Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold145G36067 Striga asiatica HOM05D004930 ORTHO05D006531 5.4e-207 724.2 386 100.0
SalBow6G0918 Salvia bowleyana HOM05D004930 ORTHO05D006531 5.0e-160 568.2 383 75.5
SalBow6G1869 Salvia bowleyana HOM05D004930 ORTHO05D006531 5.0e-160 568.2 383 75.5
CSS0021494 Camellia sinensis var. sinensis HOM05D004930 ORTHO05D006531 2.0e-148 529.6 332 79.8
TAR628G0980 Trochodendron aralioides HOM05D004930 ORTHO05D006531 4.1e-146 521.9 362 73.5
Ca_00086_v3 Cicer arietinum L. HOM05D004930 ORTHO05D006531 5.9e-145 518.1 333 76.9
Solyc01g104310.3 Solanum lycopersicum HOM05D004930 ORTHO05D006531 2.9e-144 515.8 407 66.6
PGSC0003DMG400023754 Solanum tuberosum HOM05D004930 ORTHO05D006531 2.9e-144 515.8 407 66.8
Sopen01g046750 Solanum pennellii HOM05D004930 ORTHO05D006531 5.0e-144 515.0 407 66.6
CiPaw.06G148500 Carya illinoinensis HOM05D004930 ORTHO05D006531 1.1e-143 513.8 350 74.9
FvH4_5g29680 Fragaria vesca HOM05D004930 ORTHO05D006531 1.9e-143 513.1 335 75.8
Lj6g0009653 Lotus japonicus HOM05D004930 ORTHO05D006531 3.2e-143 512.3 333 76.6
Nn1g08650 Nelumbo nucifera HOM05D004930 ORTHO05D006531 3.2e-143 512.3 359 71.3
TAR376G0678 Trochodendron aralioides HOM05D004930 ORTHO05D006531 5.5e-143 511.5 332 76.2
FAN13G1313 Fragaria x ananassa HOM05D004930 ORTHO05D006531 7.2e-143 511.1 335 75.5
Gohir.D01G000700 Gossypium hirsutum HOM05D004930 ORTHO05D006531 9.4e-143 510.8 351 73.8
Gorai.002G001200 Gossypium raimondii HOM05D004930 ORTHO05D006531 9.4e-143 510.8 336 75.6
RcHm_v2.0_Chr7g0223001 Rosa chinensis HOM05D004930 ORTHO05D006531 2.1e-142 509.6 335 75.8
Thecc.02G040000 Theobroma cacao HOM05D004930 ORTHO05D006531 3.6e-142 508.8 336 75.6
Gohir.A01G001000 Gossypium hirsutum HOM05D004930 ORTHO05D006531 6.1e-142 508.1 388 68.6
Duzib248G0906 Durio zibethinus HOM05D004930 ORTHO05D006531 1.0e-141 507.3 339 74.0
Potri.001G209500 Populus trichocarpa HOM05D004930 ORTHO05D006531 4.0e-141 505.4 376 68.6
arahy.Tifrunner.gnm1.ann1.PLNC5S Arachis hypogaea HOM05D004930 ORTHO05D006531 8.8e-141 504.2 335 76.1
DCAR_001819 Daucus carota HOM05D004930 ORTHO05D006531 8.8e-141 504.2 380 68.2
Rhsim05G0119100 Rhododendron simsii HOM05D004930 ORTHO05D006531 8.8e-141 504.2 339 76.4
CANSAT11G0917 Cannabis sativa HOM05D004930 ORTHO05D006531 1.2e-140 503.8 331 74.9
FAN04G2298 Fragaria x ananassa HOM05D004930 ORTHO05D006531 1.2e-140 503.8 347 73.2
Glyma.15G047800 Glycine max HOM05D004930 ORTHO05D006531 1.5e-140 503.4 373 70.0
FAN18G2930 Fragaria x ananassa HOM05D004930 ORTHO05D006531 2.0e-140 503.1 349 73.4
