
HanXRQChr05g0161431 Helianthus annuus HOM05D004868 ORTHO05D006030 6.1e-140 501.1 320 74.7
ECA246G2619 Erigeron canadensis HOM05D004868 ORTHO05D006030 1.1e-138 496.9 321 73.8
CAN.G134.187 Capsicum annuum HOM05D004868 ORTHO05D006030 1.5e-138 496.5 352 70.5
Migut.B00327 Erythranthe guttata HOM05D004868 ORTHO05D006030 2.6e-138 495.7 316 76.3
MSTRG.13789 Avicennia marina HOM05D004868 ORTHO05D006030 8.2e-137 490.7 322 74.5
Potri.005G046300 Populus trichocarpa HOM05D004868 ORTHO05D006030 1.1e-136 490.3 326 73.3
Manes.09G157900 Manihot esculenta HOM05D004868 ORTHO05D006030 1.8e-136 489.6 324 73.5
TWI12G1223 Tripterygium wilfordii HOM05D004868 ORTHO05D006030 3.1e-136 488.8 328 73.2
AUR62005015 Chenopodium quinoa HOM05D004868 ORTHO05D006030 1.2e-135 486.9 321 74.1
Potri.013G034000 Populus trichocarpa HOM05D004868 ORTHO05D006030 1.2e-135 486.9 326 73.6
CiPaw.07G009000 Carya illinoinensis HOM05D004868 ORTHO05D006030 1.6e-135 486.5 327 73.1
Gorai.007G286600 Gossypium raimondii HOM05D004868 ORTHO05D006030 2.0e-135 486.1 336 73.2
Sabra05G0042300 Salix brachista HOM05D004868 ORTHO05D006030 2.0e-135 486.1 326 72.7
MSTRG.12666 Avicennia marina HOM05D004868 ORTHO05D006030 3.5e-135 485.3 322 73.0
Peaxi162Scf00225g00143 Petunia axillaris HOM05D004868 ORTHO05D006030 1.3e-134 483.4 320 74.4
Phvul.010G080900 Phaseolus vulgaris HOM05D004868 ORTHO05D006030 1.7e-134 483.0 338 70.4
Lalb_Chr13g0291821 Lupinus albus HOM05D004868 ORTHO05D006030 1.5e-133 479.9 325 72.0
QL03p000170 Quercus lobata HOM05D004868 ORTHO05D006030 1.5e-133 479.9 339 71.4
Gohir.D11G266800 Gossypium hirsutum HOM05D004868 ORTHO05D006030 1.9e-133 479.6 336 72.6
QL03p000506 Quercus lobata HOM05D004868 ORTHO05D006030 1.9e-133 479.6 342 70.8
Lalb_Chr12g0208121 Lupinus albus HOM05D004868 ORTHO05D006030 7.2e-133 477.6 329 71.4
TWI36G0026 Tripterygium wilfordii HOM05D004868 ORTHO05D006030 7.2e-133 477.6 328 71.6
arahy.Tifrunner.gnm1.ann1.WET4Y7 Arachis hypogaea HOM05D004868 ORTHO05D006030 2.1e-132 476.1 329 72.0
FAN02G0279 Fragaria x ananassa HOM05D004868 ORTHO05D006030 2.1e-132 476.1 340 70.0
arahy.Tifrunner.gnm1.ann1.VSGL27 Arachis hypogaea HOM05D004868 ORTHO05D006030 2.7e-132 475.7 336 70.8
MD04G1217100 Malus domestica HOM05D004868 ORTHO05D006030 2.7e-132 475.7 328 70.7
Oeu012475.1 Olea europaea HOM05D004868 ORTHO05D006030 3.6e-132 475.3 331 72.2
Sed0014615 Sechium edule HOM05D004868 ORTHO05D006030 3.6e-132 475.3 323 72.1
PGR004G1913 Punica granatum HOM05D004868 ORTHO05D006030 4.7e-132 474.9 333 71.8
Lj3g0018370 Lotus japonicus HOM05D004868 ORTHO05D006030 6.1e-132 474.6 329 70.2
