Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold146G36120 Striga asiatica HOM05D004875 ORTHO05D005598 0.0e+00 1979.1 1003 100.0
SalBow2G1321 Salvia bowleyana HOM05D004875 ORTHO05D005598 0.0e+00 1567.0 1009 79.6
MSTRG.12688 Avicennia marina HOM05D004875 ORTHO05D005598 0.0e+00 1554.7 1013 78.5
Migut.N00759 Erythranthe guttata HOM05D004875 ORTHO05D005598 0.0e+00 1475.7 1013 74.7
CSS0009670 Camellia sinensis var. sinensis HOM05D004875 ORTHO05D005598 0.0e+00 1382.5 1013 69.1
Cc01_g14850 Coffea canephora HOM05D004875 ORTHO05D000053 0.0e+00 1381.7 997 71.0
Hma1.2p1_1692F.1_g297880 Hydrangea macrophylla HOM05D004875 ORTHO05D005598 0.0e+00 1362.8 1014 68.0
CSS0036828 Camellia sinensis var. sinensis HOM05D004875 ORTHO05D005598 0.0e+00 1343.2 1001 67.6
QL01p026245 Quercus lobata HOM05D004875 ORTHO05D005598 0.0e+00 1329.7 1013 66.6
Potri.013G152800 Populus trichocarpa HOM05D004875 ORTHO05D005598 0.0e+00 1318.9 1013 65.8
vmacro02918 Vaccinium macrocarpon HOM05D004875 ORTHO05D005598 0.0e+00 1313.9 1061 64.0
Actinidia23196 Actinidia chinensis HOM05D004875 ORTHO05D005598 0.0e+00 1308.5 1008 65.9
MD11G1058300 Malus domestica HOM05D004875 ORTHO05D005598 0.0e+00 1308.1 1013 65.4
Thecc.09G357800 Theobroma cacao HOM05D004875 ORTHO05D005598 0.0e+00 1307.7 1012 66.0
DCAR_018231 Daucus carota HOM05D004875 ORTHO05D005598 0.0e+00 1305.0 1014 65.2
Lj1C127G1 Lonicera japonica HOM05D004875 ORTHO05D005598 0.0e+00 1302.3 1022 65.6
CiPaw.13G069200 Carya illinoinensis HOM05D004875 ORTHO05D005598 0.0e+00 1299.6 1013 65.1
MD03G1056500 Malus domestica HOM05D004875 ORTHO05D005598 0.0e+00 1298.9 1013 65.2
RcHm_v2.0_Chr5g0071641 Rosa chinensis HOM05D004875 ORTHO05D005598 0.0e+00 1295.8 1006 65.5
COL.COLO4_11154 Corchorus olitorius HOM05D004875 ORTHO05D005598 0.0e+00 1291.6 1012 65.2
Sopen09g013270 Solanum pennellii HOM05D004875 ORTHO05D005598 0.0e+00 1290.4 1015 65.1
Rhsim13G0064100 Rhododendron simsii HOM05D004875 ORTHO05D005598 0.0e+00 1290.0 1032 64.4
FvH4_3g39760 Fragaria vesca HOM05D004875 ORTHO05D005598 0.0e+00 1288.9 1014 64.5
Gorai.009G113500 Gossypium raimondii HOM05D004875 ORTHO05D005598 0.0e+00 1286.6 1013 64.9
GSVIVG01024634001 Vitis vinifera HOM05D004875 ORTHO05D005598 0.0e+00 1286.6 988 66.1
Cfa011778 Carpinus fangiana HOM05D004875 ORTHO05D005598 0.0e+00 1285.8 1016 64.6
FAN21G2306 Fragaria x ananassa HOM05D004875 ORTHO05D005598 0.0e+00 1279.2 1020 63.9
CANSAT54G1540 Cannabis sativa HOM05D004875 ORTHO05D005598 0.0e+00 1277.7 1012 63.9
FAN11G0831 Fragaria x ananassa HOM05D004875 ORTHO05D005598 0.0e+00 1277.7 1014 64.0
Haze_24411 Corylus avellana HOM05D004875 ORTHO05D005598 0.0e+00 1274.6 1078 61.3