MD15G1421100 Malus domestica HOM05D004930 ORTHO05D006531 2.0e-140 503.1 337 73.9
TPR.G2103 Trifolium pratense HOM05D004930 ORTHO05D006531 2.0e-140 503.1 333 74.8
VMungo0540G0757 Vigna mungo HOM05D004930 ORTHO05D006531 2.0e-140 503.1 375 69.6
Duzib052G0674 Durio zibethinus HOM05D004930 ORTHO05D006531 2.6e-140 502.7 338 74.0
COL.COLO4_17882 Corchorus olitorius HOM05D004930 ORTHO05D006531 4.4e-140 501.9 333 74.8
Cfa005536 Carpinus fangiana HOM05D004930 ORTHO05D006531 5.7e-140 501.5 336 75.3
TWI59G0754 Tripterygium wilfordii HOM05D004930 ORTHO05D006531 5.7e-140 501.5 366 70.5
arahy.Tifrunner.gnm1.ann1.3M9FW6 Arachis hypogaea HOM05D004930 ORTHO05D006531 7.5e-140 501.1 335 74.9
Atru.chr6.830 Acer truncatum HOM05D004930 ORTHO05D006531 1.3e-139 500.4 336 74.1
Phvul.006G213000 Phaseolus vulgaris HOM05D004930 ORTHO05D006531 1.3e-139 500.4 337 74.8
Cpa.g.sc2.5 Carica papaya HOM05D004930 ORTHO05D006531 2.2e-139 499.6 335 74.3
Nitab4.5_0011195g0040 Nicotiana tabacum HOM05D004930 ORTHO05D006531 4.8e-139 498.4 349 73.1
Lalb_Chr18g0060861 Lupinus albus HOM05D004930 ORTHO05D006531 6.3e-139 498.0 376 66.8
Psat1g224280 Pisum sativum HOM05D004930 ORTHO05D006531 8.2e-139 497.7 377 68.7
Potri.003G020800 Populus trichocarpa HOM05D004930 ORTHO05D006531 1.1e-138 497.3 335 74.3
HanXRQChr11g0333531 Helianthus annuus HOM05D004930 ORTHO05D006531 1.8e-138 496.5 339 74.0
Lsat_1_v5_gn_7_77761 Lactuca sativa HOM05D004930 ORTHO05D006531 3.1e-138 495.7 392 67.9
Cc02_g22360 Coffea canephora HOM05D004930 ORTHO05D006531 5.3e-138 495.0 396 68.4
Ciclev10001315m.g Citrus clementina HOM05D004930 ORTHO05D006531 9.1e-138 494.2 333 73.9
MELO3C019485.2 Cucumis melo HOM05D004930 ORTHO05D006531 1.2e-137 493.8 332 73.8
Medtr2g007650 Medicago truncatula HOM05D004930 ORTHO05D006531 1.2e-137 493.8 349 73.6
CsaV3_3G018910 Cucumis sativus L. HOM05D004930 ORTHO05D006531 2.0e-137 493.0 332 73.5
Eucgr.G00613 Eucalyptus grandis HOM05D004930 ORTHO05D006531 2.7e-137 492.7 336 72.9
Glyma.08G184900 Glycine max HOM05D004930 ORTHO05D006531 5.0e-136 488.4 374 68.7
ClCG05G009760 Citrullus lanatus HOM05D004930 ORTHO05D006531 6.5e-136 488.0 332 72.6
PGR042G0956 Punica granatum HOM05D004930 ORTHO05D006531 1.1e-135 487.3 394 65.0
CAN.G1577.7 Capsicum annuum HOM05D004930 ORTHO05D006531 1.5e-135 486.9 296 80.4
GSVIVG01022999001 Vitis vinifera HOM05D004930 ORTHO05D006531 1.6e-134 483.4 333 73.9
ECA236G4599 Erigeron canadensis HOM05D004930 ORTHO05D006531 1.8e-133 479.9 347 72.6
Aqoxy5G02422 Aquilegia oxysepala HOM05D004930 ORTHO05D006531 4.4e-132 475.3 359 68.0
