Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold145G36061 Striga asiatica HOM05D004322 ORTHO05D005033 2.2e-160 568.9 291 100.0
SalBow6G0151 Salvia bowleyana HOM05D004322 ORTHO05D005033 2.7e-86 322.8 242 66.1
SalBow6G5232 Salvia bowleyana HOM05D004322 ORTHO05D005033 3.6e-86 322.4 242 66.5
MSTRG.16544 Avicennia marina HOM05D004322 ORTHO05D005033 1.1e-82 310.8 236 65.7
Migut.N01026 Erythranthe guttata HOM05D004322 ORTHO05D005033 1.1e-82 310.8 236 65.7
Peaxi162Scf01807g00011 Petunia axillaris HOM05D004322 ORTHO05D005033 4.1e-82 308.9 241 63.5
MSTRG.5246 Avicennia marina HOM05D004322 ORTHO05D005033 5.3e-82 308.5 239 63.2
Glyma.08G183900 Glycine max HOM05D004322 ORTHO05D005033 4.2e-79 298.9 236 61.4
Thecc.03G241900 Theobroma cacao HOM05D004322 ORTHO05D005033 9.4e-79 297.7 236 62.7
Gohir.D03G167900 Gossypium hirsutum HOM05D004322 ORTHO05D005033 2.1e-78 296.6 236 61.4
Gorai.003G177600 Gossypium raimondii HOM05D004322 ORTHO05D005033 2.1e-78 296.6 236 61.4
Gohir.A03G004600 Gossypium hirsutum HOM05D004322 ORTHO05D005033 3.6e-78 295.8 236 61.0
COL.COLO4_07504 Corchorus olitorius HOM05D004322 ORTHO05D005033 4.7e-78 295.4 236 61.4
Sopen01g047110 Solanum pennellii HOM05D004322 ORTHO05D005033 8.0e-78 294.7 241 61.4
Manes.10G133500 Manihot esculenta HOM05D004322 ORTHO05D005033 1.0e-77 294.3 236 61.4
Actinidia39064 Actinidia chinensis HOM05D004322 ORTHO05D005033 1.8e-77 293.5 236 60.2
arahy.Tifrunner.gnm1.ann1.1NY3A5 Arachis hypogaea HOM05D004322 ORTHO05D005033 1.8e-77 293.5 236 60.2
Glyma.15G048900 Glycine max HOM05D004322 ORTHO05D005033 1.8e-77 293.5 236 59.7
arahy.Tifrunner.gnm1.ann1.H25YH4 Arachis hypogaea HOM05D004322 ORTHO05D005033 5.2e-77 292.0 236 60.2
vmacro01793 Vaccinium macrocarpon HOM05D004322 ORTHO05D005033 2.6e-76 289.7 236 61.4
TAR376G0532 Trochodendron aralioides HOM05D004322 ORTHO05D005033 4.4e-76 288.9 236 59.3
VMungo0251G0859 Vigna mungo HOM05D004322 ORTHO05D005033 4.4e-76 288.9 236 59.7
CiPaw.05G042000 Carya illinoinensis HOM05D004322 ORTHO05D005033 7.5e-76 288.1 236 60.2
Duzib205G0368 Durio zibethinus HOM05D004322 ORTHO05D005033 1.7e-75 287.0 236 59.3
ECA240G2745 Erigeron canadensis HOM05D004322 ORTHO05D005033 1.7e-75 287.0 236 58.9
Atru.chr6.1013_Atru.chr6.1014 Acer truncatum HOM05D004322 ORTHO05D005033 2.8e-75 286.2 236 59.3
PGSC0003DMG400029776 Solanum tuberosum HOM05D004322 ORTHO05D005033 2.8e-75 286.2 236 60.2
Phvul.006G211500 Phaseolus vulgaris HOM05D004322 ORTHO05D005033 4.8e-75 285.4 236 58.5
Solyc01g104600.4 Solanum lycopersicum HOM05D004322 ORTHO05D005033 4.8e-75 285.4 236 60.6
GSVIVG01029694001 Vitis vinifera HOM05D004322 ORTHO05D005033 6.3e-75 285.0 236 58.1
CANSAT11G1833 Cannabis sativa HOM05D004322 ORTHO05D005033 1.1e-74 284.3 236 59.7
Nn5g28787 Nelumbo nucifera HOM05D004322 ORTHO05D005033 2.4e-74 283.1 236 57.6