Lsat_1_v5_gn_9_14720 Lactuca sativa HOM05D004875 ORTHO05D005598 0.0e+00 1273.5 1013 64.6
TAR633G2039 Trochodendron aralioides HOM05D004875 ORTHO05D005598 0.0e+00 1273.5 1014 64.4
Prupe.6G048400 Prunus persica HOM05D004875 ORTHO05D005598 0.0e+00 1272.3 988 65.1
HanXRQChr08g0228771 Helianthus annuus HOM05D004875 ORTHO05D005598 0.0e+00 1271.5 1016 64.8
FAN16G0994 Fragaria x ananassa HOM05D004875 ORTHO05D005598 0.0e+00 1270.4 1000 64.5
FAN25G2145 Fragaria x ananassa HOM05D004875 ORTHO05D005598 0.0e+00 1265.0 1000 64.2
ECA247G1423 Erigeron canadensis HOM05D004875 ORTHO05D005598 0.0e+00 1257.3 1008 63.3
Duzib168G1610 Durio zibethinus HOM05D004875 ORTHO05D005598 0.0e+00 1255.4 1012 63.9
Manes.02G211800 Manihot esculenta HOM05D004875 ORTHO05D005598 0.0e+00 1252.7 1014 63.9
Ciclev10030286m.g Citrus clementina HOM05D004875 ORTHO05D005598 0.0e+00 1251.1 1013 63.0
HanXRQChr13g0386431 Helianthus annuus HOM05D004875 ORTHO05D005598 0.0e+00 1242.6 1006 63.7
Aqoxy1G01286 Aquilegia oxysepala HOM05D004875 ORTHO05D005598 0.0e+00 1238.8 1013 61.4
Lalb_Chr20g0114691 Lupinus albus HOM05D004875 ORTHO05D005598 0.0e+00 1233.0 1014 61.7
arahy.Tifrunner.gnm1.ann1.7Z8DLY Arachis hypogaea HOM05D004875 ORTHO05D005598 0.0e+00 1224.9 1014 60.4
arahy.Tifrunner.gnm1.ann1.LY55DJ Arachis hypogaea HOM05D004875 ORTHO05D005598 0.0e+00 1224.5 1014 60.3
Sed0004894 Sechium edule HOM05D004875 ORTHO05D005598 0.0e+00 1222.6 1013 61.6
TWI31G0826 Tripterygium wilfordii HOM05D004875 ORTHO05D005598 0.0e+00 1219.9 1014 62.1
TPR.G25698 Trifolium pratense HOM05D004875 ORTHO05D005598 0.0e+00 1215.7 1015 60.2
Glyma.11G163900 Glycine max HOM05D004875 ORTHO05D005598 0.0e+00 1213.7 1019 60.7
Sabra13G0122800 Salix brachista HOM05D004875 ORTHO05D005598 0.0e+00 1213.4 1076 58.9
TWI79G1304 Tripterygium wilfordii HOM05D004875 ORTHO05D005598 0.0e+00 1213.4 1014 61.4
Lj6g0003221 Lotus japonicus HOM05D004875 ORTHO05D005598 0.0e+00 1208.4 1014 60.7
Psat5g154480 Pisum sativum HOM05D004875 ORTHO05D005598 0.0e+00 1207.6 1015 60.6
VMungo0540G0701 Vigna mungo HOM05D004875 ORTHO05D005598 0.0e+00 1206.8 1014 60.4
THA.LOC104799387 Tarenaya hassleriana HOM05D004875 ORTHO05D005598 0.0e+00 1202.6 1011 60.9
Medtr3g465700 Medicago truncatula HOM05D004875 ORTHO05D005598 0.0e+00 1199.5 1015 59.7
Phvul.006G074100 Phaseolus vulgaris HOM05D004875 ORTHO05D005598 0.0e+00 1197.6 1015 60.1
ClCG02G019240 Citrullus lanatus HOM05D004875 ORTHO05D005598 0.0e+00 1193.7 1014 60.7
Glyma.18G057100 Glycine max HOM05D004875 ORTHO05D005598 0.0e+00 1190.6 1020 60.1
CARHR272270 Cardamine hirsuta HOM05D004875 ORTHO05D005598 0.0e+00 1188.7 1008 60.4
Eucgr.B04004 Eucalyptus grandis HOM05D004875 ORTHO05D005598 0.0e+00 1186.4 1016 60.6