EL10Ac6g15372 Beta vulgaris HOM05D004930 ORTHO05D006531 7.5e-132 474.6 326 74.2
CDE05G0822 Ceratophyllum demersum HOM05D004930 ORTHO05D006531 7.5e-132 474.6 336 68.8
Actinidia39050 Actinidia chinensis HOM05D004930 ORTHO05D006531 5.4e-130 468.4 335 71.3
THA.LOC104810264 Tarenaya hassleriana HOM05D004930 ORTHO05D006531 1.3e-128 463.8 381 61.2
QL02p098488 Quercus lobata HOM05D004930 ORTHO05D006531 1.5e-127 460.3 450 56.9
Gohir.D08G010200 Gossypium hirsutum HOM05D004930 ORTHO05D006531 4.2e-127 458.8 357 63.3
Gohir.A08G000149 Gossypium hirsutum HOM05D004930 ORTHO05D006531 7.2e-127 458.0 354 63.6
Gorai.004G003500 Gossypium raimondii HOM05D004930 ORTHO05D006531 7.2e-127 458.0 354 63.6
Hund04330 Selenicereus undatus HOM05D004930 ORTHO05D006531 7.2e-127 458.0 326 69.9
A08p08610 Brassica napus HOM05D004930 ORTHO05D006531 2.1e-126 456.4 333 67.3
BraA08t32874Z Brassica rapa HOM05D004930 ORTHO05D006531 2.1e-126 456.4 333 67.3
Lalb_Chr20g0123411 Lupinus albus HOM05D004930 ORTHO05D006531 6.1e-126 454.9 376 64.4
Carub.0001s3147 Capsella rubella HOM05D004930 ORTHO05D006531 1.8e-125 453.4 333 66.7
CARHR032640 Cardamine hirsuta HOM05D004930 ORTHO05D006531 1.8e-125 453.4 352 64.2
Lj5A251T70 Lonicera japonica HOM05D004930 ORTHO05D006531 2.3e-125 453.0 364 69.8
Sp1g28730 Schrenkiella parvula HOM05D004930 ORTHO05D006531 3.0e-125 452.6 384 60.4
ATR0684G093 Amborella trichopoda HOM05D004930 ORTHO05D006531 4.0e-125 452.2 355 65.9
AL1G47670 Arabidopsis lyrata HOM05D004930 ORTHO05D006531 5.2e-125 451.8 333 66.4
AT1G33270 Arabidopsis thaliana HOM05D004930 ORTHO05D006531 8.9e-125 451.1 333 66.7
BcaC07g37556 Brassica carinata HOM05D004930 ORTHO05D006531 2.0e-124 449.9 384 59.6
BcaB04g17919 Brassica carinata HOM05D004930 ORTHO05D006531 3.4e-124 449.1 333 64.3
Peaxi162Scf00011g00243 Petunia axillaris HOM05D004930 ORTHO05D006531 5.7e-124 448.4 333 69.1
Zm00001eb113740 Zea mays HOM05D004930 ORTHO05D006531 5.7e-124 448.4 336 66.7
Aa31LG6G7800 Aethionema arabicum HOM05D004930 ORTHO05D006531 4.9e-123 445.3 381 59.6
Os11g0546300 Oryza sativa ssp. japonica HOM05D004930 ORTHO05D006531 6.3e-123 444.9 335 64.8
PSO170G4712 Papaver somniferum HOM05D004930 ORTHO05D006531 6.3e-123 444.9 338 66.3
Sabra03G0012100 Salix brachista HOM05D004930 ORTHO05D006531 8.3e-123 444.5 463 53.8
Sc07g0007240 Simmondsia chinensis HOM05D004930 ORTHO05D006531 5.4e-122 441.8 336 67.9
SEGI_13232 Sequoiadendron giganteum HOM05D004930 ORTHO05D006531 1.6e-121 440.3 335 66.3
MBI03_g28294_MAGBIO Magnolia biondii HOM05D004930 ORTHO05D006531 1.3e-120 437.2 281 76.2