unitig_62.g23621 Utricularia gibba HOM05D004322 ORTHO05D005033 2.4e-74 283.1 238 61.3
TWI23G0630 Tripterygium wilfordii HOM05D004322 ORTHO05D005033 3.1e-74 282.7 236 60.2
TWI23G1123 Tripterygium wilfordii HOM05D004322 ORTHO05D005033 3.1e-74 282.7 236 60.2
Hma1.2p1_0557F.1_g178250 Hydrangea macrophylla HOM05D004322 ORTHO05D005033 4.1e-74 282.3 237 58.6
Hund13069 Selenicereus undatus HOM05D004322 ORTHO05D005033 4.1e-74 282.3 254 55.5
TWI14G0809 Tripterygium wilfordii HOM05D004322 ORTHO05D005033 4.1e-74 282.3 236 60.2
Aqoxy5G02055 Aquilegia oxysepala HOM05D004322 ORTHO05D005033 5.4e-74 282.0 236 57.2
Duzib084G1309 Durio zibethinus HOM05D004322 ORTHO05D005033 1.2e-73 280.8 236 59.3
Lj6g0010196 Lotus japonicus HOM05D004322 ORTHO05D005033 1.2e-73 280.8 236 58.1
Dinv24253 Davidia involucrata HOM05D004322 ORTHO05D005033 1.6e-73 280.4 236 58.1
FAN08G1384 Fragaria x ananassa HOM05D004322 ORTHO05D005033 2.7e-73 279.6 236 58.5
HanXRQChr03g0066481 Helianthus annuus HOM05D004322 ORTHO05D005033 2.7e-73 279.6 236 55.9
RcHm_v2.0_Chr7g0223291 Rosa chinensis HOM05D004322 ORTHO05D005033 2.7e-73 279.6 236 58.9
BolC4t25750H Brassica oleracea HOM05D004322 ORTHO05D005033 1.0e-72 277.7 236 56.4
PSO063G0058 Papaver somniferum HOM05D004322 ORTHO05D005033 1.3e-72 277.3 236 58.9
PGR042G3064 Punica granatum HOM05D004322 ORTHO05D005033 1.3e-72 277.3 236 56.4
Ah.11g045370 Amaranthus hybridus HOM05D004322 ORTHO05D005033 1.7e-72 276.9 236 56.4
EL10Ac2g03233 Beta vulgaris HOM05D004322 ORTHO05D005033 1.7e-72 276.9 239 55.6
AUR62018226 Chenopodium quinoa HOM05D004322 ORTHO05D005033 1.7e-72 276.9 236 57.6
MD15G1419900 Malus domestica HOM05D004322 ORTHO05D005033 2.3e-72 276.6 236 59.3
Aqoxy5G01565 Aquilegia oxysepala HOM05D004322 ORTHO05D005033 3.8e-72 275.8 236 56.4
BraA04t16492Z Brassica rapa HOM05D004322 ORTHO05D005033 3.8e-72 275.8 236 56.8
PSO782G1933 Papaver somniferum HOM05D004322 ORTHO05D005033 3.8e-72 275.8 236 58.5
FAN18G2629 Fragaria x ananassa HOM05D004322 ORTHO05D005033 5.0e-72 275.4 236 58.1
Ca_00095_v3 Cicer arietinum L. HOM05D004322 ORTHO05D005033 6.6e-72 275.0 236 56.4
Ca_29934_v3 Cicer arietinum L. HOM05D004322 ORTHO05D005033 6.6e-72 275.0 236 56.4
BcaC02g09358 Brassica carinata HOM05D004322 ORTHO05D005033 5.5e-71 271.9 236 55.5
C04p41720 Brassica napus HOM05D004322 ORTHO05D005033 5.5e-71 271.9 236 55.5
BcaB02g08633 Brassica carinata HOM05D004322 ORTHO05D005033 9.5e-71 271.2 236 55.1
Prupe.1G564800 Prunus persica HOM05D004322 ORTHO05D005033 9.5e-71 271.2 236 56.8
Medtr2g007840 Medicago truncatula HOM05D004322 ORTHO05D005033 1.2e-70 270.8 236 54.7
Thhalv10025920m.g Eutrema salsugineum HOM05D004322 ORTHO05D005033 1.6e-70 270.4 236 55.9
Nitab4.5_0000249g0270 Nicotiana tabacum HOM05D004322 ORTHO05D005033 1.6e-70 270.4 212 63.2