TAR636G1948 Trochodendron aralioides HOM05D004868 ORTHO05D006030 6.1e-132 474.6 314 75.2
FAN05G2179 Fragaria x ananassa HOM05D004868 ORTHO05D006030 8.0e-132 474.2 337 70.0
FAN05G5662 Fragaria x ananassa HOM05D004868 ORTHO05D006030 8.0e-132 474.2 337 70.0
FAN09G4706 Fragaria x ananassa HOM05D004868 ORTHO05D006030 1.0e-131 473.8 337 69.7
TPR.G7590 Trifolium pratense HOM05D004868 ORTHO05D006030 1.0e-131 473.8 323 70.6
BcaNung04260 Brassica carinata HOM05D004868 ORTHO05D006030 3.0e-131 472.2 321 71.0
Cc02_g31280 Coffea canephora HOM05D004868 ORTHO05D006030 3.0e-131 472.2 319 71.8
BraA06t26695Z Brassica rapa HOM05D004868 ORTHO05D006030 4.0e-131 471.9 321 71.0
A03p33990 Brassica napus HOM05D004868 ORTHO05D006030 6.7e-131 471.1 319 72.1
Haze_04309 Corylus avellana HOM05D004868 ORTHO05D006030 6.7e-131 471.1 265 81.9
Nitab4.5_0002840g0160 Nicotiana tabacum HOM05D004868 ORTHO05D006030 8.8e-131 470.7 331 72.8
Thhalv10021106m.g Eutrema salsugineum HOM05D004868 ORTHO05D006030 1.2e-130 470.3 324 71.3
Medtr4g025410 Medicago truncatula HOM05D004868 ORTHO05D006030 1.2e-130 470.3 322 70.8
C07p40470 Brassica napus HOM05D004868 ORTHO05D006030 2.0e-130 469.5 321 70.7
BolC7t44582H Brassica oleracea HOM05D004868 ORTHO05D006030 2.0e-130 469.5 321 70.7
Ca_13816_v3 Cicer arietinum L. HOM05D004868 ORTHO05D006030 2.0e-130 469.5 322 70.8
FAN14G3773 Fragaria x ananassa HOM05D004868 ORTHO05D006030 2.0e-130 469.5 340 69.4
Ciclev10001724m.g Citrus clementina HOM05D004868 ORTHO05D006030 2.6e-130 469.2 350 67.4
Nitab4.5_0002361g0200 Nicotiana tabacum HOM05D004868 ORTHO05D006030 2.6e-130 469.2 331 72.5
COL.COLO4_13636 Corchorus olitorius HOM05D004868 ORTHO05D006030 3.3e-130 468.8 327 73.1
Sp3g03920 Schrenkiella parvula HOM05D004868 ORTHO05D006030 4.4e-130 468.4 327 70.3
Solyc01g098040.3 Solanum lycopersicum HOM05D004868 ORTHO05D006030 4.4e-130 468.4 264 83.0
BraA03t12574Z Brassica rapa HOM05D004868 ORTHO05D006030 5.7e-130 468.0 319 71.8
MD12G1234100 Malus domestica HOM05D004868 ORTHO05D006030 5.7e-130 468.0 338 68.6
Gohir.A11G257000 Gossypium hirsutum HOM05D004868 ORTHO05D006030 7.5e-130 467.6 334 71.0
Sopen01g041620 Solanum pennellii HOM05D004868 ORTHO05D006030 7.5e-130 467.6 264 83.0
ClCG03G010920 Citrullus lanatus HOM05D004868 ORTHO05D006030 9.7e-130 467.2 319 70.8
PGSC0003DMG400022466 Solanum tuberosum HOM05D004868 ORTHO05D006030 9.7e-130 467.2 264 82.6
Cfa006482 Carpinus fangiana HOM05D004868 ORTHO05D006030 8.2e-129 464.2 265 81.1
Glyma.01G139000 Glycine max HOM05D004868 ORTHO05D006030 8.2e-129 464.2 340 67.6
