Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold146G36123 Striga asiatica HOM05D004740 ORTHO05D005991 1.2e-203 713.0 378 100.0
MSTRG.17889 Avicennia marina HOM05D004740 ORTHO05D005991 4.8e-184 647.9 377 90.2
SalBow2G1640 Salvia bowleyana HOM05D004740 ORTHO05D005991 2.7e-182 642.1 378 89.7
Migut.N00764 Erythranthe guttata HOM05D004740 ORTHO05D005991 2.7e-179 632.1 378 89.4
vmacro02923 Vaccinium macrocarpon HOM05D004740 ORTHO05D005991 5.9e-174 614.4 379 85.8
Nitab4.5_0002737g0070 Nicotiana tabacum HOM05D004740 ORTHO05D005991 1.5e-169 599.7 377 84.4
Rhsim13G0064700 Rhododendron simsii HOM05D004740 ORTHO05D005991 1.3e-168 596.7 379 83.9
TAR623G0659 Trochodendron aralioides HOM05D004740 ORTHO05D005991 2.4e-167 592.4 381 82.2
Dinv28694 Davidia involucrata HOM05D004740 ORTHO05D005991 3.1e-167 592.0 380 82.9
Nitab4.5_0001121g0110 Nicotiana tabacum HOM05D004740 ORTHO05D005991 2.0e-166 589.3 377 83.0
CSS0045632 Camellia sinensis var. sinensis HOM05D004740 ORTHO05D005991 5.9e-166 587.8 381 82.9
CiPaw.13G069800 Carya illinoinensis HOM05D004740 ORTHO05D005991 1.3e-165 586.6 379 82.1
Lj2A1092T52 Lonicera japonica HOM05D004740 ORTHO05D005991 2.3e-165 585.9 378 82.0
PGSC0003DMG400021362 Solanum tuberosum HOM05D004740 ORTHO05D005991 1.9e-164 582.8 346 87.6
Solyc01g006980.4 Solanum lycopersicum HOM05D004740 ORTHO05D005991 2.5e-164 582.4 346 87.3
Sopen01g002970 Solanum pennellii HOM05D004740 ORTHO05D005991 3.3e-164 582.0 346 87.0
unitig_60.g25555 Utricularia gibba HOM05D004740 ORTHO05D005991 8.0e-163 577.4 378 81.0
CAN.G911.42 Capsicum annuum HOM05D004740 ORTHO05D005991 1.4e-162 576.6 351 87.2
Peaxi162Scf00055g00057 Petunia axillaris HOM05D004740 ORTHO05D005991 1.4e-162 576.6 347 86.2
Haze_24407 Corylus avellana HOM05D004740 ORTHO05D005991 3.4e-161 572.0 379 81.3
MELO3C020514.2 Cucumis melo HOM05D004740 ORTHO05D005991 4.4e-161 571.6 379 81.3
CsaV3_1G036540 Cucumis sativus L. HOM05D004740 ORTHO05D005991 4.4e-161 571.6 379 81.5
Manes.18G127700 Manihot esculenta HOM05D004740 ORTHO05D005991 7.5e-161 570.9 378 79.4
TWI75G0989 Tripterygium wilfordii HOM05D004740 ORTHO05D005991 2.2e-160 569.3 375 80.3
Sed0001589 Sechium edule HOM05D004740 ORTHO05D005991 2.9e-160 568.9 379 80.5
Ah.15g096090 Amaranthus hybridus HOM05D004740 ORTHO05D005991 3.7e-160 568.5 379 78.6
QL01p026440 Quercus lobata HOM05D004740 ORTHO05D005991 1.1e-159 567.0 378 80.7
EL10Ac7g15913 Beta vulgaris HOM05D004740 ORTHO05D005991 1.8e-159 566.2 381 78.0
HanXRQChr01g0012131 Helianthus annuus HOM05D004740 ORTHO05D005991 1.8e-159 566.2 376 80.9
ClCG03G000380 Citrullus lanatus HOM05D004740 ORTHO05D005991 3.2e-159 565.5 413 75.5
Sc12g0002010 Simmondsia chinensis HOM05D004740 ORTHO05D005991 4.1e-159 565.1 381 79.8