AUR62037741 Chenopodium quinoa HOM05D004322 ORTHO05D005033 2.8e-70 269.6 236 56.4
Potri.001G207900 Populus trichocarpa HOM05D004322 ORTHO05D005033 3.6e-70 269.2 238 58.0
ATR0584G136 Amborella trichopoda HOM05D004322 ORTHO05D005033 6.1e-70 268.5 236 55.5
AL7G42300 Arabidopsis lyrata HOM05D004322 ORTHO05D005033 6.1e-70 268.5 236 56.4
Sp7g11930 Schrenkiella parvula HOM05D004322 ORTHO05D005033 6.1e-70 268.5 236 54.7
A04p08040 Brassica napus HOM05D004322 ORTHO05D005033 8.0e-70 268.1 236 55.1
Eucgr.I02706 Eucalyptus grandis HOM05D004322 ORTHO05D005033 8.0e-70 268.1 236 57.6
FvH4_5g29770 Fragaria vesca HOM05D004322 ORTHO05D005033 1.0e-69 267.7 236 55.9
AT4G14110 Arabidopsis thaliana HOM05D004322 ORTHO05D005033 1.4e-69 267.3 236 55.9
BcaC07g37720 Brassica carinata HOM05D004322 ORTHO05D005033 1.8e-69 266.9 236 54.2
ClCG09G014140 Citrullus lanatus HOM05D004322 ORTHO05D005033 1.8e-69 266.9 236 55.9
BolC8t48099H Brassica oleracea HOM05D004322 ORTHO05D005033 2.3e-69 266.5 236 54.2
BcaB04g18113 Brassica carinata HOM05D004322 ORTHO05D005033 4.0e-69 265.8 236 54.2
MD08G1227500 Malus domestica HOM05D004322 ORTHO05D005033 5.2e-69 265.4 236 56.4
BraA08t33032Z Brassica rapa HOM05D004322 ORTHO05D005033 8.9e-69 264.6 236 53.8
Sed0005743 Sechium edule HOM05D004322 ORTHO05D005033 8.9e-69 264.6 236 55.1
TPR.G19733 Trifolium pratense HOM05D004322 ORTHO05D005033 8.9e-69 264.6 236 53.8
Carub.0007s2831 Capsella rubella HOM05D004322 ORTHO05D005033 1.2e-68 264.2 236 55.1
Ciclev10002548m.g Citrus clementina HOM05D004322 ORTHO05D005033 3.4e-68 262.7 237 55.7
FAN04G2215 Fragaria x ananassa HOM05D004322 ORTHO05D005033 3.4e-68 262.7 236 56.4
Lj9A313T47 Lonicera japonica HOM05D004322 ORTHO05D005033 4.4e-68 262.3 208 61.1
Aa31LG9G3260 Aethionema arabicum HOM05D004322 ORTHO05D005033 7.5e-68 261.5 236 54.2
A08p10330 Brassica napus HOM05D004322 ORTHO05D005033 1.3e-67 260.8 236 53.4
FAN13G1883 Fragaria x ananassa HOM05D004322 ORTHO05D005033 2.8e-67 259.6 236 54.7
BolC3t14638H Brassica oleracea HOM05D004322 ORTHO05D005033 3.7e-67 259.2 236 54.2
CsaV3_6G037290 Cucumis sativus L. HOM05D004322 ORTHO05D005033 4.9e-67 258.8 236 53.4
CARHR220130 Cardamine hirsuta HOM05D004322 ORTHO05D005033 8.3e-67 258.1 236 52.5
MELO3C014386.2 Cucumis melo HOM05D004322 ORTHO05D005033 4.1e-66 255.8 236 54.2
Cfa015337 Carpinus fangiana HOM05D004322 ORTHO05D005033 5.4e-66 255.4 214 58.9
THA.LOC104804784 Tarenaya hassleriana HOM05D004322 ORTHO05D005033 5.4e-66 255.4 236 52.1
HPP92_016157 Vanilla planifolia HOM05D004322 ORTHO05D005033 4.5e-65 252.3 237 52.3
CSS0031640 Camellia sinensis var. sinensis HOM05D004322 ORTHO05D005033 3.6e-62 242.7 220 52.3
CDE05G0654 Ceratophyllum demersum HOM05D004322 ORTHO05D005033 1.0e-61 241.1 236 49.6
Sc10g0004980 Simmondsia chinensis HOM05D004322 ORTHO05D005033 5.8e-60 235.3 211 53.6
