Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold146G36125 Striga asiatica HOM05D007204 ORTHO05D008593 2.3e-174 615.5 325 100.0
Migut.N00766 Erythranthe guttata HOM05D007204 ORTHO05D008593 4.4e-77 292.4 239 66.1
SGA_v2.0_scaffold120G32948 Striga asiatica HOM05D007204 ORTHO05D008593 3.3e-72 276.2 311 54.0
MSTRG.9779 Avicennia marina HOM05D007204 ORTHO05D008593 2.4e-70 270.0 232 60.8
Nitab4.5_0007880g0040 Nicotiana tabacum HOM05D007204 ORTHO05D008593 2.2e-52 210.3 234 52.1
PGSC0003DMG400030457 Solanum tuberosum HOM05D007204 ORTHO05D008593 1.2e-50 204.5 234 52.1
GSVIVG01024663001 Vitis vinifera HOM05D007204 ORTHO05D008593 3.0e-49 199.9 226 50.9
Peaxi162Scf00390g00079 Petunia axillaris HOM05D007204 ORTHO05D008593 1.9e-48 197.2 242 51.7
TWI31G1133 Tripterygium wilfordii HOM05D007204 ORTHO05D008593 2.8e-47 193.4 232 48.7
Dinv09663 Davidia involucrata HOM05D007204 ORTHO05D008593 4.8e-47 192.6 234 49.6
Cc01_g14730 Coffea canephora HOM05D007204 ORTHO05D008593 1.1e-46 191.4 235 46.0
Duzib168G0028 Durio zibethinus HOM05D007204 ORTHO05D008593 1.1e-46 191.4 233 47.6
Actinidia32616 Actinidia chinensis HOM05D007204 ORTHO05D008593 4.0e-46 189.5 238 47.1
Nn2g10986 Nelumbo nucifera HOM05D007204 ORTHO05D008593 2.0e-45 187.2 232 45.3
SalBow2G2431 Salvia bowleyana HOM05D007204 ORTHO05D008593 3.4e-45 186.4 182 59.3
QL01p040026 Quercus lobata HOM05D007204 ORTHO05D008593 4.5e-45 186.0 235 47.7
PGR102G0940 Punica granatum HOM05D007204 ORTHO05D008593 1.0e-44 184.9 226 47.8
COL.COLO4_11129 Corchorus olitorius HOM05D007204 ORTHO05D008593 2.2e-44 183.7 236 45.8
TPR.G32886 Trifolium pratense HOM05D007204 ORTHO05D008593 1.9e-43 180.6 233 45.5
Thecc.09G355900 Theobroma cacao HOM05D007204 ORTHO05D008593 1.6e-42 177.6 228 46.5
Psat5g153840 Pisum sativum HOM05D007204 ORTHO05D008593 2.1e-42 177.2 235 45.5
Gohir.D03G142400 Gossypium hirsutum HOM05D007204 ORTHO05D008593 3.5e-42 176.4 238 43.3
CiPaw.14G055100 Carya illinoinensis HOM05D007204 ORTHO05D008593 7.9e-42 175.3 232 44.8
Prupe.6G050500 Prunus persica HOM05D007204 ORTHO05D008593 3.0e-41 173.3 240 43.3
Atru.chr3.4133 Acer truncatum HOM05D007204 ORTHO05D008593 5.1e-41 172.6 230 47.4
Sed0020276 Sechium edule HOM05D007204 ORTHO05D008593 6.7e-41 172.2 234 43.2
Gorai.003G149500 Gossypium raimondii HOM05D007204 ORTHO05D008593 3.3e-40 169.9 231 42.9
Oeu034090.2 Olea europaea HOM05D007204 ORTHO05D008593 5.7e-40 169.1 251 43.8
PSO339G1295 Papaver somniferum HOM05D007204 ORTHO05D008593 5.7e-40 169.1 229 44.5
Potri.001G281500 Populus trichocarpa HOM05D007204 ORTHO05D008593 5.7e-40 169.1 228 45.6
Lsat_1_v5_gn_9_18401 Lactuca sativa HOM05D007204 ORTHO05D008593 2.1e-39 167.2 234 43.6
Nitab4.5_0009741g0040 Nicotiana tabacum HOM05D007204 ORTHO05D008593 2.1e-39 167.2 293 40.6
MD11G1063300 Malus domestica HOM05D007204 ORTHO05D008593 4.8e-39 166.0 249 43.0
Lj6g0005890 Lotus japonicus HOM05D007204 ORTHO05D008593 1.1e-38 164.9 227 43.6
MELO3C026086.2 Cucumis melo HOM05D007204 ORTHO05D008593 1.4e-38 164.5 226 45.6
FvH4_3g39530 Fragaria vesca HOM05D007204 ORTHO05D008593 1.4e-38 164.5 239 43.1
HanXRQChr08g0229231 Helianthus annuus HOM05D007204 ORTHO05D008593 1.8e-38 164.1 227 46.7