arahy.Tifrunner.gnm1.ann1.MX8U3M Arachis hypogaea HOM05D004740 ORTHO05D005991 5.4e-159 564.7 377 79.8
Thecc.09G357100 Theobroma cacao HOM05D004740 ORTHO05D005991 5.4e-159 564.7 377 80.1
PGR102G2346 Punica granatum HOM05D004740 ORTHO05D005991 7.0e-159 564.3 383 79.6
COL.COLO4_11143 Corchorus olitorius HOM05D004740 ORTHO05D005991 9.2e-159 563.9 337 87.5
PSO339G6109 Papaver somniferum HOM05D004740 ORTHO05D005991 9.2e-159 563.9 379 78.9
Cfa011772 Carpinus fangiana HOM05D004740 ORTHO05D005991 1.6e-158 563.1 361 83.1
Ciclev10028558m.g Citrus clementina HOM05D004740 ORTHO05D005991 1.6e-158 563.1 376 79.3
FvH4_3g39690 Fragaria vesca HOM05D004740 ORTHO05D005991 2.0e-158 562.8 337 85.5
Gohir.A03G025700 Gossypium hirsutum HOM05D004740 ORTHO05D005991 2.7e-158 562.4 375 81.1
Gorai.003G150000 Gossypium raimondii HOM05D004740 ORTHO05D005991 2.7e-158 562.4 337 86.6
arahy.Tifrunner.gnm1.ann1.FJ253B Arachis hypogaea HOM05D004740 ORTHO05D005991 4.6e-158 561.6 377 79.6
arahy.Tifrunner.gnm1.ann1.T9C115 Arachis hypogaea HOM05D004740 ORTHO05D005991 4.6e-158 561.6 377 79.3
Duzib168G1324 Durio zibethinus HOM05D004740 ORTHO05D005991 4.6e-158 561.6 377 79.8
PSO801G0690 Papaver somniferum HOM05D004740 ORTHO05D005991 5.9e-158 561.2 379 78.6
RcHm_v2.0_Chr5g0071571 Rosa chinensis HOM05D004740 ORTHO05D005991 1.0e-157 560.5 375 79.2
Potri.009G077800 Populus trichocarpa HOM05D004740 ORTHO05D005991 1.3e-157 560.1 378 78.6
Gohir.D03G142800 Gossypium hirsutum HOM05D004740 ORTHO05D005991 2.5e-156 555.8 375 80.3
Hund29009 Selenicereus undatus HOM05D004740 ORTHO05D005991 2.5e-156 555.8 361 81.2
Hund29013 Selenicereus undatus HOM05D004740 ORTHO05D005991 2.5e-156 555.8 361 81.2
CANSAT54G2578 Cannabis sativa HOM05D004740 ORTHO05D005991 7.3e-156 554.3 378 77.0
MD11G1056800 Malus domestica HOM05D004740 ORTHO05D005991 7.3e-156 554.3 379 79.7
THA.LOC104826277 Tarenaya hassleriana HOM05D004740 ORTHO05D005991 9.5e-156 553.9 378 76.7
Eucgr.J01859 Eucalyptus grandis HOM05D004740 ORTHO05D005991 1.2e-155 553.5 385 77.7
MD03G1055800 Malus domestica HOM05D004740 ORTHO05D005991 2.8e-155 552.4 379 79.4
TAR633G1387 Trochodendron aralioides HOM05D004740 ORTHO05D005991 2.8e-155 552.4 329 87.2
Prupe.6G048900 Prunus persica HOM05D004740 ORTHO05D005991 6.2e-155 551.2 379 77.8
Glyma.18G057700 Glycine max HOM05D004740 ORTHO05D005991 8.0e-155 550.8 337 85.2
Nn2g13251 Nelumbo nucifera HOM05D004740 ORTHO05D005991 8.0e-155 550.8 360 81.4
Sabra09G0059400 Salix brachista HOM05D004740 ORTHO05D005991 1.0e-154 550.4 379 77.3
FAN11G1726 Fragaria x ananassa HOM05D004740 ORTHO05D005991 1.8e-154 549.7 360 80.0
FAN16G0900 Fragaria x ananassa HOM05D004740 ORTHO05D005991 1.8e-154 549.7 360 80.0