C03p41370 Brassica napus HOM05D004868 ORTHO05D006030 1.1e-128 463.8 321 70.1
DCAR_022833 Daucus carota HOM05D004868 ORTHO05D006030 1.4e-128 463.4 270 79.6
BcaNung04261 Brassica carinata HOM05D004868 ORTHO05D006030 1.8e-128 463.0 321 70.1
CSS0010529 Camellia sinensis var. sinensis HOM05D004868 ORTHO05D006030 1.8e-128 463.0 290 75.5
BolC3t16420H Brassica oleracea HOM05D004868 ORTHO05D006030 2.4e-128 462.6 321 69.8
Actinidia33836 Actinidia chinensis HOM05D004868 ORTHO05D006030 3.1e-128 462.2 276 78.3
Aa31LG5G15350 Aethionema arabicum HOM05D004868 ORTHO05D006030 3.1e-128 462.2 331 68.3
CSS0039857 Camellia sinensis var. sinensis HOM05D004868 ORTHO05D006030 3.1e-128 462.2 284 77.8
PSO170G6220 Papaver somniferum HOM05D004868 ORTHO05D006030 3.1e-128 462.2 328 70.7
Ah.06g192760 Amaranthus hybridus HOM05D004868 ORTHO05D006030 5.3e-128 461.5 294 75.2
Carub.0003s0434 Capsella rubella HOM05D004868 ORTHO05D006030 5.3e-128 461.5 325 69.8
MELO3C010076.2 Cucumis melo HOM05D004868 ORTHO05D006030 5.3e-128 461.5 319 69.9
FvH4_6g03940 Fragaria vesca HOM05D004868 ORTHO05D006030 5.3e-128 461.5 340 68.2
BcaC01g04334 Brassica carinata HOM05D004868 ORTHO05D006030 7.0e-128 461.1 321 69.5
CARHR185710 Cardamine hirsuta HOM05D004868 ORTHO05D006030 7.0e-128 461.1 327 69.7
PSO210G5882 Papaver somniferum HOM05D004868 ORTHO05D006030 7.0e-128 461.1 328 70.4
CsaV3_1G044760 Cucumis sativus L. HOM05D004868 ORTHO05D006030 9.1e-128 460.7 319 69.9
Hma1.2p1_0332F.1_g127880 Hydrangea macrophylla HOM05D004868 ORTHO05D006030 9.1e-128 460.7 338 67.5
CSS0028974 Camellia sinensis var. sinensis HOM05D004868 ORTHO05D006030 1.2e-127 460.3 284 77.8
AL3G15480 Arabidopsis lyrata HOM05D004868 ORTHO05D006030 1.6e-127 459.9 329 68.1
Glyma.03G028300 Glycine max HOM05D004868 ORTHO05D006030 1.6e-127 459.9 349 65.9
Rhsim05G0148800 Rhododendron simsii HOM05D004868 ORTHO05D006030 2.0e-127 459.5 264 81.1
Atru.chr2.656 Acer truncatum HOM05D004868 ORTHO05D006030 3.5e-127 458.8 293 74.4
AT3G05100 Arabidopsis thaliana HOM05D004868 ORTHO05D006030 3.5e-127 458.8 325 68.9
Thhalv10004543m.g Eutrema salsugineum HOM05D004868 ORTHO05D006030 7.7e-127 457.6 322 70.2
Lsat_1_v5_gn_9_40320 Lactuca sativa HOM05D004868 ORTHO05D006030 1.3e-126 456.8 262 80.2
Ah.04g160130 Amaranthus hybridus HOM05D004868 ORTHO05D006030 2.2e-126 456.1 272 78.3
HanXRQChr14g0447091 Helianthus annuus HOM05D004868 ORTHO05D006030 2.2e-126 456.1 285 76.1
CANSAT54G1013 Cannabis sativa HOM05D004868 ORTHO05D006030 2.9e-126 455.7 264 79.5
Prupe.6G337200 Prunus persica HOM05D004868 ORTHO05D006030 1.1e-125 453.8 265 79.2