PGR102G0105 Punica granatum HOM05D004875 ORTHO05D005598 0.0e+00 1186.4 1012 61.2
AL8G34640 Arabidopsis lyrata HOM05D004875 ORTHO05D005598 0.0e+00 1183.7 1008 60.2
AT5G58450 Arabidopsis thaliana HOM05D004875 ORTHO05D005598 0.0e+00 1174.8 1007 59.8
CsaV3_6G015880 Cucumis sativus L. HOM05D004875 ORTHO05D005598 0.0e+00 1170.6 1015 59.7
Sp6g20140 Schrenkiella parvula HOM05D004875 ORTHO05D005598 0.0e+00 1169.8 1007 59.9
MBI15_g31180_MAGBIO Magnolia biondii HOM05D004875 ORTHO05D005598 0.0e+00 1167.9 1017 60.1
BcaB08g36179 Brassica carinata HOM05D004875 ORTHO05D005598 0.0e+00 1165.2 1007 59.4
Carub.0008s1904 Capsella rubella HOM05D004875 ORTHO05D005598 0.0e+00 1164.4 1005 59.5
A10p15830 Brassica napus HOM05D004875 ORTHO05D005598 0.0e+00 1163.7 1006 59.2
BraA10t43642Z Brassica rapa HOM05D004875 ORTHO05D005598 0.0e+00 1161.0 1006 59.3
BcaC04g19867 Brassica carinata HOM05D004875 ORTHO05D005598 0.0e+00 1156.4 1006 58.9
BolC9t57888H Brassica oleracea HOM05D004875 ORTHO05D005598 0.0e+00 1156.4 1006 58.9
C09p50320 Brassica napus HOM05D004875 ORTHO05D005598 0.0e+00 1155.6 1006 58.8
AUR62001870 Chenopodium quinoa HOM05D004875 ORTHO05D005598 0.0e+00 1146.0 1013 58.3
Aa31LG11G230 Aethionema arabicum HOM05D004875 ORTHO05D005598 0.0e+00 1139.8 1016 58.0
AUR62009668 Chenopodium quinoa HOM05D004875 ORTHO05D005598 0.0e+00 1139.4 1013 58.1
EL10Ac7g15921 Beta vulgaris HOM05D004875 ORTHO05D005598 0.0e+00 1105.1 1012 56.0
Hund05024 Selenicereus undatus HOM05D004875 ORTHO05D005598 0.0e+00 1092.8 1008 56.4
Ah.08g215110 Amaranthus hybridus HOM05D004875 ORTHO05D005598 0.0e+00 1080.9 982 57.2
Gohir.D05G109200 Gossypium hirsutum HOM05D004875 ORTHO05D005598 0.0e+00 1078.5 777 70.3
Os05g0345400 Oryza sativa ssp. japonica HOM05D004875 ORTHO05D005598 5.9e-306 1054.3 1017 54.9
HPP92_003240 Vanilla planifolia HOM05D004875 ORTHO05D005598 2.6e-301 1038.9 1018 53.0
ATR0594G111 Amborella trichopoda HOM05D004875 ORTHO05D005598 2.9e-300 1035.4 1018 54.6
Nn2g11010 Nelumbo nucifera HOM05D004875 ORTHO05D005598 3.7e-300 1035.0 797 66.8
Gohir.A05G109100 Gossypium hirsutum HOM05D004875 ORTHO05D005598 2.0e-298 1029.2 777 68.5
Thhalv10012545m.g Eutrema salsugineum HOM05D004875 ORTHO05D005598 1.7e-273 946.4 694 68.3
Dinv09669 Davidia involucrata HOM05D004875 ORTHO05D005598 2.4e-262 909.4 594 76.1
CDE04G2228 Ceratophyllum demersum HOM05D004875 ORTHO05D005598 5.4e-259 898.3 980 49.7
Actinidia32610 Actinidia chinensis HOM05D004875 ORTHO05D005598 4.3e-256 888.6 611 72.3
Zm00001eb286340 Zea mays HOM05D004875 ORTHO05D005598 2.1e-234 816.6 872 49.9
PSO349G0337 Papaver somniferum HOM05D004875 ORTHO05D005598 5.1e-233 812.0 1023 45.8