FAN25G0671 Fragaria x ananassa HOM05D004740 ORTHO05D005991 1.8e-154 549.7 360 80.0
Sp4g12790 Schrenkiella parvula HOM05D004740 ORTHO05D005991 1.8e-154 549.7 377 78.0
CDE06G2756 Ceratophyllum demersum HOM05D004740 ORTHO05D005991 2.3e-154 549.3 349 81.7
ECA248G3413 Erigeron canadensis HOM05D004740 ORTHO05D005991 2.3e-154 549.3 392 76.0
Thhalv10016751m.g Eutrema salsugineum HOM05D004740 ORTHO05D005991 2.3e-154 549.3 376 78.2
CARHR123500 Cardamine hirsuta HOM05D004740 ORTHO05D005991 3.1e-154 548.9 377 77.7
Aqoxy2G00789 Aquilegia oxysepala HOM05D004740 ORTHO05D005991 4.0e-154 548.5 386 77.5
THA.LOC104800771 Tarenaya hassleriana HOM05D004740 ORTHO05D005991 4.0e-154 548.5 372 79.0
AT2G30200 Arabidopsis thaliana HOM05D004740 ORTHO05D005991 5.2e-154 548.1 377 77.7
DCAR_018228 Daucus carota HOM05D004740 ORTHO05D005991 5.2e-154 548.1 384 77.1
AL4G25030 Arabidopsis lyrata HOM05D004740 ORTHO05D005991 6.8e-154 547.7 377 77.5
Carub.0004s1135 Capsella rubella HOM05D004740 ORTHO05D005991 8.9e-154 547.4 377 77.5
AUR62001878 Chenopodium quinoa HOM05D004740 ORTHO05D005991 1.5e-153 546.6 385 75.8
Lalb_Chr18g0051371 Lupinus albus HOM05D004740 ORTHO05D005991 1.5e-153 546.6 378 76.7
FAN21G3316 Fragaria x ananassa HOM05D004740 ORTHO05D005991 5.8e-153 544.7 374 77.0
FAN21G3649 Fragaria x ananassa HOM05D004740 ORTHO05D005991 5.8e-153 544.7 374 77.0
Lj6g0008641 Lotus japonicus HOM05D004740 ORTHO05D005991 9.8e-153 543.9 370 78.4
A05p15240 Brassica napus HOM05D004740 ORTHO05D005991 1.3e-152 543.5 340 83.5
AUR62009675 Chenopodium quinoa HOM05D004740 ORTHO05D005991 1.7e-152 543.1 385 75.1
BcaB02g10307 Brassica carinata HOM05D004740 ORTHO05D005991 3.7e-152 542.0 371 77.1
BolC3t14364H Brassica oleracea HOM05D004740 ORTHO05D005991 3.7e-152 542.0 377 76.7
BraA05t20443Z Brassica rapa HOM05D004740 ORTHO05D005991 4.9e-152 541.6 378 77.5
HanXRQChr01g0012161 Helianthus annuus HOM05D004740 ORTHO05D005991 6.4e-152 541.2 380 77.6
Aa31LG5G6500 Aethionema arabicum HOM05D004740 ORTHO05D005991 1.4e-151 540.0 386 75.1
BolC4t23568H Brassica oleracea HOM05D004740 ORTHO05D005991 2.4e-151 539.3 378 77.2
Medtr3g031380 Medicago truncatula HOM05D004740 ORTHO05D005991 2.4e-151 539.3 375 77.6
C04p59110 Brassica napus HOM05D004740 ORTHO05D005991 3.2e-151 538.9 377 76.7
BolC4t27422H Brassica oleracea HOM05D004740 ORTHO05D005991 3.2e-151 538.9 377 76.7
BraA04t17832Z Brassica rapa HOM05D004740 ORTHO05D005991 3.2e-151 538.9 377 76.7
Phvul.006G073300 Phaseolus vulgaris HOM05D004740 ORTHO05D005991 3.2e-151 538.9 338 83.1
BcaC02g11103 Brassica carinata HOM05D004740 ORTHO05D005991 4.1e-151 538.5 377 76.7
Ca_15002_v3 Cicer arietinum L. HOM05D004740 ORTHO05D005991 1.2e-150 537.0 378 76.5