Lsat_1_v5_gn_9_116181 Lactuca sativa HOM05D004322 ORTHO05D005033 1.3e-59 234.2 229 51.1
Medtr0153s0030 Medicago truncatula HOM05D004322 ORTHO05D005033 1.3e-59 234.2 208 53.8
BcaC01g05770 Brassica carinata HOM05D004322 ORTHO05D005033 2.9e-59 233.0 218 52.3
Actinidia00226 Actinidia chinensis HOM05D004322 ORTHO05D005033 9.2e-58 228.0 236 51.3
Dinv19343 Davidia involucrata HOM05D004322 ORTHO05D005033 7.8e-57 224.9 218 51.4
Os04g0428900 Oryza sativa ssp. japonica HOM05D004322 ORTHO05D005033 7.8e-57 224.9 236 48.3
Nitab4.5_0003071g0090 Nicotiana tabacum HOM05D004322 ORTHO05D005033 1.5e-55 220.7 238 48.7
Zm00001eb082980 Zea mays HOM05D004322 ORTHO05D005033 4.7e-54 215.7 236 45.8
Sabra01G0160700 Salix brachista HOM05D004322 ORTHO05D005033 1.8e-53 213.8 205 53.7
Prupe.1G186200 Prunus persica HOM05D004322 ORTHO05D005033 1.2e-52 211.1 198 53.5
AagrBONN_evm.TU.Sc2ySwM_228.2369 Anthoceros agrestis HOM05D004322 ORTHO05D005033 4.1e-50 202.6 236 40.7
SMO353G0429 Selaginella moellendorffii HOM05D004322 ORTHO05D005033 4.6e-49 199.1 236 41.9
Rhsim11G0132600 Rhododendron simsii HOM05D004322 ORTHO05D005033 5.6e-47 192.2 172 55.8
Mapoly0036s0096 Marchantia polymorpha HOM05D004322 ORTHO05D005033 9.5e-47 191.4 233 40.8
BolC9t60208H Brassica oleracea HOM05D004322 ORTHO05D005033 3.1e-45 186.4 182 50.0
Cc02_g22150 Coffea canephora HOM05D004322 ORTHO05D005033 1.5e-44 184.1 132 61.4
Lalb_Chr15g0090601 Lupinus albus HOM05D004322 ORTHO05D005033 1.1e-42 177.9 116 62.9
Psat1g219720 Pisum sativum HOM05D004322 ORTHO05D005033 4.1e-42 176.0 121 60.3
QL04p052291 Quercus lobata HOM05D004322 ORTHO05D005033 1.6e-41 174.1 569 27.1
Haze_01278 Corylus avellana HOM05D004322 ORTHO05D005033 7.8e-41 171.8 123 62.6
Thecc.07G026500 Theobroma cacao HOM05D004322 ORTHO05D005033 1.7e-40 170.6 223 44.4
Pp3c14_8990 Physcomitrium patens HOM05D004322 ORTHO05D005033 5.1e-40 169.1 233 34.8
THA.LOC104809099 Tarenaya hassleriana HOM05D004322 ORTHO05D005033 1.1e-37 161.4 171 45.0
CBR_g26281 Chara braunii HOM05D004322 ORTHO05D005033 8.9e-37 158.3 198 39.4
CDE05G2724 Ceratophyllum demersum HOM05D004322 ORTHO05D005033 1.5e-36 157.5 168 48.2
SHI16603 Sapria himalayana HOM05D004322 ORTHO05D005033 2.6e-36 156.8 143 51.0
SEGI_09552 Sequoiadendron giganteum HOM05D004322 ORTHO05D005033 9.3e-34 148.3 116 51.7
SEGI_31940 Sequoiadendron giganteum HOM05D004322 ORTHO05D005033 1.6e-33 147.5 116 51.7
Medtr0153s0020 Medicago truncatula HOM05D004322 ORTHO05D005033 1.7e-32 144.1 93 61.3
Cc02_g22140 Coffea canephora HOM05D004322 ORTHO05D005033 1.3e-30 137.9 83 81.9
Cpa.g.sc157.24 Carica papaya HOM05D004322 ORTHO05D005033 1.6e-30 137.5 149 50.3
CBR_g4180 Chara braunii HOM05D004322 ORTHO05D005033 5.3e-29 132.5 181 38.7
CAN.G1352.11 Capsicum annuum HOM05D004322 ORTHO05D005033 5.8e-28 129.0 116 53.4