Ca_15009_v3 Cicer arietinum L. HOM05D004875 ORTHO05D005598 1.5e-232 810.4 750 55.1
SEGI_14366 Sequoiadendron giganteum HOM05D004875 ORTHO05D005598 6.9e-230 801.6 995 46.1
PSO765G0012 Papaver somniferum HOM05D004875 ORTHO05D005598 1.3e-228 797.3 1024 45.0
Sc12g0001970 Simmondsia chinensis HOM05D004875 ORTHO05D005598 5.7e-224 781.9 775 51.4
CDE07G1129 Ceratophyllum demersum HOM05D004875 ORTHO05D005598 6.7e-217 758.4 1015 44.3
Solyc09g057910.3 Solanum lycopersicum HOM05D004875 ORTHO05D005598 4.4e-200 702.6 507 70.4
Peaxi162Scf00055g01011 Petunia axillaris HOM05D004875 ORTHO05D005598 1.9e-195 687.2 506 69.4
Peaxi162Scf00055g00107 Petunia axillaris HOM05D004875 ORTHO05D005598 1.6e-181 641.0 510 63.7
Cpa.g.sc2.356 Carica papaya HOM05D004875 ORTHO05D005598 8.9e-177 625.2 556 57.6
Atru.chr3.4118 Acer truncatum HOM05D004875 ORTHO05D005598 1.4e-174 617.8 454 69.4
Mapoly0170s0019 Marchantia polymorpha HOM05D004875 ORTHO05D005598 1.2e-173 614.8 1029 37.6
Oeu027574.2 Olea europaea HOM05D004875 ORTHO05D005598 7.8e-173 612.1 463 67.0
AagrBONN_evm.TU.Sc2ySwM_228.3164 Anthoceros agrestis HOM05D004875 ORTHO05D005598 2.3e-172 610.5 1046 36.6
Cpa.g.sc2.355 Carica papaya HOM05D004875 ORTHO05D005598 2.5e-171 607.1 435 70.8
Nitab4.5_0000002g0030 Nicotiana tabacum HOM05D004875 ORTHO05D005598 1.2e-170 604.7 528 61.6
Solyc09g057920.3 Solanum lycopersicum HOM05D004875 ORTHO05D005598 1.1e-166 591.7 512 60.0
Nitab4.5_0005130g0040 Nicotiana tabacum HOM05D004875 ORTHO05D005598 7.1e-166 589.0 573 57.2
Atru.chr3.4119 Acer truncatum HOM05D004875 ORTHO05D005598 1.8e-153 547.7 421 66.0
Pp3c18_5510 Physcomitrium patens HOM05D004875 ORTHO05D005598 1.8e-153 547.7 1020 33.7
unitig_0.g437 Utricularia gibba HOM05D004875 ORTHO05D005598 8.1e-138 495.7 528 51.3
SHI19214 Sapria himalayana HOM05D004875 ORTHO05D005598 1.9e-131 474.6 624 43.6
CBR_g50477 Chara braunii HOM05D004875 ORTHO05D005598 5.1e-116 423.3 1048 29.3
Oeu019275.2 Olea europaea HOM05D004875 ORTHO05D005598 9.7e-115 419.1 303 74.6
MELO3C025695.2 Cucumis melo HOM05D004875 ORTHO05D005598 4.8e-106 390.2 238 79.8
MELO3C025696.2 Cucumis melo HOM05D004875 ORTHO05D005598 1.7e-103 381.7 423 49.2
Sc12g0001960 Simmondsia chinensis HOM05D004875 ORTHO05D005598 2.8e-98 364.4 238 77.3
unitig_0.g436 Utricularia gibba HOM05D004875 ORTHO05D005598 1.0e-92 345.9 452 46.5
CAN.G3.43 Capsicum annuum HOM05D004875 ORTHO05D005598 1.3e-90 339.0 332 52.4
Nitab4.5_0005130g0030 Nicotiana tabacum HOM05D004875 ORTHO05D005598 1.1e-89 335.9 316 54.7
Nitab4.5_0000002g0020 Nicotiana tabacum HOM05D004875 ORTHO05D005598 1.6e-88 332.0 313 55.0
MELO3C027117.2 Cucumis melo HOM05D004875 ORTHO05D005598 2.2e-87 328.2 296 57.1