BcaC08g43878 Brassica carinata HOM05D004930 ORTHO05D006531 3.8e-120 435.6 334 64.7
BolC6t36417H Brassica oleracea HOM05D004930 ORTHO05D006531 3.8e-120 435.6 334 64.7
C06p12670 Brassica napus HOM05D004930 ORTHO05D006531 8.6e-120 434.5 334 64.1
BcaB07g32965 Brassica carinata HOM05D004930 ORTHO05D006531 1.5e-119 433.7 334 64.1
A09p32980 Brassica napus HOM05D004930 ORTHO05D006531 2.5e-119 433.0 333 64.6
BraA09t38838Z Brassica rapa HOM05D004930 ORTHO05D006531 2.5e-119 433.0 333 64.6
Nitab4.5_0002245g0180 Nicotiana tabacum HOM05D004930 ORTHO05D006531 3.6e-118 429.1 333 68.5
Ah.03g147430 Amaranthus hybridus HOM05D004930 ORTHO05D006531 3.0e-117 426.0 361 61.5
Sabra01G0161800 Salix brachista HOM05D004930 ORTHO05D006531 1.3e-112 410.6 397 58.7
vmacro01769 Vaccinium macrocarpon HOM05D004930 ORTHO05D006531 5.2e-109 398.7 355 60.3
AUR62017811 Chenopodium quinoa HOM05D004930 ORTHO05D006531 9.8e-108 394.4 293 68.6
BolC8t47898H Brassica oleracea HOM05D004930 ORTHO05D006531 1.3e-107 394.0 431 50.3
SMO145G0200 Selaginella moellendorffii HOM05D004930 ORTHO05D006531 1.3e-107 394.0 272 68.8
Oeu012747.1 Olea europaea HOM05D004930 ORTHO05D006531 1.7e-107 393.7 215 88.4
Thhalv10007991m.g Eutrema salsugineum HOM05D004930 ORTHO05D006531 2.2e-107 393.3 322 62.7
Ca_29925_v3 Cicer arietinum L. HOM05D004930 ORTHO05D006531 1.9e-106 390.2 214 86.9
Dinv19356 Davidia involucrata HOM05D004930 ORTHO05D006531 3.5e-105 386.0 290 71.0
Rhsim11G0130300 Rhododendron simsii HOM05D004930 ORTHO05D006531 1.6e-102 377.1 214 83.2
THA.LOC104813074 Tarenaya hassleriana HOM05D004930 ORTHO05D006531 2.8e-102 376.3 289 65.4
AagrBONN_evm.TU.Sc2ySwM_344.3941 Anthoceros agrestis HOM05D004930 ORTHO05D006531 4.0e-101 372.5 267 67.0
Mapoly0101s0012 Marchantia polymorpha HOM05D004930 ORTHO05D006531 5.1e-96 355.5 261 66.3
Pp3c11_20720 Physcomitrium patens HOM05D004930 ORTHO05D006531 2.8e-94 349.7 268 65.3
vmacro19901 Vaccinium macrocarpon HOM05D004930 ORTHO05D006531 3.6e-94 349.4 547 41.3
HPP92_002187 Vanilla planifolia HOM05D004930 ORTHO05D006531 6.8e-93 345.1 301 61.8
HanXRQChr02g0058791 Helianthus annuus HOM05D004930 ORTHO05D006531 3.5e-89 332.8 199 77.9
Manes.07G014400 Manihot esculenta HOM05D004930 ORTHO05D006531 2.4e-85 320.1 229 72.5
CSS0024235 Camellia sinensis var. sinensis HOM05D004930 ORTHO05D006531 2.0e-84 317.0 332 56.6
Prupe.1G566300 Prunus persica HOM05D004930 ORTHO05D006531 2.6e-84 316.6 226 73.0
Sed0026856 Sechium edule HOM05D004930 ORTHO05D006531 9.9e-84 314.7 226 73.0