CiPaw.08G177900 Carya illinoinensis HOM05D004868 ORTHO05D006030 1.5e-125 453.4 265 80.0
TPR.G39359 Trifolium pratense HOM05D004868 ORTHO05D006030 1.5e-125 453.4 299 72.9
EL10Ac4g09208 Beta vulgaris HOM05D004868 ORTHO05D006030 2.5e-125 452.6 272 77.2
BcaB04g21374 Brassica carinata HOM05D004868 ORTHO05D006030 3.2e-125 452.2 323 69.0
BolC5t34872H Brassica oleracea HOM05D004868 ORTHO05D006030 2.1e-124 449.5 315 70.2
Duzib177G0825 Durio zibethinus HOM05D004868 ORTHO05D006030 2.7e-124 449.1 334 68.6
A05p42480 Brassica napus HOM05D004868 ORTHO05D006030 3.6e-124 448.7 321 68.2
BraA05t23004Z Brassica rapa HOM05D004868 ORTHO05D006030 3.6e-124 448.7 321 68.2
VMungo0331G1201 Vigna mungo HOM05D004868 ORTHO05D006030 6.1e-124 448.0 336 67.3
Carub.0006s2543 Capsella rubella HOM05D004868 ORTHO05D006030 1.0e-123 447.2 325 68.0
Aqoxy5G00612 Aquilegia oxysepala HOM05D004868 ORTHO05D006030 1.8e-123 446.4 273 77.3
CSS0000773 Camellia sinensis var. sinensis HOM05D004868 ORTHO05D006030 2.3e-123 446.0 264 78.4
Sp2g20350 Schrenkiella parvula HOM05D004868 ORTHO05D006030 3.0e-123 445.7 312 69.6
Sed0017257 Sechium edule HOM05D004868 ORTHO05D006030 5.2e-123 444.9 319 68.7
Hund07000 Selenicereus undatus HOM05D004868 ORTHO05D006030 6.8e-123 444.5 286 73.8
RcHm_v2.0_Chr3g0452511 Rosa chinensis HOM05D004868 ORTHO05D006030 1.2e-122 443.7 265 77.0
Aa31LG11G8840 Aethionema arabicum HOM05D004868 ORTHO05D006030 2.0e-122 443.0 326 65.6
unitig_8.g3689 Utricularia gibba HOM05D004868 ORTHO05D006030 2.6e-122 442.6 322 66.8
MBI18_g14729_MAGBIO Magnolia biondii HOM05D004868 ORTHO05D006030 5.7e-122 441.4 329 68.7
Eucgr.H04401 Eucalyptus grandis HOM05D004868 ORTHO05D006030 7.5e-122 441.0 323 66.9
Lj9A672G84 Lonicera japonica HOM05D004868 ORTHO05D006030 7.5e-122 441.0 243 82.7
Thecc.05G291500 Theobroma cacao HOM05D004868 ORTHO05D006030 2.8e-121 439.1 338 66.9
GSVIVG01021894001 Vitis vinifera HOM05D004868 ORTHO05D006030 6.3e-121 438.0 243 83.5
C05p62140 Brassica napus HOM05D004868 ORTHO05D006030 3.5e-119 432.2 263 76.0
Zm00001eb110980 Zea mays HOM05D004868 ORTHO05D006030 2.1e-116 422.9 269 75.5
Os07g0667400 Oryza sativa ssp. japonica HOM05D004868 ORTHO05D006030 2.8e-116 422.5 324 65.1
AUR62000953 Chenopodium quinoa HOM05D004868 ORTHO05D006030 3.4e-114 415.6 234 82.5
ATR0618G246 Amborella trichopoda HOM05D004868 ORTHO05D006030 1.1e-112 410.6 261 75.5
Nn4g26018 Nelumbo nucifera HOM05D004868 ORTHO05D006030 9.5e-109 397.5 222 82.9
Lj7C479T1 Lonicera japonica HOM05D004868 ORTHO05D006030 1.6e-108 396.7 218 82.6
Cpa.g.sc117.39 Carica papaya HOM05D004868 ORTHO05D006030 4.7e-108 395.2 215 84.7