PSO541G6542 Papaver somniferum HOM05D004875 ORTHO05D005598 4.9e-58 230.7 390 40.8
PSO532G0016 Papaver somniferum HOM05D004875 ORTHO05D005598 3.9e-55 221.1 418 35.6
PSO541G1704 Papaver somniferum HOM05D004875 ORTHO05D005598 5.1e-55 220.7 418 35.6
C04p28250 Brassica napus HOM05D004875 ORTHO05D005598 1.5e-46 192.6 163 62.0
BolC4t24370H Brassica oleracea HOM05D004875 ORTHO05D005598 1.5e-46 192.6 163 62.0
CAN.G3.44 Capsicum annuum HOM05D004875 ORTHO05D005598 6.2e-45 187.2 110 85.5
PSO478G4214 Papaver somniferum HOM05D004875 ORTHO05D005598 1.6e-40 172.6 246 43.9
PRCOL_00002473 Prasinoderma coloniale HOM05D004875 ORTHO05D005598 2.3e-39 168.7 713 25.9
Cre11.g475050 Chlamydomonas reinhardtii HOM05D004875 ORTHO05D005598 1.5e-38 166.0 823 25.2
PSO339G3761 Papaver somniferum HOM05D004875 ORTHO05D005598 4.2e-33 147.9 417 30.9
PSO170G5144 Papaver somniferum HOM05D004875 ORTHO05D005598 3.5e-32 144.8 413 30.0
Lsat_1_v5_gn_9_14740 Lactuca sativa HOM05D000378 ORTHO05D005598 1.0e-31 143.3 147 54.4
BcaC02g10491 Brassica carinata HOM05D004875 ORTHO05D005598 1.1e-30 139.8 116 62.9
PSO384G1619 Papaver somniferum HOM05D004875 ORTHO05D005598 1.1e-30 139.8 311 32.2
SHI19217 Sapria himalayana HOM05D004875 ORTHO05D005598 4.3e-30 137.9 162 50.6
BcaC07g37054 Brassica carinata HOM05D004875 ORTHO05D005598 2.4e-28 132.1 121 62.0
PSO541G5558 Papaver somniferum HOM05D004875 ORTHO05D005598 9.0e-28 130.2 279 34.4
MCO11G770 Micromonas commoda HOM05D004875 ORTHO05D005598 2.6e-27 128.6 683 22.3
C01p15940 Brassica napus HOM05D004875 ORTHO05D005598 3.2e-25 121.7 76 78.9
SHI19216 Sapria himalayana HOM05D004875 ORTHO05D005598 1.9e-22 112.5 82 65.9
PSO170G5101 Papaver somniferum HOM05D004875 ORTHO05D005598 1.4e-20 106.3 435 24.8
SMO117G0137 Selaginella moellendorffii HOM05D004875 ORTHO05D005598 4.9e-18 97.8 90 52.2
SHI19215 Sapria himalayana HOM05D004875 ORTHO05D005598 6.5e-18 97.4 207 34.8
BolC8t47222H Brassica oleracea HOM05D004875 ORTHO05D005598 1.6e-16 92.8 54 83.3
BcaB03g16392 Brassica carinata HOM05D004875 ORTHO05D005598 2.7e-16 92.0 161 33.5
SHI19218 Sapria himalayana HOM05D004875 ORTHO05D005598 7.4e-14 84.0 51 72.5
PGSC0003DMG400004010 Solanum tuberosum HOM05D004875 ORTHO05D005598 1.1e-12 80.1 69 60.9
Oeu042861.1 Olea europaea HOM05D004875 ORTHO05D005598 2.4e-12 79.0 46 80.4
SEGI_36322 Sequoiadendron giganteum HOM05D004875 ORTHO05D005598 1.5e-11 76.3 49 67.3
PSO170G3032 Papaver somniferum HOM05D004875 ORTHO05D005598 2.0e-11 75.9 107 47.7
BcaB06g26910 Brassica carinata HOM05D000375 ORTHO05D000240 1.7e-10 72.8 88 42.0
Sabra19G0131700 Salix brachista HOM05D000080 ORTHO05D004954 2.3e-07 62.4 104 41.3


User provided reference genes

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