SMO139G0053 Selaginella moellendorffii HOM05D004930 ORTHO05D006531 1.4e-82 310.8 215 68.8
AUR62003501 Chenopodium quinoa HOM05D004930 ORTHO05D006531 2.1e-81 307.0 214 71.0
AagrBONN_evm.TU.Sc2ySwM_344.3947 Anthoceros agrestis HOM05D000001 ORTHO05D000003 1.3e-80 304.3 265 57.0
CBR_g22336 Chara braunii HOM05D004930 ORTHO05D006531 3.5e-73 279.6 222 62.6
Haze_01635 Corylus avellana HOM05D004930 ORTHO05D006531 1.3e-64 251.1 192 70.8
Cre03.g195500 Chlamydomonas reinhardtii HOM05D004930 ORTHO05D006531 2.5e-42 177.2 260 36.9
Cre12.g530950 Chlamydomonas reinhardtii HOM05D004930 ORTHO05D006531 3.2e-42 176.8 241 41.5
MCO11G494 Micromonas commoda HOM05D004930 ORTHO05D006531 2.7e-33 147.1 287 35.9
Migut.N01037 Erythranthe guttata HOM05D004930 ORTHO05D006531 1.3e-30 138.3 172 58.1
PRCOL_00005484 Prasinoderma coloniale HOM05D007321 ORTHO05D009244 1.9e-26 124.4 247 36.4
AUR62003500 Chenopodium quinoa HOM05D004930 ORTHO05D006531 3.6e-25 120.2 123 56.9
CARHR054090 Cardamine hirsuta HOM05D004930 ORTHO05D006531 1.7e-22 111.3 88 65.9
FAN06G5097 Fragaria x ananassa HOM05D004930 ORTHO05D006531 2.0e-20 104.4 64 76.6
FAN25G1134 Fragaria x ananassa HOM05D004930 ORTHO05D006531 2.0e-20 104.4 64 76.6
FAN11G3733 Fragaria x ananassa HOM05D004930 ORTHO05D006531 2.7e-20 104.0 64 75.0
FvH4_3g12743 Fragaria vesca HOM05D004930 ORTHO05D006531 4.5e-20 103.2 64 76.6
FvH4_3g29702 Fragaria vesca HOM05D004930 ORTHO05D011275 2.2e-19 100.9 64 73.4
FAN01G0209 Fragaria x ananassa HOM05D004930 ORTHO05D006531 8.5e-19 99.0 64 70.3
FAN12G1704 Fragaria x ananassa HOM05D004930 ORTHO05D006531 8.5e-19 99.0 64 70.3
FAN17G1951 Fragaria x ananassa HOM05D004930 ORTHO05D006531 8.5e-19 99.0 64 70.3
FAN17G0369 Fragaria x ananassa HOM05D004930 ORTHO05D011275 2.5e-18 97.4 64 68.8
FAN17G1425 Fragaria x ananassa HOM05D004930 ORTHO05D006531 3.2e-18 97.1 64 68.8
FvH4_4g16550 Fragaria vesca HOM05D004930 ORTHO05D011275 5.5e-18 96.3 64 67.2
MCO01G237 Micromonas commoda HOM05D004930 ORTHO05D006531 6.8e-16 89.4 257 29.6
MCO09G146 Micromonas commoda HOM05D004930 ORTHO05D270306 1.3e-14 85.1 235 28.5
Cre09.g400219 Chlamydomonas reinhardtii HOM05D004930 ORTHO05D006531 2.2e-14 84.3 166 33.7
Ca_20167_v3 Cicer arietinum L. HOM05D004930 ORTHO05D000002 4.8e-14 83.2 49 85.7
PRCOL_00003693 Prasinoderma coloniale HOM05D004930 ORTHO05D006531 4.1e-13 80.1 156 36.5
CBR_g45217 Chara braunii HOM05D004930 ORTHO05D028745 1.5e-10 71.6 170 29.4
Cre26.g756847 Chlamydomonas reinhardtii HOM05D004930 ORTHO05D028745 2.1e-09 67.8 185 33.0


User provided reference genes

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