Sc21g0005220 Simmondsia chinensis HOM05D007204 ORTHO05D008593 1.8e-38 164.1 225 45.3
unitig_94.g28350 Utricularia gibba HOM05D007204 ORTHO05D008593 1.8e-38 164.1 217 47.9
FAN16G2350 Fragaria x ananassa HOM05D007204 ORTHO05D008593 3.1e-38 163.3 239 42.3
PSO801G0770 Papaver somniferum HOM05D007204 ORTHO05D008593 5.3e-38 162.5 220 44.5
RcHm_v2.0_Chr5g0071301 Rosa chinensis HOM05D007204 ORTHO05D008593 5.3e-38 162.5 236 41.9
Phvul.006G073000 Phaseolus vulgaris HOM05D007204 ORTHO05D008593 6.9e-38 162.2 231 42.9
CsaV3_1G015330 Cucumis sativus L. HOM05D007204 ORTHO05D008593 1.2e-37 161.4 226 44.7
DCAR_012274 Daucus carota HOM05D007204 ORTHO05D008593 2.0e-37 160.6 183 51.4
AUR62009682 Chenopodium quinoa HOM05D007204 ORTHO05D008593 2.6e-37 160.2 228 43.0
Manes.17G034600 Manihot esculenta HOM05D007204 ORTHO05D008593 3.4e-37 159.8 223 43.5
AL1G17180 Arabidopsis lyrata HOM05D007204 ORTHO05D008593 7.6e-37 158.7 235 40.9
FAN25G1877 Fragaria x ananassa HOM05D007204 ORTHO05D008593 1.3e-36 157.9 239 41.4
Medtr3g031680 Medicago truncatula HOM05D007204 ORTHO05D008593 2.9e-36 156.8 185 48.1
VMungo0540G1924 Vigna mungo HOM05D007204 ORTHO05D008593 2.9e-36 156.8 244 42.2
AT1G07060 Arabidopsis thaliana HOM05D007204 ORTHO05D008593 8.5e-36 155.2 235 40.9
BcaNung06767 Brassica carinata HOM05D007204 ORTHO05D008593 8.5e-36 155.2 235 40.0
arahy.Tifrunner.gnm1.ann1.QCA2Y7 Arachis hypogaea HOM05D007204 ORTHO05D008593 1.4e-35 154.5 243 39.9
Cfa011760 Carpinus fangiana HOM05D007204 ORTHO05D008593 1.4e-35 154.5 199 48.2
ClCG03G000270 Citrullus lanatus HOM05D007204 ORTHO05D008593 1.4e-35 154.5 238 44.1
Hma1.2p1_0841F.1_g226930 Hydrangea macrophylla HOM05D007204 ORTHO05D008593 1.4e-35 154.5 164 52.4
BcaC05g24670 Brassica carinata HOM05D007204 ORTHO05D008593 2.5e-35 153.7 235 40.4
A10p05600 Brassica napus HOM05D007204 ORTHO05D008593 2.5e-35 153.7 235 40.9
arahy.Tifrunner.gnm1.ann1.IVNQ32 Arachis hypogaea HOM05D007204 ORTHO05D008593 3.2e-35 153.3 254 38.6
Rhsim13G0065200 Rhododendron simsii HOM05D007204 ORTHO05D008593 5.5e-35 152.5 295 38.0
C05p05140 Brassica napus HOM05D007204 ORTHO05D008593 7.2e-35 152.1 235 40.0
Gohir.A03G026100 Gossypium hirsutum HOM05D007204 ORTHO05D008593 1.6e-34 151.0 180 47.2
CARHR006750 Cardamine hirsuta HOM05D007204 ORTHO05D008593 2.1e-34 150.6 235 40.4
THA.LOC104800761 Tarenaya hassleriana HOM05D007204 ORTHO05D008593 2.1e-34 150.6 237 41.4
HPP92_019711 Vanilla planifolia HOM05D000883 ORTHO05D002942 4.6e-34 149.4 232 38.8
Eucgr.B03990 Eucalyptus grandis HOM05D007204 ORTHO05D008593 6.1e-34 149.1 231 42.4
Medtr3g031720 Medicago truncatula HOM05D007204 ORTHO05D008593 6.1e-34 149.1 185 46.5
Aa31LG1G8110 Aethionema arabicum HOM05D007204 ORTHO05D008593 7.9e-34 148.7 236 39.4
Aqoxy2G00798 Aquilegia oxysepala HOM05D007204 ORTHO05D008593 1.8e-33 147.5 180 46.7
FAN21G2638 Fragaria x ananassa HOM05D007204 ORTHO05D008593 1.8e-33 147.5 204 44.6
TAR623G0341 Trochodendron aralioides HOM05D007204 ORTHO05D008593 3.0e-33 146.7 181 48.1
CANSAT54G2573 Cannabis sativa HOM05D007204 ORTHO05D008593 3.9e-33 146.4 201 44.3
Ciclev10029273m.g Citrus clementina HOM05D007204 ORTHO05D008593 8.7e-33 145.2 189 43.9