BcaC02g08041 Brassica carinata HOM05D004740 ORTHO05D005991 1.6e-150 536.6 377 76.1
C04p20390 Brassica napus HOM05D004740 ORTHO05D005991 1.6e-150 536.6 378 76.5
Glyma.11G164500 Glycine max HOM05D004740 ORTHO05D005991 1.6e-150 536.6 338 82.0
Psat5g153440 Pisum sativum HOM05D004740 ORTHO05D005991 2.7e-150 535.8 375 76.0
Os03g0297400 Oryza sativa ssp. japonica HOM05D004740 ORTHO05D005991 4.6e-150 535.0 335 82.7
Lalb_Chr15g0083211 Lupinus albus HOM05D004740 ORTHO05D005991 3.0e-149 532.3 378 75.1
HPP92_013770 Vanilla planifolia HOM05D004740 ORTHO05D005991 3.9e-149 531.9 333 82.3
VMungo0540G0639 Vigna mungo HOM05D004740 ORTHO05D005991 3.9e-149 531.9 338 82.5
Lsat_1_v5_gn_5_174621 Lactuca sativa HOM05D004740 ORTHO05D005991 7.3e-148 527.7 407 72.2
Cc01_g14810 Coffea canephora HOM05D004740 ORTHO05D005991 9.5e-148 527.3 297 92.3
BcaB06g28350 Brassica carinata HOM05D004740 ORTHO05D005991 1.6e-147 526.6 377 74.5
arahy.Tifrunner.gnm1.ann1.C8ZV0S Arachis hypogaea HOM05D004740 ORTHO05D005991 4.7e-147 525.0 387 74.2
Actinidia32613 Actinidia chinensis HOM05D004740 ORTHO05D005991 3.1e-146 522.3 379 76.0
MBI05_g35601_MAGBIO Magnolia biondii HOM05D004740 ORTHO05D005991 1.2e-145 520.4 372 76.3
Zm00001eb013760 Zea mays HOM05D004740 ORTHO05D005991 1.2e-145 520.4 331 79.8
TPR.G35611 Trifolium pratense HOM05D004740 ORTHO05D005991 1.0e-141 507.3 307 84.7
ATR0594G208 Amborella trichopoda HOM05D004740 ORTHO05D005991 1.7e-141 506.5 297 87.9
SEGI_23058 Sequoiadendron giganteum HOM05D004740 ORTHO05D005991 3.0e-141 505.8 391 70.3
CiPaw.14G054500 Carya illinoinensis HOM05D004740 ORTHO05D005991 2.1e-139 499.6 297 85.2
BcaC01g06023 Brassica carinata HOM05D004740 ORTHO05D005991 1.7e-136 490.0 377 72.1
Mapoly0009s0078 Marchantia polymorpha HOM05D004740 ORTHO05D005991 2.2e-136 489.6 326 77.3
BcaB01g04122 Brassica carinata HOM05D004740 ORTHO05D005991 2.9e-136 489.2 377 71.9
Pp3c20_19160 Physcomitrium patens HOM05D004740 ORTHO05D005991 3.2e-135 485.7 335 75.2
Sed0003355 Sechium edule HOM05D004740 ORTHO05D005991 1.3e-133 480.3 334 74.9
AagrBONN_evm.TU.Sc2ySwM_228.2654 Anthoceros agrestis HOM05D004740 ORTHO05D005991 7.3e-132 474.6 333 72.7
SHI19203 Sapria himalayana HOM05D004740 ORTHO05D005991 2.9e-128 462.6 426 62.2
C03p19860 Brassica napus HOM05D004740 ORTHO05D005991 6.4e-128 461.5 328 75.3
A04p22970 Brassica napus HOM05D004740 ORTHO05D005991 7.1e-127 458.0 327 75.5
Atru.chr3.4126 Acer truncatum HOM05D004740 ORTHO05D005991 3.5e-126 455.7 386 68.1
SMO200G0259 Selaginella moellendorffii HOM05D004740 ORTHO05D005991 6.0e-126 454.9 317 73.2
Nn2g10995 Nelumbo nucifera HOM05D004740 ORTHO05D005991 1.8e-122 443.4 379 68.3