Psat7g231080 Pisum sativum HOM05D004868 ORTHO05D006030 6.1e-108 394.8 216 82.4
Sabra13G0033200 Salix brachista HOM05D004868 ORTHO05D006030 8.0e-108 394.4 235 79.6
Dinv02605 Davidia involucrata HOM05D004868 ORTHO05D006030 2.6e-106 389.4 222 81.1
SEGI_16580 Sequoiadendron giganteum HOM05D004868 ORTHO05D006030 1.3e-105 387.1 278 68.3
HPP92_011336 Vanilla planifolia HOM05D004868 ORTHO05D006030 4.9e-105 385.2 317 62.5
vmacro05392 Vaccinium macrocarpon HOM05D004868 ORTHO05D006030 5.4e-104 381.7 221 79.6
HPP92_016882 Vanilla planifolia HOM05D004868 ORTHO05D006030 1.0e-102 377.5 332 59.9
Dinv02602 Davidia involucrata HOM05D004868 ORTHO05D006030 1.6e-100 370.2 209 81.8
SHI18309 Sapria himalayana HOM05D004868 ORTHO05D006030 3.4e-98 362.5 216 76.9
Oeu027042.1 Olea europaea HOM05D004868 ORTHO05D006030 4.4e-98 362.1 297 64.6
SMO203G0024 Selaginella moellendorffii HOM05D004868 ORTHO05D006030 1.9e-93 346.7 306 56.9
AagrBONN_evm.TU.Sc2ySwM_344.3690 Anthoceros agrestis HOM05D004868 ORTHO05D006030 6.0e-87 325.1 324 54.9
Pp3c9_1110 Physcomitrium patens HOM05D004868 ORTHO05D006030 1.3e-81 307.4 233 63.1
TAR365G1069 Trochodendron aralioides HOM05D004868 ORTHO05D006030 2.9e-81 306.2 232 67.7
Dinv17742 Davidia involucrata HOM05D004868 ORTHO05D006030 1.1e-75 287.7 163 82.2
Cpa.g.c47757 Carica papaya HOM05D004868 ORTHO05D006030 9.9e-74 281.2 153 85.6
A06p37760 Brassica napus HOM05D004868 ORTHO05D006030 2.7e-71 273.1 197 68.5
BcaC05g29994 Brassica carinata HOM05D004868 ORTHO05D006030 3.1e-67 259.6 219 60.7
CARHR079420 Cardamine hirsuta HOM05D004868 ORTHO05D006030 4.0e-67 259.2 202 66.8
Nn3g21303 Nelumbo nucifera HOM05D004868 ORTHO05D006030 1.2e-66 257.7 223 61.4
Sc09g0003690 Simmondsia chinensis HOM05D004868 ORTHO05D006030 9.9e-66 254.6 150 78.7
CDE08G0242 Ceratophyllum demersum HOM05D004868 ORTHO05D006030 4.9e-65 252.3 240 59.2
CDE02G4194 Ceratophyllum demersum HOM05D001090 ORTHO05D002687 1.8e-54 217.2 130 76.2
HPP92_028573 Vanilla planifolia HOM05D004868 ORTHO05D006030 2.6e-50 203.4 148 66.9
BcaB04g19280 Brassica carinata HOM05D004868 ORTHO05D006030 3.3e-37 159.8 166 54.8
BcaNung04262 Brassica carinata HOM05D004868 ORTHO05D027635 2.4e-19 100.5 102 54.9
Lsat_1_v5_gn_5_121600 Lactuca sativa HOM05D004868 ORTHO05D027635 2.0e-18 97.4 81 60.5
Lj7C479T9 Lonicera japonica HOM05D004868 ORTHO05D027635 1.7e-17 94.4 99 52.5
BolC1t05715H Brassica oleracea HOM05D004868 ORTHO05D006030 6.3e-12 75.9 49 61.2
SHI18307 Sapria himalayana HOM05D004868 ORTHO05D027635 1.6e-10 71.2 110 41.8


User provided reference genes

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