Solyc06g082320.4 Solanum lycopersicum HOM05D007204 ORTHO05D008593 1.5e-32 144.4 134 61.2
Carub.0001s0635 Capsella rubella HOM05D007204 ORTHO05D008593 1.9e-32 144.1 231 39.4
Sp1g05780 Schrenkiella parvula HOM05D007204 ORTHO05D008593 2.5e-32 143.7 236 39.0
BraA10t42821Z Brassica rapa HOM05D007204 ORTHO05D008593 3.3e-32 143.3 259 37.5
AUR62001886 Chenopodium quinoa HOM05D007204 ORTHO05D008593 5.7e-32 142.5 257 38.9
Hund18956 Selenicereus undatus HOM05D007204 ORTHO05D008593 2.2e-31 140.6 213 41.8
Thhalv10009490m.g Eutrema salsugineum HOM05D007204 ORTHO05D008593 3.7e-31 139.8 207 41.5
BolC5t29286H Brassica oleracea HOM05D007204 ORTHO05D008593 1.4e-30 137.9 259 36.7
FAN11G3207 Fragaria x ananassa HOM05D007204 ORTHO05D008593 1.8e-30 137.5 207 42.0
BcaNung06763 Brassica carinata HOM05D007204 ORTHO05D008593 2.4e-30 137.1 256 36.7
Glyma.18G058101 Glycine max HOM05D007204 ORTHO05D008593 5.9e-29 132.5 134 54.5
MBI03_g33621_MAGBIO Magnolia biondii HOM05D007204 ORTHO05D008593 5.0e-28 129.4 311 32.5
ECA247G3086 Erigeron canadensis HOM05D007204 ORTHO05D008593 2.7e-26 123.6 337 30.0
Lalb_Chr15g0083171 Lupinus albus HOM05D007204 ORTHO05D008593 1.0e-25 121.7 145 51.0
Lj2A1091T48 Lonicera japonica HOM05D007204 ORTHO05D008593 1.8e-25 120.9 115 56.5
Sabra16G0175100 Salix brachista HOM05D007204 ORTHO05D008593 6.3e-23 112.5 228 36.0
Zm00001eb195020 Zea mays HOM05D007204 ORTHO05D008593 1.8e-22 110.9 240 32.5
ATR0174G030 Amborella trichopoda HOM05D007204 ORTHO05D008593 2.4e-22 110.5 178 37.6
BcaC05g24674 Brassica carinata HOM05D007204 ORTHO05D008593 2.4e-22 110.5 184 37.5
Os12g0106100 Oryza sativa ssp. japonica HOM05D007204 ORTHO05D008593 2.0e-21 107.5 221 34.8
Os11g0106800 Oryza sativa ssp. japonica HOM05D007204 ORTHO05D008593 1.9e-19 100.9 231 32.9
vmacro02927 Vaccinium macrocarpon HOM05D007204 ORTHO05D008593 4.7e-18 96.3 191 37.7
CSS0041349 Camellia sinensis var. sinensis HOM05D007204 ORTHO05D008593 2.0e-16 90.9 128 41.4
Sopen06g033710 Solanum pennellii HOM05D007204 ORTHO05D008593 2.6e-16 90.5 135 41.5
CSS0017241 Camellia sinensis var. sinensis HOM05D007204 ORTHO05D008593 3.3e-16 90.1 122 41.8
SEGI_02179 Sequoiadendron giganteum HOM05D056589 ORTHO05D008593 3.3e-16 90.1 210 31.0
SGA_v2.0_scaffold120G32947 Striga asiatica HOM05D004233 ORTHO05D003507 6.5e-12 75.9 47 76.6
Ca_05090_v3 Cicer arietinum L. HOM05D007204 ORTHO05D008593 3.6e-10 70.1 86 44.2
Ca_14995_v3 Cicer arietinum L. HOM05D007204 ORTHO05D008593 3.6e-10 70.1 86 44.2
SalBow2G0796 Salvia bowleyana HOM05D004233 ORTHO05D003507 1.5e-08 64.7 51 64.7
SMO358G0161 Selaginella moellendorffii HOM05D007204 ORTHO05D008593 2.0e-08 64.3 240 27.1
Cc01_g13980 Coffea canephora HOM05D004233 ORTHO05D003507 6.3e-07 59.3 38 73.7
TPR.G444 Trifolium pratense HOM05D007204 ORTHO05D008593 8.2e-07 58.9 51 56.9
Oeu045519.1 Olea europaea HOM05D004233 ORTHO05D003507 2.4e-06 57.4 35 71.4
TPR.G22099 Trifolium pratense HOM05D007204 ORTHO05D008593 4.1e-06 56.6 118 34.7
Zm00001eb025660 Zea mays HOM05D007204 ORTHO05D008593 5.3e-06 56.2 95 32.6


User provided reference genes

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