arahy.Tifrunner.gnm1.ann1.R7F6LC Arachis hypogaea HOM05D004740 ORTHO05D005991 5.6e-116 421.8 272 82.4
Cpa.g.sc2.364 Carica papaya HOM05D004740 ORTHO05D005991 2.8e-115 419.5 246 89.4
Cre14.g621650 Chlamydomonas reinhardtii HOM05D004740 ORTHO05D005991 5.8e-113 411.8 322 67.7
Potri.001G282600 Populus trichocarpa HOM05D004740 ORTHO05D005991 1.5e-108 397.1 324 67.6
CBR_g33923 Chara braunii HOM05D004740 ORTHO05D005991 1.6e-107 393.7 349 59.9
PRCOL_00005899 Prasinoderma coloniale HOM05D004740 ORTHO05D005991 1.0e-104 384.4 289 66.8
MCO01G413 Micromonas commoda HOM05D004740 ORTHO05D005991 1.0e-96 357.8 332 57.5
GSVIVG01024639001 Vitis vinifera HOM05D004740 ORTHO05D005991 1.0e-88 331.3 198 87.4
A03p16880 Brassica napus HOM05D004740 ORTHO05D005991 3.6e-78 296.2 198 79.8
BraA03t10976Z Brassica rapa HOM05D004740 ORTHO05D005991 3.6e-78 296.2 198 79.8
Oeu005355.3 Olea europaea HOM05D003290 ORTHO05D005991 3.0e-77 293.1 165 90.9
Actinidia23202 Actinidia chinensis HOM05D004740 ORTHO05D005991 9.4e-71 271.6 379 48.5
PRCOL_00000466 Prasinoderma coloniale HOM05D004740 ORTHO05D005991 9.1e-66 255.0 294 46.6
MCO04G051 Micromonas commoda HOM05D004740 ORTHO05D005991 4.1e-58 229.6 311 43.1
GSVIVG01024638001 Vitis vinifera HOM05D004740 ORTHO05D005991 5.9e-57 225.7 131 87.8
Cre02.g088250 Chlamydomonas reinhardtii HOM05D004740 ORTHO05D005991 4.0e-53 213.0 324 40.7
Actinidia02620 Actinidia chinensis HOM05D004740 ORTHO05D005991 3.4e-52 209.9 154 73.4
COL.COLO4_24546 Corchorus olitorius HOM05D004740 ORTHO05D008255 5.9e-49 199.1 200 62.0
Nitab4.5_0006359g0020 Nicotiana tabacum HOM05D004740 ORTHO05D005991 2.1e-46 190.7 178 60.7
Oeu025052.1 Olea europaea HOM05D004740 ORTHO05D005991 1.6e-41 174.5 132 70.5
Nitab4.5_0000644g0120 Nicotiana tabacum HOM05D004740 ORTHO05D005991 1.2e-38 164.9 149 63.1
Nitab4.5_0006126g0030 Nicotiana tabacum HOM05D004740 ORTHO05D005991 4.4e-36 156.4 213 48.4
Zm00001eb396720 Zea mays HOM05D004740 ORTHO05D444996 2.0e-28 131.0 80 81.2
HPP92_013838 Vanilla planifolia HOM05D004740 ORTHO05D005991 2.6e-28 130.6 87 72.4
MBI10_g37352_MAGBIO Magnolia biondii HOM05D004740 ORTHO05D241996 4.6e-17 93.2 75 68.0
Nitab4.5_0000644g0100 Nicotiana tabacum HOM05D004740 ORTHO05D284956 2.6e-12 77.4 47 80.9
VMungo0331G0938 Vigna mungo HOM05D000577 ORTHO05D001093 1.7e-11 74.7 64 65.6
COL.COLO4_37924 Corchorus olitorius HOM05D004740 ORTHO05D005991 2.2e-11 74.3 55 70.9
HPP92_012003 Vanilla planifolia HOM05D004740 ORTHO05D429499 3.8e-11 73.6 90 47.8
Carub.0004s1136 Capsella rubella HOM05D004740 ORTHO05D005991 1.9e-10 71.2 42 73.8
MBI15_g35007_MAGBIO Magnolia biondii HOM05D000363 ORTHO05D017376 2.3e-08 64.3 42 78.6


User provided reference genes

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