Zm00001eb422450 Zea mays HOM05D004322 ORTHO05D005033 2.9e-27 126.7 141 42.6
Lalb_Chr15g0090591 Lupinus albus HOM05D004322 ORTHO05D005033 3.8e-27 126.3 77 80.5
Oeu044826.1 Olea europaea HOM05D004322 ORTHO05D005033 3.5e-25 119.8 77 76.6
Oeu044828.1 Olea europaea HOM05D004322 ORTHO05D005033 3.5e-25 119.8 77 76.6
Manes.10G133677 Manihot esculenta HOM05D004322 ORTHO05D005033 7.8e-25 118.6 77 76.6
CAN.G1352.10 Capsicum annuum HOM05D004322 ORTHO05D005033 1.3e-24 117.9 77 75.3
Sabra01G0160600 Salix brachista HOM05D004322 ORTHO05D005033 3.9e-24 116.3 77 75.3
Gohir.D08G183600 Gossypium hirsutum HOM05D004322 ORTHO05D005033 5.1e-24 115.9 77 71.4
QL11p019123 Quercus lobata HOM05D004322 ORTHO05D005033 1.9e-23 114.0 75 73.3
Potri.003G022001 Populus trichocarpa HOM05D004322 ORTHO05D005033 2.8e-22 110.2 77 68.8
Gohir.D12G215800 Gossypium hirsutum HOM05D004322 ORTHO05D005033 3.6e-22 109.8 75 70.7
Glyma.10G118567 Glycine max HOM05D004322 ORTHO05D005033 1.2e-20 104.8 69 73.9
Oeu012736.1 Olea europaea HOM05D004322 ORTHO05D005033 2.0e-20 104.0 72 72.2
SEGI_18567 Sequoiadendron giganteum HOM05D004322 ORTHO05D005033 3.8e-19 99.8 81 61.7
Thecc.07G026400 Theobroma cacao HOM05D004322 ORTHO05D005033 3.2e-18 96.7 56 71.4
MBI18_g28448_MAGBIO Magnolia biondii HOM05D004322 ORTHO05D005033 9.3e-18 95.1 61 65.6
Cpa.g.sc157.23 Carica papaya HOM05D004322 ORTHO05D005033 2.7e-17 93.6 55 70.9
Glyma.10G118633 Glycine max HOM05D004322 ORTHO05D005033 2.7e-17 93.6 100 43.0
Medtr0153s0060 Medicago truncatula HOM05D004322 ORTHO05D005033 3.9e-16 89.7 143 39.9
Lsat_1_v5_gn_9_65501 Lactuca sativa HOM05D001588 ORTHO05D002975 4.8e-14 82.8 55 58.2
QL11p019127 Quercus lobata HOM05D004322 ORTHO05D005033 6.2e-14 82.4 64 62.5
Medtr2g007855 Medicago truncatula HOM05D004322 ORTHO05D005033 1.8e-13 80.9 63 58.7
Lsat_1_v5_gn_7_68880 Lactuca sativa HOM05D004322 ORTHO05D005033 1.2e-12 78.2 55 54.5
TPR.G19730 Trifolium pratense HOM05D004322 ORTHO05D005033 8.4e-11 72.0 49 59.2
Cre14.g608850 Chlamydomonas reinhardtii HOM05D004322 ORTHO05D005033 1.2e-09 68.2 157 29.9
TPR.G19742 Trifolium pratense HOM05D004322 ORTHO05D005033 1.2e-09 68.2 45 73.3
PRCOL_00004865 Prasinoderma coloniale HOM05D004322 ORTHO05D005033 7.9e-09 65.5 229 20.5
SEGI_23686 Sequoiadendron giganteum HOM05D004322 ORTHO05D005033 1.8e-08 64.3 51 58.8
BcaB04g18035 Brassica carinata HOM05D004322 ORTHO05D005033 3.9e-08 63.2 56 44.6
BcaB07g33266 Brassica carinata HOM05D004322 ORTHO05D005033 2.5e-07 60.5 56 42.9
TAR381G0540 Trochodendron aralioides HOM05D004322 ORTHO05D005033 4.3e-07 59.7 46 65.2
HPP92_016147 Vanilla planifolia HOM05D004322 ORTHO05D005033 1.6e-06 57.8 77 39.0
Lsat_1_v5_gn_4_104380 Lactuca sativa HOM05D001722 ORTHO05D048310 4.8e-06 56.2 33 57.6


User provided reference genes

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